Gene_Locus Report

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Gene_locus Report for: rubgi-i0hxc6

Rubrivivax gelatinosus (strain NBRC 100245 / IL144). D-(-)-3-hydroxybutyrate oligomer hydrolase

Relationship
Family|OHBut_olig_hydro_put
Block| X
Position in NCBI Life Tree|Rubrivivax gelatinosus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Betaproteobacteria: N E > Burkholderiales: N E > unclassified Burkholderiales: N E > Burkholderiales Genera incertae sedis: N E > Rubrivivax: N E > Rubrivivax gelatinosus: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AP012320, WP_014430511.1
1 UniProt : I0HXC6
1 UniProt : I0HXC6
1 Interpro : I0HXC6
1 Pfam : I0HXC6
1 PIRSF : I0HXC6
1 SUPERFAM : I0HXC6
Sequence
Graphical view for this peptide sequence: rubgi-i0hxc6
Colored MSA for OHBut_olig_hydro_put (raw)
MKHTPTWTAIAAACLLCAGAASAAPANTLPAGVRGPVTETVYDGVADDLL
TAGLGKTGLMGAAPAFADPLHPTPAELRRNAIYVNYRALVDYTAAGGMGV
FYGPNIDAEGRDTLGEGKVPGRETLAWYDDGSGLQNVTLMVQVPDRFDPA
RPCIVTATSSGSRGIYGAIGTAGEWGLKHGCAVAYTDKGSGNGQHELGAN
LVTLRDGRVVDAASAGTEALFRAPLSDAEREALLAQAPYRVAYKHAHSKQ
NPEADWGRHTLEAVRFAFWVLNERYGKVGRDGRREATLQPRNTIVIASSV
SNGGGAALAAAEQDREGLIDGVAVSEPNAQPRWMHGLAIREGDTPVATIG
RPLADYFTFANLYQPCALLAPAAGGGTAVASAFWPAAFTASAQNRCTALA
AKGLVAGATLAEQADDALARLHAYGWTTDADFLHQSHYRFATNSIATTYT
NAYGRFGVEDRLCGFSFANTDAAGTPIAPSASAVASIFSTGNGVPPTTGV
NIVYDASSGGAKLDFLAVSPGTGLADFALDGALCQRSLVTGRDAADRLLT
GAQREAAQRVRRGVTEVRLDGRLRGKPVLIVAGRSDALLPVNHTARAYYA
RVQAQGAADNVRYVEVTNAQHFDSFISLGAFLGYDARFIPLHVYFNRAMD
AMWAHLTQGAALPPSQVVHTVPRGGSPGAAPALTSANVPAIQAAPAEGAR
IVFGDGTLVVPK
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MKHTPTWTAIAAACLLCAGAASAAPANTLPAGVRGPVTETVYDGVADDLL
TAGLGKTGLMGAAPAFADPLHPTPAELRRNAIYVNYRALVDYTAAGGMGV
FYGPNIDAEGRDTLGEGKVPGRETLAWYDDGSGLQNVTLMVQVPDRFDPA
RPCIVTATSSGSRGIYGAIGTAGEWGLKHGCAVAYTDKGSGNGQHELGAN
LVTLRDGRVVDAASAGTEALFRAPLSDAEREALLAQAPYRVAYKHAHSKQ
NPEADWGRHTLEAVRFAFWVLNERYGKVGRDGRREATLQPRNTIVIASSV
SNGGGAALAAAEQDREGLIDGVAVSEPNAQPRWMHGLAIREGDTPVATIG
RPLADYFTFANLYQPCALLAPAAGGGTAVASAFWPAAFTASAQNRCTALA
AKGLVAGATLAEQADDALARLHAYGWTTDADFLHQSHYRFATNSIATTYT
NAYGRFGVEDRLCGFSFANTDAAGTPIAPSASAVASIFSTGNGVPPTTGV
NIVYDASSGGAKLDFLAVSPGTGLADFALDGALCQRSLVTGRDAADRLLT
GAQREAAQRVRRGVTEVRLDGRLRGKPVLIVAGRSDALLPVNHTARAYYA
RVQAQGAADNVRYVEVTNAQHFDSFISLGAFLGYDARFIPLHVYFNRAMD
AMWAHLTQGAALPPSQVVHTVPRGGSPGAAPALTSANVPAIQAAPAEGAR
IVFGDGTLVVPK


Reference
    Title: Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144
    Nagashima S, Kamimura A, Shimizu T, Nakamura-Isaki S, Aono E, Sakamoto K, Ichikawa N, Nakazawa H, Sekine M and Nagashima KV <4 more author(s)>
    Ref: Journal of Bacteriology, 194:3541, 2012 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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