Gene_Locus Report

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Gene_locus Report for: psepf-q3kh20

Pseudomonas fluorescens; Pseudomonas sp. virulence protein precursor

Comment
Other strains: Pseudomonas fluorescens (strain PfO-1); Pseudomonas sp.


Relationship
Family|VirJ
Block| X
Position in NCBI Life Tree|Pseudomonas fluorescens
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Pseudomonadales: N E > Pseudomonadaceae: N E > Pseudomonas: N E > Pseudomonas fluorescens group: N E > Pseudomonas fluorescens: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Graphical view for this peptide sequence: psepf-q3kh20
Colored MSA for VirJ (raw)
MIQRSLKYILVALLVLAAIAGGGFWYLKRPAPEPTLEQLTPADGAAMTRV
IPGTKPKAQVLVAVNDDQKLSDKQLSTLSRSASAQIVQVILPKDCLLQSR
ALQAGLRELNGPATLVSGIGPGAVLAWRWLSEQKDDKAQAVSVDLALEKP
GCTHLLPKAAAHGHWLVAWNDNPDDTSAGFVRDQPNAETSISDYDINLPQ
VLNNELRKILVGGDKANGGLQIPVVEVPAGQAKDTVTLFLSGDGGWRDLD
RDVAGEMAKIGYPVVGIDTLRYYWQHKSPEQSALDLTELMQHYRQKWGTK
RFILTGYSFGADVLPAIYNRLPETEQQRVDAIILLAFARTGSFEIEVEGW
LGNAGKEAATGPEMAKLPPAKVVCIYGEEETDESGCTDKTAVGEAVKLPG
GHHFDENYPALAKRLVDLIEKRQNSAQVAEE
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MIQRSLKYILVALLVLAAIAGGGFWYLKRPAPEPTLEQLTPADGAAMTRV
IPGTKPKAQVLVAVNDDQKLSDKQLSTLSRSASAQIVQVILPKDCLLQSR
ALQAGLRELNGPATLVSGIGPGAVLAWRWLSEQKDDKAQAVSVDLALEKP
GCTHLLPKAAAHGHWLVAWNDNPDDTSAGFVRDQPNAETSISDYDINLPQ
VLNNELRKILVGGDKANGGLQIPVVEVPAGQAKDTVTLFLSGDGGWRDLD
RDVAGEMAKIGYPVVGIDTLRYYWQHKSPEQSALDLTELMQHYRQKWGTK
RFILTGYSFGADVLPAIYNRLPETEQQRVDAIILLAFARTGSFEIEVEGW
LGNAGKEAATGPEMAKLPPAKVVCIYGEEETDESGCTDKTAVGEAVKLPG
GHHFDENYPALAKRLVDLIEKRQNSAQVAEE



No Reference

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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