Gene_locus Report for: sorc5-a9fw17 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) PE_PGRS family protein
Comment
n-term 100 low complexity deleted here Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > delta/epsilon subdivisions: N E > Deltaproteobacteria: N E > Myxococcales: N E > Sorangiineae: N E > Polyangiaceae: N E > Sorangium: N E > Sorangium cellulosum: N E 6_AlphaBeta_hydrolase :
sorc5-a9gj93 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strai Putative uncharacterized protein ,
sorc5-a9glv5 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strai Putative uncharacterized protein ,
sorc5-a9gqy4 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein ,
sorc5-a9grt6 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative hydrolase .
A85-Feruloyl-Esterase :
sorc5-a9fpe7 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein .
A85-IroE-IroD-Fes-Yiel :
sorc5-a9eur8 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein ,
sorc5-a9fd82 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein ,
sorc5-a9fg26 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative esterase .
Abhydr_predicted :
sorc5-a9guw3 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Probable lipase .
abh_upf0017 :
sorc5-a9g651 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein yheT ,
sorc5-a9grk3 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein .
abh_upf00227 :
sorc5-a9ev65 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)). Uncharacterized protein .
Bacterial_lip_FamI.1 :
sorc5-a9grj0 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Triacylglycerol lipase .
Carb_B_Bacteria :
sorce-a0a2l0ehz6 Sorangium cellulosum (Polyangium cellulosum). Carboxylesterase ,
sorce-a0a2l0ei15 Sorangium cellulosum (Polyangium cellulosum). Carboxylesterase ,
sorc5-a9fec8 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum) Putative carboxylesterase ,
sorce-a0a150pa92 Sorangium cellulosum (Polyangium cellulosum). Carboxylic ester hydrolase ,
sorce-a0a150qbw0 Sorangium cellulosum (Polyangium cellulosum). Carboxylic ester hydrolase ,
sorce-a0a150qx83 Sorangium cellulosum (Polyangium cellulosum). Carboxylic ester hydrolase ,
sorce-a0a150rrw2 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150rvb5 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150s4a3 Sorangium cellulosum (Polyangium cellulosum). Carboxylic ester hydrolase .
Chlorophyllase :
sorce-a0a150qhw0 Sorangium cellulosum (Polyangium cellulosum). Chlorophyllase ,
sorce-a0a150qjp0 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150qyc1 Sorangium cellulosum (Polyangium cellulosum). Chlorophyllase ,
sorce-a0a150s6b9 Sorangium cellulosum (Polyangium cellulosum). Chlorophyllase ,
sorc5-a9gut3 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)). Uncharacterized protein .
DLH-S :
sorc5-a9g9n9 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein .
DPP4N_Peptidase_S9 :
sorc5-a9f2w6 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein .
Epoxide_hydrolase :
sorc5-a9ewe7 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein ,
sorc5-a9grp4 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Epoxide hydrolase .
Esterase_phb :
sorc5-ce1 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)). Multiple nucleophilic elbowed esterase .
FaeC :
sorce-a0a150q618 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150qbg3 Sorangium cellulosum (Polyangium cellulosum). Abhydrolase_2 domain-containing protein ,
sorce-a0a150qjw6 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150sbl5 Sorangium cellulosum (Polyangium cellulosum). Ricin and poly(3-hydroxybutyrate) depolymerase fusion ,
sorce-a0a150sd47 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150tpv7 Sorangium cellulosum (Polyangium cellulosum). Ricin and poly(3-hydroxybutyrate) depolymerase fusion ,
sorce-a0a2l0ema2 Sorangium cellulosum (Polyangium cellulosum). Ricin and Poly(3-hydroxybutyrate) depolymerase fusion ,
sorce-a0a2l0eme4 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a2l0eqx4 Sorangium cellulosum (Polyangium cellulosum). PHB depolymerase ,
sorce-a0a4p2pua2 Sorangium cellulosum (Polyangium cellulosum). PHB depolymerase ,
sorce-a0a4p2qf23 Sorangium cellulosum (Polyangium cellulosum). Peptidase_S9 domain-containing protein ,
sorce-a0a4p2qu34 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorc5-a9env4 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)). Ricin and Poly(3-hydroxybutyrate) depolymerase fusion ,
sorc5-a9fai0 Sorangium cellulosum (Polyangium cellulosum (strain So ce56)). Putative secreted protein ,
sorc5-a9g908 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)). Esterase ,
sorc5-a9gmg6 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)). Esterase/lipase/thioesterase family protein ,
sorce-s4xiz9 Sorangium cellulosum. Peptidase_S9 domain-containing protein .
