Gene_Locus Report

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Gene_locus Report for: rubgi-i0hx16

Rubrivivax gelatinosus; Rubrivivax benzoatilyticus Uncharacterized protein

Comment
Other strains: Rubrivivax gelatinosus (NBRC 100245 / IL144); Rubrivivax benzoatilyticus JA2 = ATCC BAA-35


Relationship
Family|abh_upf00227
Block| X
Position in NCBI Life Tree|Rubrivivax gelatinosus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Betaproteobacteria: N E > Burkholderiales: N E > unclassified Burkholderiales: N E > Burkholderiales Genera incertae sedis: N E > Rubrivivax: N E > Rubrivivax gelatinosus: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AP012320, AEWG01000102
2 UniProt : I0HX16, F3LRV8
2 UniProt : I0HX16, F3LRV8
2 Interpro : I0HX16, F3LRV8
2 Pfam : I0HX16, F3LRV8
2 PIRSF : I0HX16, F3LRV8
2 SUPERFAM : I0HX16, F3LRV8
Sequence
Graphical view for this peptide sequence: rubgi-i0hx16
Colored MSA for abh_upf00227 (raw)
MSGAPTHLLYLHGFRSSPQSAKARRVGAWLAEHRPELKFWSPQLPPSPRA
AVAMLLEGTADWPATSVVVGSSLGGFYATAVAEARGWTAGVLNPAVDPAR
DLAAYIGENKQFHKPEESFFFLPEYVDELRALRPPAITRPERYFAVVATG
DELLDWREMHARYAGATIRLVEGSDHALSDFDEHLPHLLRYLRLCD
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSGAPTHLLYLHGFRSSPQSAKARRVGAWLAEHRPELKFWSPQLPPSPRA
AVAMLLEGTADWPATSVVVGSSLGGFYATAVAEARGWTAGVLNPAVDPAR
DLAAYIGENKQFHKPEESFFFLPEYVDELRALRPPAITRPERYFAVVATG
DELLDWREMHARYAGATIRLVEGSDHALSDFDEHLPHLLRYLRLCD


Reference
    Title: Genome sequence of the phototrophic betaproteobacterium Rubrivivax benzoatilyticus strain JA2T
    Mohammed M, Isukapatla A, Mekala LP, Eedara Veera Venkata RP, Chintalapati S, Chintalapati VR
    Ref: Journal of Bacteriology, 193:2898, 2011 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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