Gene_locus Report for: selml-d8rzp6 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Lycopodiopsida: N E > Selaginellales: N E > Selaginellaceae: N E > Selaginella: N E > Selaginella moellendorffii: N E ABHD13-BEM46 :
selml-d8s7r2 Selaginella moellendorffii (Spikemoss). protein bem46-like .
ABHD18 :
selml-d8swp0 Selaginella moellendorffii (Spikemoss). Putative uncharacterized protein .
abh_upf0017 :
selml-d8rkl6 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein .
Acidic_Lipase :
selml-d8r6d4 Selaginella moellendorffii (Spikemoss) Lipase ,
selml-d8rck8 Selaginella moellendorffii (Spikemoss) Lipase ,
selml-d8rf38 Selaginella moellendorffii (Spikemoss) Lipase ,
selml-d8s2t1 Selaginella moellendorffii (Spikemoss) Lipase ,
selml-d8ssx7 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8t7a3 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein .
Chlorophyllase_Plant :
selml-d8qyh7 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8r504 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8r506 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8ru47 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8s3z8 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8s401 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein .
DPP4N_Peptidase_S9 :
selml-d8swp2 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein .
Duf_900 :
selml-d8rbi1 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8ry54 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein .
Duf_1350 :
selml-d8r338 Selaginella moellendorffii (Spikemoss), Putative uncharacterized protein ,
selml-d8rr00 Selaginella moellendorffii (Spikemoss), Putative uncharacterized protein .
Fusarinine_C_esterase_sidJ :
selml-d8rbs1 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein .
Glutamyl_Peptidase_S9 :
selml-d8ta80 Selaginella moellendorffii (Spikemoss). Peptidase_S9 domain-containing protein .
Maspardin-ACP33-SPG21_like :
selml-d8tdq6 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein .
Monoglyceridelipase_lysophospholip :
selml-d8s0c9 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8sch9 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8spq2 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein .
Ndr_family :
selml-d8rai8 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein SF21-2 .
NLS3-Tex30 :
selml-d8t8v4 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein .
Pectinacetylesterase-Notum :
selml-d8s7i0 Selaginella moellendorffii (Spikemoss). Putative uncharacterized protein ,
selml-d8qz37 Selaginella moellendorffii (Spikemoss). Putative uncharacterized protein ,
selml-d8sz00 Selaginella moellendorffii (Spikemoss). Putative uncharacterized protein ,
selml-d8s776 Selaginella moellendorffii (Spikemoss). Putative uncharacterized protein ,
selml-d8qw15 Selaginella moellendorffii (Spikemoss). Putative uncharacterized protein ,
selml-d8ska7 Selaginella moellendorffii (Spikemoss). Putative uncharacterized protein ,
selml-d8t0c4 Selaginella moellendorffii (Spikemoss). Putative uncharacterized protein ,
selml-d8r194 Selaginella moellendorffii (Spikemoss). Putative uncharacterized protein .
PMH_Peptidase_S9 :
selml-d8qva1 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8taz4 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein .
PPase_methylesterase_euk :
selml-d8qza0 Selaginella moellendorffii (Spikemoss) Protein phosphatase methylesterase 1 .
Proline_iminopeptidase :
selml-d8qt54 Selaginella moellendorffii (Spikemoss). Proline iminopeptidase ,
selml-d8r2d8 Selaginella moellendorffii (Spikemoss). Proline iminopeptidase ,
selml-d8rmd3 Selaginella moellendorffii (Spikemoss). Putative uncharacterized protein ,
selml-d8rra9 Selaginella moellendorffii (Spikemoss). Proline iminopeptidase ,
selml-d8slg4 Selaginella moellendorffii (Spikemoss). Putative uncharacterized protein .
Prolylcarboxypeptidase :
selml-d8qua5 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8r5d4 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8s0u3 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8sba6 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8sq37 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein .
S9N_PREPL_Peptidase_S9 :
selml-d8rpr1 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8rpy0 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein ,
selml-d8rzy7 Selaginella moellendorffii (Spikemoss) Putative uncharacterized protein .