Glucuronoyl_esterase :
sorc5-a9ev31 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein ,
sorc5-a9fwe6 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative topoisomerase ,
sorc5-a9fya1 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein ,
sorce-a0a150qq30 Sorangium cellulosum (Polyangium cellulosum) Dockerin-like protein ,
sorce-a0a150q1c9 Sorangium cellulosum (Polyangium cellulosum) Uncharacterized protein ,
sorce-a0a150q8m4 Sorangium cellulosum (Polyangium cellulosum) Uncharacterized protein .
Haloalkane_dehalogenase-HLD1 :
sorc5-a9fvz2 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Haloalkane dehalogenase .
HNLyase_Bact :
sorc5-a9enf0 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Hydrolase, alpha/beta fold family protein .
Monoglyceridelipase_lysophospholip :
sorc5-a9eu04 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Hydrolase .
NLS3-Tex30 :
sorc5-a9fw70 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein .
Pectinacetylesterase-Notum :
sorc5-a9en84 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Pectinacetylesterase, putative .
Peptidase_S37 :
sorc5-a9gy73 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative secreted tripeptidyl aminopeptidase ,
sorce-a0a150pf15 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150q4e7 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150qgy5 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150qmz4 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150re86 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150s893 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150sbs8 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150sdi6 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150smf3 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150tit3 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150tth1 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a2l0f982 Sorangium cellulosum (Polyangium cellulosum). Tripeptidyl aminopeptidase .
Polyesterase-lipase-cutinase :
sorce-a0a150psv4 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150q4e8 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150qsw4 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorce-a0a150rzb6 Sorangium cellulosum (Polyangium cellulosum). Uncharacterized protein ,
sorc5-a9fcj4 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)). Putative esterase/lipase/thioesterase .
Proline_iminopeptidase :
sorc5-a9glc5 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Predicted proline iminopeptidase ,
sorc5-a9fsu5 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)). Proline iminopeptidase ,
sorc5-a9gq11 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)). Putative hydrolase .
Triacylglycerol-lipase-OBL1-like :
sorce-a0a150p2y4 Sorangium cellulosum (Polyangium cellulosum). Lipase_3 domain-containing protein ,
sorce-a0a150puw8 Sorangium cellulosum (Polyangium cellulosum). Lipase_3 domain-containing protein ,
sorce-a0a150quq6 Sorangium cellulosum (Polyangium cellulosum). Lipase_3 domain-containing protein ,
sorce-a0a150ssu9 Sorangium cellulosum (Polyangium cellulosum). Lipase_3 domain-containing protein .
UCP031982 :
sorc5-a9fjh7 Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) Putative uncharacterized protein Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can
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(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Sorangium cellulosum 'So ce 56':
N ,
E .
Sorangium cellulosum So ce56:
N ,
E .
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: sorc5-a9fw17 Colored MSA for Glucuronoyl_esterase (raw)
PGAGCTVGPMPSVASLTANSKLPDPFKKMDGSRIASKSEWACRREEILQQ
AYKFIYGDKPVPAKGSVSGTVSTSRITVEVKDGGGSGSFNLTVNMNGATA
PAPAIIGYGGLSGMPVPSGVATITFTAIESTGTSGAKNGPFYSVYGSDHP
AGYLTAQAWQISRVLDVLEQNPGVIDPRRVGVTGCSRWGKGAFVAGVLDN
