Gene_locus Report for: soybn-a0a0r0i9y7 Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean). Uncharacterized protein
Comment
Other strains: Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean) Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > fabids: N E > Fabales: N E > Fabaceae: N E > Papilionoideae: N E > Phaseoleae: N E > Glycine: N E > Soja: N E > Glycine max: N E 6_AlphaBeta_hydrolase :
soybn-c6t888 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein .
A85-EsteraseD-FGH :
soybn-c6ta09 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tb50 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein .
ABHD13-BEM46 :
soybn-i1ly30 Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean). Alpha/beta hydrolase domain-containing protein WAV2 .
Acidic_Lipase :
soybn-k7n361 Glycine max (Soybean) (Glycine hispida) lipase .
Bodyguard :
soybn-i1lbx8 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein .
Carboxypeptidase_S10 :
soybn-c6tag8 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-i1jgq5 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-i1kwe7 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-i1ll09 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-i1lpi4 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein .
CGI-58_ABHD5_ABHD4 :
soybn-c6tem2 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein .
Chlorophyllase_Plant :
soybn-c6tmg3 Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean) Putative uncharacterized protein ,
soybn-i1l7e3 Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean) Uncharacterized protein ,
soybn-i1l497 Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean) Uncharacterized protein .
CMBL :
soybn-i1kfz9 Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean). Carboxymethylenebutenolidase-like .
Duf_1350 :
soybn-a0a0r0fra0 Glycine max (Soybean); Glycine hispida, Putative uncharacterized protein ,
soybn-i1kwx5 Glycine max (Soybean)(Glycine hispida), Putative uncharacterized protein .
Epoxide_hydrolase :
soybn-GmEH3 Glycine max (Soybean) (Glycine hispida) epoxide_hydrolase ,
soybn-epoxy Glycine max (Soybean) (Glycine hispida) epoxide hydrolase ,
soybn-c6t8a0 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6t8y6 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tcc6 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tgj4 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6thu0 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tk81 Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean) Epoxide hydrolase A ,
soybn-c6tky2 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tnc5 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein .
Fusarinine_C_esterase_sidJ :
soybn-c6tiz7 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein .
Glutamyl_Peptidase_S9 :
soybn-i1jqs1 Glycine max (Soybean) (Glycine hispida). Peptidase_S9 domain-containing protein ,
soybn-i1nbc7 Glycine max (Soybean) (Glycine hispida). Peptidase_S9 domain-containing protein .
Hydroxynitrile_lyase :
soybn-c6t4m5 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6t4p4 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6t802 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tav4 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tb10 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tji9 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tm24 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-i1jcw2 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-i1jcw3 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-i1jcw4 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-i1jcw7 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-i1k217 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-i1kfz3 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-i1lhi0 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-k7k6s4 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein .
Maspardin-ACP33-SPG21_like :
soybn-c6tdf9 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein .
Monoglyceridelipase_lysophospholip :
soybn-c6tjj2 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tnv1 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein .
Ndr_family :
soybn-i1jtw1 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-c6tas4 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-c6thk5 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-i1m910 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-c6t7k8 Glycine max (Soybean) (Glycine hispida); Glycine soja (Soybean) Uncharacterized protein ,
soybn-i1k636 Glycine max (Soybean) (Glycine hispida); Glycine max (Soybean); Glycine soja (Wild soybean) Uncharacterized protein ,
soybn-i1kju7 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-i1j4c6 Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean) Pollen-specific protein SF21 ,
soybn-i1lbk2 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein .
NLS3-Tex30 :
soybn-i1kpj2 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein .
Pectinacetylesterase-Notum :
soybn-i1jqy5 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1nbj8 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1j855 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1l5a3 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-k7mt28 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1lau7 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1lay0 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1net3 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1jr09 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1ms08 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1mmh5 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1mly5 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1mmh3 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1mmh4 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1ngu7 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-k7ll20 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1mly4 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein .
Pheophytinase :
soybn-i1l5j6 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein ,
soybn-i1lkf7 Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean) Uncharacterized protein ,
soybn-i1lnz2 Glycine max (Soybean) (Glycine hispida) Uncharacterized protein .
Plant_carboxylesterase :
soybn-q5nuf3 Glycine max (Soybean) 2-hydroxyisoflavanone dehydratase ,
soybn-i1kfj1 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-a0a0r0k7x4 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1mwr8 Glycine max (Soybean) (Glycine hispida). Abhydrolase_3 domain-containing protein ,
soybn-i1kfg5 Glycine max (Soybean) (Glycine hispida). Abhydrolase_3 domain-containing protein ,
soybn-i1kly2 Glycine max (Soybean) (Glycine hispida). Abhydrolase_3 domain-containing protein ,
soybn-a0a0r0ixi2 Glycine max (Soybean) (Glycine hispida). Abhydrolase_3 domain-containing protein ,
soybn-i1jew0 Glycine max (Soybean) (Glycine hispida). Abhydrolase_3 domain-containing protein .
Plant_lipase_EDS1-like :
soybn-i1jx17 Glycine max (Soybean) (Glycine hispida). . Protein EDS1 ,
soybn-k7kvv2 Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean). Protein EDS1L ,
soybn-i1kcl6 Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean). Protein EDS1L ,
soybn-i1kcl7 Glycine max (Soybean) (Glycine hispida); Glycine soja (Wild soybean). Protein EDS1B .