UCP031088 :
selml-d8s5m8 Selaginella moellendorffii (Spikemoss). Uncharacterized protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: selml-d8rzp6 Colored MSA for S9N_PREPL_Peptidase_S9 (raw)
MIPPVAPRLKQEFELFGDSREDFYFWLRDDKRADQKVLAHLKAENAYTEQ
FEEEIFAEMKGRIKEDDTSVPVRDGPYFYYEKELEGKQYKVHCRRKIPGG
EGPGSIDEIMDDAQEEEVLLDENEKAASHKFYIVGDVQVSPDHTRLAYTE
DTVGDEIFSIYVVDIASKQLLGPVLKGAVEDIKWIDNESIAYVTQDDIHR
PYKAWYHKIGNEQSEDVCLYHEEDETCFLDMGSSESKEYTFVHSGTKTTS
FVLYLENKSPVKELKYLTPRVEGVDTSASHRGEHFFITKRTDDTYNSELY
VCPVNDVSSTTLVLPHRPSVKLEEVQAARDHLVVYERENALQSITVFKLP
PAGEPITSLDQGVRIKFPEAAYALSPKEFQFNSPILRYQYSSLSTPFSVY
DYDMETGKSMLKKRQEVLGGFQPEKYVTLRKWATAQDGTQVPISMVYRKD
LAKLDGSDPLLLYGYGSYEVCIDPDFRMNRLSLIDRGVTFAIAHIRGGGE
LGRKWYEDGKLTKKMNTFEDFIFCGEYLIANKFCAKDKLCIQGRSAGGLL
IGAALTMRPDLYRCAVAEVPFVDVLTTMLDSSIPLTTAEWEEWGDPRKKD
DYLYMKSYSPVDNVLPREYPDILVTGGLHDSRVAYWEPAKFVAKLRENKT
DKNLLLFKCDFGAGHSSMSGRFDKLKDLALSYTFILRSLGLATRSTSSL
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M I P P V A P R L K Q E F E L F G D S R E D F Y F W L R D D K R A D Q K V L A H L K A E N A Y T E Q F E E E I F A E M K G R I K E D D T S V P V R D G P Y F Y Y E K E L E G K Q Y K V H C R R K I P G G E G P G S I D E I M D D A Q E E E V L L D E N E K A A S H K F Y I V G D V Q V S P D H T R L A Y T E D T V G D E I F S I Y V V D I A S K Q L L G P V L K G A V E D I K W I D N E S I A Y V T Q D D I H R P Y K A W Y H K I G N E Q S E D V C L Y H E E D E T C F L D M G S S E S K E Y T F V H S G T K T T S F V L Y L E N K S P V K E L K Y L T P R V E G V D T S A S H R G E H F F I T K R T D D T Y N S E L Y V C P V N D V S S T T L V L P H R P S V K L E E V Q A A R D H L V V Y E R E N A L Q S I T V F K L P P A G E P I T S L D Q G V R I K F P E A A Y A L S P K E F Q F N S P I L R Y Q Y S S L S T P F S V Y D Y D M E T G K S M L K K R Q E V L G G F Q P E K Y V T L R K W A T A Q D G T Q V P I S M V Y R K D L A K L D G S D P L L L Y G Y G S Y E V C I D P D F R M N R L S L I D R G V T F A I A H I R G G G E L G R K W Y E D G K L T K K M N T F E D F I F C G E Y L I A N K F C A K D K L C I Q G R S A G G L L I G A A L T M R P D L Y R C A V A E V P F V D V L T T M L D S S I P L T T A E W E E W G D P R K K D D Y L Y M K S Y S P V D N V L P R E Y P D I L V T G G L H D S R V A Y W E P A K F V A K L R E N K T D K N L L L F K C D F G A G H S S M S G R F D K L K D L A L S Y T F I L R S L G L A T R S T S S L
Reference
Title: The Selaginella genome identifies genetic changes associated with the evolution of vascular plantsBanks JA , Nishiyama T , Hasebe M , Bowman JL , Gribskov M , dePamphilis C , Albert VA , Aono N , Aoyama T and Grigoriev IV <93 more author(s)> Banks JA , Nishiyama T , Hasebe M , Bowman JL , Gribskov M , dePamphilis C , Albert VA , Aono N , Aoyama T , Ambrose BA , Ashton NW , Axtell MJ , Barker E , Barker MS , Bennetzen JL , Bonawitz ND , Chapple C , Cheng C , Correa LG , Dacre M , DeBarry