Gene_Locus Report

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Gene_locus Report for: pseub-e2mf08

Pseudomonas syringae pv. tomato T1 Secretory lipase

Comment
Other strains: Pseudomonas syringae pv. tomato T1; Pseudomonas amygdali pv. lachrymans str. M302278; Pseudomonas syringae group; Pseudomonas syringae pv. maculicola


Relationship
Family|Fungal-Bact_LIP
Block| X
Position in NCBI Life Tree|Pseudomonas syringae pv. tomato T1
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Pseudomonadales: N E > Pseudomonadaceae: N E > Pseudomonas: N E > Pseudomonas syringae group: N E > Pseudomonas syringae group genomosp. 3: N E > Pseudomonas syringae pv. tomato: N E > Pseudomonas syringae pv. tomato T1: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Graphical view for this peptide sequence: pseub-e2mf08
Colored MSA for Fungal-Bact_LIP (raw)
MHSLVRSSAVLLLALLTGCSGTPQATSEAVPGDGGVPGFYTWAGDLPSRP
GQLLRSEPLTPQQGLKNAALNIRILYTSTEGRSNGPIGVSGALFIPEGTP
PKGGWPLMAWAHGTVGSADVCAPSFAGRSGRDTRYLNEWLGRGYAIVATD
YEGLGTPGLHPFGLSSPLAYGVLDSIRAVQRADFNLSSRVVVFGQSQGGR
AAFATAVYKKTYAPELNIVGVVATGTPYPMASGHAGIFGQDTSRDQVTPS
LAYNLLRLSTAGLINPSFVATDHLSDRAKPAFEVSQRGCLHAIERKFVAD
GLTFNNSFRRSPEAVLDQVNRESSYPTLTSDIPIFIGTGGKDVVSPVRSQ
IALVKDACAAGDRVEWHYYPQLDHSGAVNGSLPDSTRFVEKAFSGEFMAG
NCGAIGAIRPR
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MHSLVRSSAVLLLALLTGCSGTPQATSEAVPGDGGVPGFYTWAGDLPSRP
GQLLRSEPLTPQQGLKNAALNIRILYTSTEGRSNGPIGVSGALFIPEGTP
PKGGWPLMAWAHGTVGSADVCAPSFAGRSGRDTRYLNEWLGRGYAIVATD
YEGLGTPGLHPFGLSSPLAYGVLDSIRAVQRADFNLSSRVVVFGQSQGGR
AAFATAVYKKTYAPELNIVGVVATGTPYPMASGHAGIFGQDTSRDQVTPS
LAYNLLRLSTAGLINPSFVATDHLSDRAKPAFEVSQRGCLHAIERKFVAD
GLTFNNSFRRSPEAVLDQVNRESSYPTLTSDIPIFIGTGGKDVVSPVRSQ
IALVKDACAAGDRVEWHYYPQLDHSGAVNGSLPDSTRFVEKAFSGEFMAG
NCGAIGAIRPR


Reference
    Title: A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000
    Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H, Viana CJ, Warren A and Vinatzer BA <8 more author(s)>
    Ref: Mol Plant Microbe Interact, 22:52, 2009 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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