Gene_locus Report for: rhiec-q2k4j5 Rhizobium etli, acid tolerance and virulence protein
Comment
Other strains: Rhizobium etli (CFN 42 / ATCC 51251; bv. mimosae str. Mim1) Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Alphaproteobacteria: N E > Rhizobiales: N E > Rhizobiaceae: N E > Rhizobium/Agrobacterium group: N E > Rhizobium: N E > Rhizobium etli: N E 6_AlphaBeta_hydrolase :
rhie6-b3pzs3 Rhizobium etli (strain CIAT 652) Probable esterase/hydrolase protein ,
rhie6-b3q3m7 Rhizobium etli (strain CIAT 652) Putative hydrolase protein ,
rhie6-b3q440 Rhizobium etli (strain CIAT 652) Hypothetical conserved protein ,
rhiec-q2jyh1 Rhizobium etli (strain CFN 42 / ATCC 51251) Putative hydrolase protein ,
rhiec-q2jza1 Rhizobium etli (strain CFN 42 / ATCC 51251) decarboxylase protein ,
rhiec-q2k0g7 Rhizobium etli (strain CFN 42 / ATCC 51251) putative alpha/beta hydrolase protein ,
rhiec-q2k4e5 Rhizobium etli (strain CFN 42 / ATCC 51251) probable lactone-specific esterase protein ,
rhiec-q2k6p0 Rhizobium etli (strains CFN 42 / ATCC 51251; CIAT 652) putative hydrolase protein ,
rhiec-q2k7j2 Rhizobium etli (strains CFN 42 / ATCC 51251; CIAT 652) Putative hydrolase protein ,
rhiec-q2k7l8 Rhizobium etli (strain CFN 42 / ATCC 51251) Putative hydrolase protein ,
rhiec-q2k8z8 Rhizobium etli (strain CFN 42 / ATCC 51251) probable hydrolase protein ,
rhiec-q2k046 Rhizobium etli (strain CFN 42 / ATCC 51251) putative hydrolase protein ,
rhiec-q2k168 Rhizobium etli (strain CFN 42 / ATCC 51251) probable hydrolase protein ,
rhiec-q2kaf4 Rhizobium etli (strain CFN 42 / ATCC 51251) putative hydrolase protein ,
rhiec-q2kb19 Rhizobium etli (strain CFN 42 / ATCC 51251) putative peroxidase protein ,
rhiec-q2kb93 Rhizobium etli (strain CFN 42 / ATCC 51251) putative esterase protein ,
rhiec-q2kdk4 Rhizobium etli (strain CFN 42 / ATCC 51251) putative hydrolase protein ,
rhiec-q2kdz8 Rhizobium etli (strain CFN 42 / ATCC 51251) putative hydrolase protein ,
rhiet-YP051 Rhizobium etli hypothetical protein ,
rhiet-YP059 Rhizobium etli putative hydrolase/esterase .
A85-EsteraseD-FGH :
rhiec-q2jyp5 Rhizobium etli (strain CFN 42 / ATCC 51251; CIAT 652) probable s-formylglutathione hydrolase protein .
A85-IroE-IroD-Fes-Yiel :
rhie6-b3prn4 Rhizobium etli (strain CIAT 652) Hypothetical conserved protein .
Aclacinomycin-methylesterase_RdmC :
rhiec-q2k238 Rhizobium etli (strain CFN 42 / ATCC 51251; CIAT 652) putative hydrolase protein .
Atu1826-like :
rhiec-q2k801 Rhizobium etli; Rhizobium gallicum; Rhizobium sp.; Rhizobium phaseoli putative alpha/beta hydrolase protein .
Carboxymethylbutenolide_lactonase :
rhiec-q2k052 Rhizobium etli beta-ketoadipate enol-lactone hydrolase protein (EC 3.1.1.24) .
Carboxypeptidase_S10 :
rhiec-q2kdc6 Rhizobium etli (strain CFN 42 / ATCC 51251) putative carboxypeptidase-related protein .
Cocaine_esterase :
rhiec-q2k1i0 Rhizobium etli (strain CFN 42 / ATCC 51251) hypothetical conserved protein .