J , Dreyer I , Elias M , Engstrom EM , Estelle M , Feng L , Finet C , Floyd SK , Frommer WB , Fujita T , Gramzow L , Gutensohn M , Harholt J , Hattori M , Heyl A , Hirai T , Hiwatashi Y , Ishikawa M , Iwata M , Karol KG , Koehler B , Kolukisaoglu U , Kubo M , Kurata T , Lalonde S , Li K , Li Y , Litt A , Lyons E , Manning G , Maruyama T , Michael TP , Mikami K , Miyazaki S , Morinaga S , Murata T , Mueller-Roeber B , Nelson DR , Obara M , Oguri Y , Olmstead RG , Onodera N , Petersen BL , Pils B , Prigge M , Rensing SA , Riano-Pachon DM , Roberts AW , Sato Y , Scheller HV , Schulz B , Schulz C , Shakirov EV , Shibagaki N , Shinohara N , Shippen DE , Sorensen I , Sotooka R , Sugimoto N , Sugita M , Sumikawa N , Tanurdzic M , Theissen G , Ulvskov P , Wakazuki S , Weng JK , Willats WW , Wipf D , Wolf PG , Yang L , Zimmer AD , Zhu Q , Mitros T , Hellsten U , Loque D , Otillar R , Salamov A , Schmutz J , Shapiro H , Lindquist E , Lucas S , Rokhsar D , Grigoriev IV (- 93) Ref: Science, 332 :960, 2011 : PubMed Abstract ESTHER: Banks_2011_Science_332_960 PubMedSearch: Banks 2011 Science 332 960 PubMedID: 21551031 Gene_locus related to this paper: selml-d8qua5 ,
selml-d8qva1 ,
selml-d8qyh7 ,
selml-d8qza0 ,
selml-d8r5d4 ,
selml-d8r6d4 ,
selml-d8r504 ,
selml-d8r506 ,
selml-d8rbi1 ,
selml-d8rbs1 ,
selml-d8rck8 ,
selml-d8rf38 ,
selml-d8rkl6 ,
selml-d8rpr1 ,
selml-d8rpy0 ,
selml-d8ru47 ,
selml-d8ry54 ,
selml-d8rzp6 ,
selml-d8rzy7 ,
selml-d8s0c9 ,
selml-d8s0u3 ,
selml-d8s2t1 ,
selml-d8s3z8 ,
selml-d8s401 ,
selml-d8sba6 ,
selml-d8sch9 ,
selml-d8spq2 ,
selml-d8sq37 ,
selml-d8ssx7 ,
selml-d8swp2 ,
selml-d8t7a3 ,
selml-d8t8v4 ,
selml-d8taz4 ,
selml-d8tdq6 ,
selml-d8rai8 ,
selml-d8qt54 ,
selml-d8r2d8 ,
selml-d8rmd3 ,
selml-d8rra9 ,
selml-d8slg4 ,
selml-d8swp0 ,
selml-d8s7i0 ,
selml-d8qz37 ,
selml-d8sz00 ,
selml-d8s776 ,
selml-d8qw15 ,
selml-d8ska7 ,
selml-d8t0c4 ,
selml-d8r194 ,
selml-d8s5m8 ,
selml-d8s7r2 ,
selml-d8ta80 Abstract
Vascular plants appeared ~410 million years ago, then diverged into several lineages of which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes. We report here the genome sequence of the lycophyte Selaginella moellendorffii (Selaginella), the first nonseed vascular plant genome reported. By comparing gene content in evolutionarily diverse taxa, we found that the transition from a gametophyte- to a sporophyte-dominated life cycle required far fewer new genes than the transition from a nonseed vascular to a flowering plant, whereas secondary metabolic genes expanded extensively and in parallel in the lycophyte and angiosperm lineages. Selaginella differs in posttranscriptional gene regulation, including small RNA regulation of repetitive elements, an absence of the trans-acting small interfering RNA pathway, and extensive RNA editing of organellar genes.
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