(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) > cellular organisms: NE > Eukaryota: NE > Viridiplantae: NE > Streptophyta: NE > Streptophytina: NE > Embryophyta: NE > Tracheophyta: NE > Euphyllophyta: NE > Spermatophyta: NE > Magnoliophyta: NE > Mesangiospermae: NE > Liliopsida: NE > Petrosaviidae: NE > commelinids: NE > Poales: NE > Poaceae: NE > PACMAD clade: NE > Panicoideae: NE > Panicodae: NE > Paniceae: NE > Cenchrinae: NE > Setaria: NE > Setaria viridis: NE
LegendThis sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA MVGWLKALAYGAGGVAVAGLAALVALQERLVYVPVLPGLARAYPITPARL RLAYEDVWLRAADGVRLHSWFIRHSPTCRGPTILFFQENAGNIAHRLEFV RLMMQRLQCNVFMLSYRGYGESDGYPSQKGITYDAQAALDHLAQRKDIDT SRIVIFGRSLGGAVGAVLAKNNPDKVAALILENTFTSILDMAGIMLPFLR WFIGGSSSKGPKLLNCVVRSPWSTLDIVGEVNQPILFLSGLQDELVPPSH MKMLYDKAVEHNRTCRFIDFPSGMHMDTWMSGGDRYWRAIQLFLDQYAPE VQSHDASFKSEIAEDGEAAG
We generated a high-quality reference genome sequence for foxtail millet (Setaria italica). The approximately 400-Mb assembly covers approximately 80% of the genome and >95% of the gene space. The assembly was anchored to a 992-locus genetic map and was annotated by comparison with >1.3 million expressed sequence tag reads. We produced more than 580 million RNA-Seq reads to facilitate expression analyses. We also sequenced Setaria viridis, the ancestral wild relative of S. italica, and identified regions of differential single-nucleotide polymorphism density, distribution of transposable elements, small RNA content, chromosomal rearrangement and segregation distortion. The genus Setaria includes natural and cultivated species that demonstrate a wide capacity for adaptation. The genetic basis of this adaptation was investigated by comparing five sequenced grass genomes. We also used the diploid Setaria genome to evaluate the ongoing genome assembly of a related polyploid, switchgrass (Panicum virgatum).