Dienelactone_hydrolase :
rhiec-q2k107 Rhizobium etli, Rhizobium leguminosarum, probable dienelactone hydrolase protein (EC 3.1.1.45) ,
rhiec-q2kb89 Rhizobium etli (strain CFN 42 / ATCC 51251) putative hydrolase protein .
Duf_900 :
rhie6-b3pwr5 Rhizobium etli (strain CIAT 652) Hypothetical conserved protein ,
rhie6-b3q5s7 Rhizobium etli (strain CIAT 652) Hypothetical conserved protein ,
rhiec-q2jz13 Rhizobium etli (strain CFN 42 / ATCC 51251) hypothetical conserved protein ,
rhiec-q2kd15 Rhizobium etli (strains CFN 42 / ATCC 51251; CNPAF512) Rhizobium etli (strain CIAT 652) hypothetical conserved protein .
Duf_3141 :
rhiet-YP061 Rhizobium etli (and strain CFN 42 / ATCC 51251) hypothetical protein .
Epoxide_hydrolase :
rhiec-q2jya1 Rhizobium etli (strain CFN 42 / ATCC 51251) putative epoxide hydrolase protein ,
rhiec-q2jyb1 Rhizobium etli (strain CFN 42 / ATCC 51251) probable epoxide hydrolase protein ,
rhiec-q2k7j4 Rhizobium etli (strains CFN 42 / ATCC 51251; CIAT 652) probable epoxide hydrolase protein .
Haloacetate_dehalogenase :
rhie6-b3q5q8 Rhizobium etli (strain CIAT 652) Putative hydrolase protein ,
rhie6-b3q494 Rhizobium etli (strain CIAT 652) Putative epoxide hydrolase protein ,
rhiec-q2jz28 Rhizobium etli (strain CFN 42 / ATCC 51251) putative hydrolase protein .
Haloperoxidase :
rhie6-b3q4m5 Rhizobium etli (strain CIAT 652) Putative non-heme haloperoxidase protein ,
rhiec-q2k741 Rhizobium etli (strains CFN 42 / ATCC 51251; CIAT 652) Rhizobium leguminosarum bv. trifolii (strains WSM1325; WSM2304) probable chloride peroxidase protein (EC 1.11.1.10) .
Hormone-sensitive_lipase_like :
rhiec-q2jzn2 Rhizobium etli (strain CFN 42 / ATCC 51251) hypothetical conserved protein ,
rhiec-q2k1i2 Rhizobium etli (strain CFN 42 / ATCC 51251) probable lipase/esterase protein ,
rhiec-q2k4x3 Rhizobium etli (strain CFN 42 / ATCC 51251) putative esterase protein ,
rhiec-q2k5l4 Rhizobium etli, putative lipase protein ,
rhiec-q2k9h7 Rhizobium etli (strain CFN 42 / ATCC 51251) putative esterase/lipase/thioesterase family protein .
Hydrolase_RBBP9_YdeN :
rhiec-q2k7y0 Rhizobium etli, Rhizobium leguminosarum, hypothetical conserved protein ,
rhiec-q2k160 Rhizobium etli (strain CFN 42 / ATCC 51251) hypothetical conserved protein .
LYsophospholipase_carboxylesterase :
rhiec-q2k582 Rhizobium etli (strain CFN 42 / ATCC 51251) probable esterase/lipase/thioesterase protein ,
rhiec-q2kcj7 Rhizobium etli (strain CFN 42 / ATCC 51251) hypothetical conserved protein .
Monoglyceridelipase_lysophospholip :
rhie6-b3pty9 Rhizobium etli (strains CIAT 652; CNPAF512) Putative lysophospholipase protein ,
rhiec-q2k4a8 Rhizobium etli (strain CFN 42 / ATCC 51251) lysophospholipase l2 protein (EC 3.1.1.5) ,
rhiec-q2k5i6 Rhizobium etli (strain CFN 42 / ATCC 51251) putative hydrolase protein ,
rhiec-q2k693 Rhizobium etli (strain CFN 42 / ATCC 51251) putative lysophospholipase protein .
NLS3-Tex30 :
rhiet-f2a8z5 Rhizobium etli CNPAF512 Putative hydrolase protein ,
rhiec-q2k056 Rhizobium etli (strain CFN 42 / ATCC 51251) Putative hydrolase protein .
