Gene_locus Report for: psesm-q87v84

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Pseudomonadales: N E > Pseudomonadaceae: N E > Pseudomonas: N E > Pseudomonas syringae group: N E > Pseudomonas syringae group genomosp. 3: N E > Pseudomonas syringae pv. tomato: N E

Title: The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, DeBoy RT, Durkin AS and Collmer A <34 more author(s)> Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, DeBoy RT, Durkin AS, Kolonay JF, Madupu R, Daugherty S, Brinkac L, Beanan MJ, Haft DH, Nelson WC, Davidsen T, Zafar N, Zhou L, Liu J, Yuan Q, Khouri H, Fedorova N, Tran B, Russell D, Berry K, Utterback T, Van Aken SE, Feldblyum TV, D'Ascenzo M, Deng WL, Ramos AR, Alfano JR, Cartinhour S, Chatterjee AK, Delaney TP, Lazarowitz SG, Martin GB, Schneider DJ, Tang X, Bender CL, White O, Fraser CM, Collmer A (- 34)
Ref: Proc Natl Acad Sci U S A, 100:10181, 2003 : PubMed
Abstract


ESTHER: Buell_2003_Proc.Natl.Acad.Sci.U.S.A_100_10181
PubMedSearch: Buell 2003 Proc.Natl.Acad.Sci.U.S.A 100 10181
PubMedID: 12928499
Gene_locus related to this paper: pse14-q48ia0, psesm-IRP1, psesm-METX, psesm-q87y20, psesm-q88a39, psesm-q881b4, psesm-q889k3, psesy-BIOH, psesy-CFA7, psesy-CFA9, psesy-CMAT, psesy-ESTA, psesy-IRP4, psesy-PHAB, psesy-PHAC, psesy-PHAG1, psesy-PHAG2, psesy-PIP, psesy-PSPTO0162, psesy-PSPTO0421, psesy-PSPTO0508, psesy-PSPTO0675, psesy-PSPTO0715, psesy-PSPTO1154, psesy-PSPTO1504, psesy-PSPTO1559, psesy-PSPTO1580, psesy-PSPTO1604, psesy-PSPTO1677, psesy-PSPTO1766, psesy-PSPTO1863, psesy-PSPTO2042, psesy-PSPTO2134, psesy-PSPTO2150, psesy-PSPTO2209, psesy-PSPTO2217, psesy-PSPTO2218, psesy-PSPTO2293, psesy-PSPTO2495, psesy-PSPTO2674, psesy-PSPTO2830, psesy-PSPTO3135, psesy-PSPTO3138, psesy-PSPTO3264, psesy-PSPTO3282, psesy-PSPTO3306, psesy-PSPTO3485, psesy-PSPTO3572, psesy-PSPTO3911, psesy-PSPTO4089, psesy-PSPTO4178, psesy-PSPTO4277, psesy-PSPTO4430, psesy-PSPTO4519, psesy-PSPTO4540, psesy-PSPTO4699, psesy-PSPTO4708, psesy-PSPTO4781, psesy-PSPTO4843, psesy-PSPTO4964, psesy-PSPTO5218, psesy-PSPTO5299, psesy-PSPTO5448, psesy-PSPTO5537, psesy-SYLD, psesy-SYPC, psesy-SYRE, psesm-q87v84

Abstract

We report the complete genome sequence of the model bacterial pathogen Pseudomonas syringae pathovar tomato DC3000 (DC3000), which is pathogenic on tomato and Arabidopsis thaliana. The DC3000 genome (6.5 megabases) contains a circular chromosome and two plasmids, which collectively encode 5,763 ORFs. We identified 298 established and putative virulence genes, including several clusters of genes encoding 31 confirmed and 19 predicted type III secretion system effector proteins. Many of the virulence genes were members of paralogous families and also were proximal to mobile elements, which collectively comprise 7% of the DC3000 genome. The bacterium possesses a large repertoire of transporters for the acquisition of nutrients, particularly sugars, as well as genes implicated in attachment to plant surfaces. Over 12% of the genes are dedicated to regulation, which may reflect the need for rapid adaptation to the diverse environments encountered during epiphytic growth and pathogenesis. Comparative analyses confirmed a high degree of similarity with two sequenced pseudomonads, Pseudomonas putida and Pseudomonas aeruginosa, yet revealed 1,159 genes unique to DC3000, of which 811 lack a known function.