RIALTIPVESGLGGTIGLRLVEVLDSYSGSEWPYHGISYVRWLSEVALGQ
FTTGNNAGADNTNKLPVDMHEMMGLIAPRGLYIVDNPSTMYNGLDRNSAW
VTANVGKMIFEALGVGNHIAYTGAGGSHCSWRSQYTASLNAMVDKFLKGN
NAAATGNFATDLPNKPNHMDHIDWTPPTLAGEL
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
P G A G C T V G P M P S V A S L T A N S K L P D P F K K M D G S R I A S K S E W A C R R E E I L Q Q A Y K F I Y G D K P V P A K G S V S G T V S T S R I T V E V K D G G G S G S F N L T V N M N G A T A P A P A I I G Y G G L S G M P V P S G V A T I T F T A I E S T G T S G A K N G P F Y S V Y G S D H P A G Y L T A Q A W Q I S R V L D V L E Q N P G V I D P R R V G V T G C S R W G K G A F V A G V L D N R I A L T I P V E S G L G G T I G L R L V E V L D S Y S G S E W P Y H G I S Y V R W L S E V A L G Q F T T G N N A G A D N T N K L P V D M H E M M G L I A P R G L Y I V D N P S T M Y N G L D R N S A W V T A N V G K M I F E A L G V G N H I A Y T G A G G S H C S W R S Q Y T A S L N A M V D K F L K G N N A A A T G N F A T D L P N K P N H M D H I D W T P P T L A G E L
Reference
Title: Complete genome sequence of the myxobacterium Sorangium cellulosumSchneiker S , Perlova O , Kaiser O , Gerth K , Alici A , Altmeyer MO , Bartels D , Bekel T , Beyer S and Muller R <48 more author(s)> Schneiker S , Perlova O , Kaiser O , Gerth K , Alici A , Altmeyer MO , Bartels D , Bekel T , Beyer S , Bode E , Bode HB , Bolten CJ , Choudhuri JV , Doss S , Elnakady YA , Frank B , Gaigalat L , Goesmann A , Groeger C , Gross F , Jelsbak L , Kalinowski J , Kegler C , Knauber T , Konietzny S , Kopp M , Krause L , Krug D , Linke B , Mahmud T , Martinez-Arias R , McHardy AC , Merai M , Meyer F , Mormann S , Munoz-Dorado J , Perez J , Pradella S , Rachid S , Raddatz G , Rosenau F , Ruckert C , Sasse F , Scharfe M , Schuster SC , Suen G , Treuner-Lange A , Velicer GJ , Vorholter FJ , Weissman KJ , Welch RD , Wenzel SC , Whitworth DE , Wilhelm S , Wittmann C , Blocker H , Puhler A , Muller R (- 48) Ref: Nat Biotechnol, 25 :1281, 2007 : PubMed Abstract ESTHER: Schneiker_2007_Nat.Biotechnol_25_1281 PubMedSearch: Schneiker 2007 Nat.Biotechnol 25 1281 PubMedID: 17965706 Gene_locus related to this paper: sorc5-a9en84 ,
sorc5-a9enf0 ,
sorc5-a9eu04 ,
sorc5-a9eur8 ,
sorc5-a9ev31 ,
sorc5-a9ewe7 ,
sorc5-a9f2w6 ,
sorc5-a9fd82 ,
sorc5-a9fec8 ,
sorc5-a9fg26 ,
sorc5-a9fjh7 ,
sorc5-a9fpe7 ,
sorc5-a9fvz2 ,
sorc5-a9fw17 ,
sorc5-a9fw70 ,
sorc5-a9fwe6 ,
sorc5-a9fya1 ,
sorc5-a9g9n9 ,
sorc5-a9g651 ,
sorc5-a9gj93 ,
sorc5-a9glc5 ,
sorc5-a9glv5 ,
sorc5-a9gqy4 ,
sorc5-a9grj0 ,
sorc5-a9grk3 ,
sorc5-a9grp4 ,
sorc5-a9grt6 ,
sorc5-a9guw3 ,
sorc5-a9gy73 ,
sorce-q2n3s7 ,
sorc5-a9fsu5 ,
sorc5-a9gq11 ,
sorc5-a9ev65 ,
sorc5-a9fcj4 ,
sorc5-a9gut3 ,
sorc5-a9env4 ,
sorc5-a9fai0 ,
sorc5-a9g908 ,
sorc5-a9gmg6 ,
sorc5-ce1 Abstract
The genus Sorangium synthesizes approximately half of the secondary metabolites isolated from myxobacteria, including the anti-cancer metabolite epothilone. We report the complete genome sequence of the model Sorangium strain S. cellulosum So ce56, which produces several natural products and has morphological and physiological properties typical of the genus. The circular genome, comprising 13,033,779 base pairs, is the largest bacterial genome sequenced to date. No global synteny with the genome of Myxococcus xanthus is apparent, revealing an unanticipated level of divergence between these myxobacteria. A large percentage of the genome is devoted to regulation, particularly post-translational phosphorylation, which probably supports the strain's complex, social lifestyle. This regulatory network includes the highest number of eukaryotic protein kinase-like kinases discovered in any organism. Seventeen secondary metabolite loci are encoded in the genome, as well as many enzymes with potential utility in industry.
Other Papers