PHA_synth_I :
rhiet-phbc Rhizobium etli (and strain CFN 42 / ATCC 51251) ) poly-beta-hydroxybutyrate polymerase protein (polyhydroxyalkanoic acid synthase) .
PHB_depolymerase_PhaZ :
rhiec-q2ke86 Rhizobium etli, Rhizobium leguminosarum, probable intracellular phb depolymerase protein .
Proline_iminopeptidase :
rhiec-q2k213 Rhizobium etli (strain CFN 42 / ATCC 51251) proline iminopeptidase protein ,
rhiec-q2k218 Rhizobium etli (strain CFN 42 / ATCC 51251; CIAT 652) proline iminopeptidase protein (EC 3.4.11.5) ,
rhiec-q2k847 Rhizobium etli (strain CFN 42 / ATCC 51251) proline iminopeptidase (pip) (prolyl aminopeptidase) (pap) ,
rhiec-q2kab3 Rhizobium etli (strain CFN 42 / ATCC 51251) proline iminopeptidase protein (EC 3.4.11.5) ,
rhie6-b3pnw6 Rhizobium etli (strain CIAT 652). Proline iminopeptidase .
S9N_PPCE_Peptidase_S9 :
rhiec-q2ka74 Rhizobium etli (strain CFN 42 / ATCC 51251) putative peptidase protein .
S9N_PREPL_Peptidase_S9 :
rhiec-q2kav5 Rhizobium etli, Rhizobium leguminosarum bv. viciae, bv. trifolii, protease II protein (EC 3.4.21.83) .
Thioesterase :
rhiec-q2jyi9 Rhizobium etli, Rhizobium leguminosarum, vicibactin biosynthesis non-ribosomal peptide synthase protein Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can
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(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Rhizobium etli CFN 42:
N ,
E .
Rhizobium etli bv. mimosae str. Mim1:
N ,
E .
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: rhiec-q2k4j5 Colored MSA for VirJ (raw)
MIKTILLATACVCMLAAAPADAAEETTQSFESGLIPSPHIFLPEGEVKGT
VMLISNAAGWGDYEKAEADRLVAEGAVVIGVDFPSYVQALSGYDVSLNDG
CIYMVSDIESLSQQVQRATGNNAYHLPIVAGIGEGGALALAIAAQTPDAT
IGQTLAVDPLAGIPLTKELCTPASKKVIGERTVYGLSDGALPDPIITVFT
PKADKDGRAHAEALQKAHSEIEIRDSTDDAQTVFGDTLDDLVTASGAFGN
PLGLPLAVLEATPAFDTMAVIYSGDGGWRDIDKEVGGTLQKEGIPVVGVD
SLHYFWSERKPEETASDLSKIIDFYRKQWKVKHVLLVGYSFGADVVPATY
QLLKPAEKSSVVQLSLLSLSHQVDYVISVLGWLGQKTEGAGGDPVADLKN
VDPKLVQCVYGKEDDDDVACPALKDSGAEVVELPGDHHFDENYDLLTKTI
IDALKRRLQD
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M I K T I L L A T A C V C M L A A A P A D A A E E T T Q S F E S G L I P S P H I F L P E G E V K G T V M L I S N A A G W G D Y E K A E A D R L V A E G A V V I G V D F P S Y V Q A L S G Y D V S L N D G C I Y M V S D I E S L S Q Q V Q R A T G N N A Y H L P I V A G I G E G G A L A L A I A A Q T P D A T I G Q T L A V D P L A G I P L T K E L C T P A S K K V I G E R T V Y G L S D G A L P D P I I T V F T P K A D K D G R A H A E A L Q K A H S E I E I R D S T D D A Q T V F G D T L D D L V T A S G A F G N P L G L P L A V L E A T P A F D T M A V I Y S G D G G W R D I D K E V G G T L Q K E G I P V V G V D S L H Y F W S E R K P E E T A S D L S K I I D F Y R K Q W K V K H V L L V G Y S F G A D V V P A T Y Q L L K P A E K S S V V Q L S L L S L S H Q V D Y V I S V L G W L G Q K T E G A G G D P V A D L K N V D P K L V Q C V Y G K E D D D D V A C P A L K D S G A E V V E L P G D H H F D E N Y D L L T K T I I D A L K R R L Q D
