shifl-YPFH

 
Shigella flexneri, Shigella sonnei, Shigella boydii, Shigella dysenteriae, ypfh hypothetical 24.9 kda protein

Comment
Other strains: Shigella flexner (serotype 5b (strain 8401)serotype X (strain 2002017)), Shigella sonnei (strain Ss046) Shigella boydii (serotype 4 (strain Sb227); serotype 18 (strain CDC 3083-94 / BS512)) Shigella dysenteriae serotype 1 (strain Sd197) (strain UTI89 / UPEC) Shigella boydii


Relationship
Block X
Shigella flexneri position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Enterobacterales: N E > Enterobacteriaceae: N E > Shigella: N E > Shigella flexneri: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



>3 Genbank links 6 more: AE005674, AE016986, AE015267
>3 UniProt links 5 more: Q83K55, Q3YZ79, B2TXP9
>3 UniProtTrembl links 5 more: Q83K55, Q3YZ79, B2TXP9
>3 Interpro links 5 more: Q83K55, Q3YZ79, B2TXP9
>3 Prodom links 5 more: Q83K55, Q3YZ79, B2TXP9
>3 Pfam links 5 more: Q83K55, Q3YZ79, B2TXP9
>3 PIRSF links 5 more: Q83K55, Q3YZ79, B2TXP9
>3 SUPERFAM links 5 more: Q83K55, Q3YZ79, B2TXP9
>3 QuickSwissBlast links 5 more: Q83K55, Q3YZ79, B2TXP9
 
Sequence
Graphical view for this peptide sequence: shifl-YPFH
Colored MSA for LYsophospholipase_carboxylesterase (raw)
MTSVKEFAMKHDHFVVQSPDKPAQQLLLLFHGVGDNPVAMGEIGSWFAPL
FPDALVVSVGGAEPSGNPAGRQWFSVQGITEDNRQARVDAIMPTFIETVR
YWQKQSGVGANATALIGFSQGAIMALESIKAEPGLASRVIAFNGRYASLP
ETASTATTIHLIHGGEDPVIDLAHAVAAQEALISAGGDVTLDIVEDLGHA
IDNRSMQFALDHLRYTIPKHYFDQALSGGKPGDDDVIEMM
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MTSVKEFAMKHDHFVVQSPDKPAQQLLLLFHGVGDNPVAMGEIGSWFAPL
FPDALVVSVGGAEPSGNPAGRQWFSVQGITEDNRQARVDAIMPTFIETVR
YWQKQSGVGANATALIGFSQGAIMALESIKAEPGLASRVIAFNGRYASLP
ETASTATTIHLIHGGEDPVIDLAHAVAAQEALISAGGDVTLDIVEDLGHA
IDNRSMQFALDHLRYTIPKHYFDQALSGGKPGDDDVIEMM

no DNA




References
2 more
    Title: Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery
    Yang F, Yang J, Zhang X, Chen L, Jiang Y, Yan Y, Tang X, Wang J, Xiong Z and Jin Q <17 more author(s)>
    Ref: Nucleic Acids Research, 33:6445, 2005 : PubMed

            

    Title: Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T
    Wei J, Goldberg MB, Burland V, Venkatesan MM, Deng W, Fournier G, Mayhew GF, Plunkett G, 3rd, Rose DJ and Blattner FR <7 more author(s)>
    Ref: Infect Immun, 71:2775, 2003 : PubMed

            

    Title: Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157
    Jin Q, Yuan Z, Xu J, Wang Y, Shen Y, Lu W, Wang J, Liu H, Yang J and Yu J <23 more author(s)>
    Ref: Nucleic Acids Research, 30:4432, 2002 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer