Gene_Locus Report

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Gene_locus Report for: psesm-q881b4

Pseudomonas syringae pv. tomato hypothetical protein

Comment
Other strains: Pseudomonas syringae pv. tomato (strains DC3000; T1)


Relationship
Family|Tannase
Block| X
Position in NCBI Life Tree|Pseudomonas syringae pv. tomato
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Pseudomonadales: N E > Pseudomonadaceae: N E > Pseudomonas: N E > Pseudomonas syringae group: N E > Pseudomonas syringae group genomosp. 3: N E > Pseudomonas syringae pv. tomato: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : AE016853
1 UniProt : Q881B4
1 UniProt : Q881B4
1 Interpro : Q881B4
1 Pfam : Q881B4
1 PIRSF : Q881B4
1 SUPERFAM : Q881B4
Sequence
Graphical view for this peptide sequence: psesm-q881b4
Colored MSA for Tannase (raw)
MKPTLPRYARVLTLLAGSVFFQMPVQAKALAADSTDALARLAVVKPVMGC
AALASVNLNDIGGQGSRVLSASEATREGIAVCMVEGRLAPQIGFRLELPT
GTWAQRYLQVGCGGLCGNINTTVRVAEGCKPLNTGAFAVASTDMGHQASD
VTFGDDPQKRADFAHRSVHLTAVASKKLIAAFYGKHAEYAYFSGCSDGGR
EALVAAQRYPDDFNGIIAGAPALNFQVQKTLYHGWMARSNIGPDGKPILL
ASRLPLLHKAVLAKCDVLDGQIDGLIADPRLCNFDPASVQCTSSVDTTNC
LTQQEVAVVKRFYEGPKDPDSGERLTVGGPQPGSELGWAGVFVPITAEQT
VYSEKAASEAIRNMVFENNPVAGFDLSTLRFDKSTFDKLRPLHPLYDATN
PDLAPFASRGGKLILWHGWADPNVSPLNTLAYHEAVEAKLGKARTEAFES
LYMLPGVYHCGAGEGPSVIDLLTPMMAWVESNHAPDAIVARQARPGKTTK
GRPRTQQSLPDFLVTDNVANRGRTRKVFPYPYMAEYDHKGYSKSASSYQR
AEPLTTEKTPQWMGSGFFQPYAARER
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MKPTLPRYARVLTLLAGSVFFQMPVQAKALAADSTDALARLAVVKPVMGC
AALASVNLNDIGGQGSRVLSASEATREGIAVCMVEGRLAPQIGFRLELPT
GTWAQRYLQVGCGGLCGNINTTVRVAEGCKPLNTGAFAVASTDMGHQASD
VTFGDDPQKRADFAHRSVHLTAVASKKLIAAFYGKHAEYAYFSGCSDGGR
EALVAAQRYPDDFNGIIAGAPALNFQVQKTLYHGWMARSNIGPDGKPILL
ASRLPLLHKAVLAKCDVLDGQIDGLIADPRLCNFDPASVQCTSSVDTTNC
LTQQEVAVVKRFYEGPKDPDSGERLTVGGPQPGSELGWAGVFVPITAEQT
VYSEKAASEAIRNMVFENNPVAGFDLSTLRFDKSTFDKLRPLHPLYDATN
PDLAPFASRGGKLILWHGWADPNVSPLNTLAYHEAVEAKLGKARTEAFES
LYMLPGVYHCGAGEGPSVIDLLTPMMAWVESNHAPDAIVARQARPGKTTK
GRPRTQQSLPDFLVTDNVANRGRTRKVFPYPYMAEYDHKGYSKSASSYQR
AEPLTTEKTPQWMGSGFFQPYAARER


References
    Title: A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000
    Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H, Viana CJ, Warren A and Vinatzer BA <8 more author(s)>
    Ref: Mol Plant Microbe Interact, 22:52, 2009 : PubMed

            

    Title: The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
    Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, DeBoy RT, Durkin AS and Collmer A <34 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 100:10181, 2003 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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