Reference
Title: The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting repliconsGonzalez V , Santamaria RI , Bustos P , Hernandez-Gonzalez I , Medrano-Soto A , Moreno-Hagelsieb G , Janga SC , Ramirez MA , Jimenez-Jacinto V and Davila G <1 more author(s)> Gonzalez V , Santamaria RI , Bustos P , Hernandez-Gonzalez I , Medrano-Soto A , Moreno-Hagelsieb G , Janga SC , Ramirez MA , Jimenez-Jacinto V , Collado-Vides J , Davila G (- 1) Ref: Proc Natl Acad Sci U S A, 103 :3834, 2006 : PubMed Abstract ESTHER: Gonzalez_2006_Proc.Natl.Acad.Sci.U.S.A_103_3834 PubMedSearch: Gonzalez 2006 Proc.Natl.Acad.Sci.U.S.A 103 3834 PubMedID: 16505379 Gene_locus related to this paper: rhiec-q2jya1 ,
rhiec-q2jyb1 ,
rhiec-q2jyh1 ,
rhiec-q2jyi9 ,
rhiec-q2jyp5 ,
rhiec-q2jz13 ,
rhiec-q2jz28 ,
rhiec-q2jza1 ,
rhiec-q2jzn2 ,
rhiec-q2k0g7 ,
rhiec-q2k1i0 ,
rhiec-q2k1i2 ,
rhiec-q2k4a8 ,
rhiec-q2k4e5 ,
rhiec-q2k4j5 ,
rhiec-q2k4x3 ,
rhiec-q2k5i6 ,
rhiec-q2k5l4 ,
rhiec-q2k6p0 ,
rhiec-q2k7j2 ,
rhiec-q2k7j4 ,
rhiec-q2k7l8 ,
rhiec-q2k7y0 ,
rhiec-q2k8z8 ,
rhiec-q2k9h7 ,
rhiec-q2k046 ,
rhiec-q2k052 ,
rhiec-q2k107 ,
rhiec-q2k160 ,
rhiec-q2k168 ,
rhiec-q2k213 ,
rhiec-q2k218 ,
rhiec-q2k238 ,
rhiec-q2k582 ,
rhiec-q2k693 ,
rhiec-q2k741 ,
rhiec-q2k801 ,
rhiec-q2k847 ,
rhiec-q2ka74 ,
rhiec-q2kab3 ,
rhiec-q2kaf4 ,
rhiec-q2kav5 ,
rhiec-q2kb19 ,
rhiec-q2kb89 ,
rhiec-q2kb93 ,
rhiec-q2kcj7 ,
rhiec-q2kd15 ,
rhiec-q2kdc6 ,
rhiec-q2kdk4 ,
rhiec-q2kdz8 ,
rhiec-q2ke86 ,
rhiet-phbc ,
rhiet-YP061 ,
rhiec-q2k056 Abstract
We report the complete 6,530,228-bp genome sequence of the symbiotic nitrogen fixing bacterium Rhizobium etli. Six large plasmids comprise one-third of the total genome size. The chromosome encodes most functions necessary for cell growth, whereas few essential genes or complete metabolic pathways are located in plasmids. Chromosomal synteny is disrupted by genes related to insertion sequences, phages, plasmids, and cell-surface components. Plasmids do not show synteny, and their orthologs are mostly shared by accessory replicons of species with multipartite genomes. Some nodulation genes are predicted to be functionally related with chromosomal loci encoding for the external envelope of the bacterium. Several pieces of evidence suggest an exogenous origin for the symbiotic plasmid (p42d) and p42a. Additional putative horizontal gene transfer events might have contributed to expand the adaptive repertoire of R. etli, because they include genes involved in small molecule metabolism, transport, and transcriptional regulation. Twenty-three putative sigma factors, numerous isozymes, and paralogous families attest to the metabolic redundancy and the genomic plasticity necessary to sustain the lifestyle of R. etli in symbiosis and in the soil.
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