Gene_Locus Report

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Gene_locus Report for: psepu-PHAZ

Pseudomonas putida, Pseudomonas sp., Pseudomonas entomophila, pha depolymerase poly(3-hydroxyalkanoate)depolymerase (phaZ)

Comment
Other strains: Pseudomonas putida (Arthrobacter siderocapsulatus) (strain BIRD-1; KT2440; GB-1; F1 / ATCC 700007; W619), Pseudomonas sp. (strains LDC-25; TJI-51; gl01), Pseudomonas entomophila (strain L48) Intracellular nPHAMCL


Relationship
Family|PHA_depolymerase_arom
Block| X
Position in NCBI Life Tree|Pseudomonas putida
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Pseudomonadales: N E > Pseudomonadaceae: N E > Pseudomonas: N E > Pseudomonas putida group: N E > Pseudomonas putida: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Graphical view for this peptide sequence: psepu-PHAZ
Colored MSA for PHA_depolymerase_arom (raw)
MPEPYIFRTVELDDQSIRTAVRPGKPHLTPLPIFNGIGANLELVFPFIEA
LDPDLEGIAFDVPGVGGSSTPRHPYRFPGLAKLTARMLDYLDYGQVSAIG
VSWGGALAQQFAHDYPERCKKLVLAATAAGAVMVPGKPKVLWMMASPRRY
VQPSHVIRIAPMIYGGAFRRDPDLAMHHASKVRSGGKMGYYWQLFAGLGW
TSIHWLHKIHQPTLVLAGDDDPLIPLINMRLLAWRIPNAQLHTIDDGHLF
LITRAEAVAPIIMKFLQEERQRAVMHPRPASGG
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MPEPYIFRTVELDDQSIRTAVRPGKPHLTPLPIFNGIGANLELVFPFIEA
LDPDLEGIAFDVPGVGGSSTPRHPYRFPGLAKLTARMLDYLDYGQVSAIG
VSWGGALAQQFAHDYPERCKKLVLAATAAGAVMVPGKPKVLWMMASPRRY
VQPSHVIRIAPMIYGGAFRRDPDLAMHHASKVRSGGKMGYYWQLFAGLGW
TSIHWLHKIHQPTLVLAGDDDPLIPLINMRLLAWRIPNAQLHTIDDGHLF
LITRAEAVAPIIMKFLQEERQRAVMHPRPASGG


References
3 more
    Title: Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1
    Matilla MA, Pizarro-Tobias P, Roca A, Fernandez M, Duque E, Molina L, Wu X, van der Lelie D, Gomez MJ and Ramos JL <1 more author(s)>
    Ref: Journal of Bacteriology, 193:1290, 2011 : PubMed

            

    Title: Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
    Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VA, Fouts DE, Gill SR, Pop M and Fraser CM <33 more author(s)>
    Ref: Environ Microbiol, 4:799, 2002 : PubMed

            

    Title: Novel Biodegradable Aromatic Plastics from a Bacterial Source. Genetic and biochemical studies on a route of the phenylacetyl-coa catabolon
    Garcia B, Olivera ER, Minambres B, Fernandez-Valverde M, Canedo LM, Prieto MA, Garcia JL, Martinez M, Luengo JM
    Ref: Journal of Biological Chemistry, 274:29228, 1999 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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