Proline_iminopeptidase :
soybn-c6tjl4 Glycine max (Soybean) (Glycine hispida). Putative uncharacterized protein .
Prolylcarboxypeptidase :
soybn-c6t8y7 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tkc9 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein .
RsbQ-like :
soybn-KAI2B.2 Glycine max (Soybean) (Glycine hispida) KAI2B.2 AB hydrolase-1 domain-containing protein ,
soybn-KAI2B.1 Glycine max (Soybean) (Glycine hispida) KAI2B.1 AB hydrolase-1 domain-containing protein ,
soybn-KAI2A.2 Glycine max (Soybean) (Glycine hispida) KAI2A.2 AB hydrolase-1 domain-containing protein ,
soybn-KAI2A.1 Glycine max (Soybean) (Glycine hispida) KAI2A.1 AB hydrolase-1 domain-containing protein ,
soybn-c6t8p2 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tix9 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tkx7 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein ,
soybn-c6tlg3 Glycine max (Soybean) (Glycine hispida) Putative uncharacterized protein .
Triacylglycerol-lipase-OBL1-like :
soybn-k7mm57 Glycine max (Soybean) (Glycine hispida). Lipase_3 domain-containing protein ,
soybn-a0a0r0fec7 Glycine max (Soybean) (Glycine hispida). Lipase_3 domain-containing protein ,
soybn-a0a0r0hcn9 Glycine max (Soybean) (Glycine hispida). Lipase_3 domain-containing protein .
UCP031088 :
soybn-a0a0r0j241 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-i1les8 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein ,
soybn-k7n313 Glycine max (Soybean) (Glycine hispida). Uncharacterized protein Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can
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(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Glycine soja:
N ,
E .
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: soybn-a0a0r0i9y7 Colored MSA for UCP031088 (raw)
MLLNHIGAGFCWVDPPRPDPNPRTRIGPSRFHRRGASTPRPARHAAFHGA
RMEKKGGKRRSICTADELHRVAVSNSNWKLALWRYRPSPEALSRNHPLLL
LSGVATNAIGYDLSPESSFARYMSAQGFDTWILEVRGAGLSTLGDSLEED
EECLKNFSKIDSVINDDIGESSASFVSEVPHMKTRGSEVVTKYEEMQLMT
RFMEILTRISERLAGFLNGDLLEGQNSAIAGQIKDFNRRLRAIIEGQLLF
PAKILELQDRFAANLEEFQKQLELMVKYDWDFDHYLEEDVPAAMEYIRAQ
CQPRDGKLLAIGHSMGGILLYAMLSSCFMSGFDGKDPGLASVVTLASSLD
YTPSRSSLKLLLPLAEPTRVLNIPVIPVGPLMATVHPLASYPPYVLSWLN
SQISAQDMMDQKLFEKLVLNNFGTVPSKLLLQLSSVFQKGGLRDRSGTFF
YKDHLHKSNVPVLAIAGDRDLICPPEAVYETVKLIPDELVTYKVFGEPGG
PHYAHYDLVGGRLAADQLYPCITEFLIHHDTV
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M L L N H I G A G F C W V D P P R P D P N P R T R I G P S R F H R R G A S T P R P A R H A A F H G A R M E K K G G K R R S I C T A D E L H R V A V S N S N W K L A L W R Y R P S P E A L S R N H P L L L L S G V A T N A I G Y D L S P E S S F A R Y M S A Q G F D T W I L E V R G A G L S T L G D S L E E D E E C L K N F S K I D S V I N D D I G E S S A S F V S E V P H M K T R G S E V V T K Y E E M Q L M T R F M E I L T R I S E R L A G F L N G D L L E G Q N S A I A G Q I K D F N R R L R A I I E G Q L L F P A K I L E L Q D R F A A N L E E F Q K Q L E L M V K Y D W D F D H Y L E E D V P A A M E Y I R A Q C Q P R D G K L L A I G H S M G G I L L Y A M L S S C F M S G F D G K D P G L A S V V T L A S S L D Y T P S R S S L K L L L P L A E P T R V L N I P V I P V G P L M A T V H P L A S Y P P Y V L S W L N S Q I S A Q D M M D Q K L F E K L V L N N F G T V P S K L L L Q L S S V F Q K G G L R D R S G T F F Y K D H L H K S N V P V L A I A G D R D L I C P P E A V Y E T V K L I P D E L V T Y K V F G E P G G P H Y A H Y D L V G G R L A A D Q L Y P C I T E F L I H H D T V
References
Title: Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencingQi X , Li MW , Xie M , Liu X , Ni M , Shao G , Song C , Kay-Yuen Yim A , Tao Y and Lam HM <19 more author(s)> Qi X , Li MW , Xie M , Liu X , Ni M , Shao G , Song C , Kay-Yuen Yim A , Tao Y , Wong FL , Isobe S , Wong CF , Wong KS , Xu C , Li C , Wang Y , Guan R , Sun F , Fan G , Xiao Z , Zhou F , Phang TH , Tong SW , Chan TF , Yiu SM , Tabata S , Wang J , Xu X , Lam HM (- 19) Ref: Nat Commun, 5 :4340, 2014 : PubMed Abstract ESTHER: Qi_2014_Nat.Commun_5_4340 PubMedSearch: Qi 2014 Nat.Commun 5 4340 PubMedID: 25004933 Gene_locus related to this paper: soybn-i1k636 ,
soybn-i1j4c6 ,
glyso-a0a0b2sjw6 ,
soybn-a0a0r0i9y7 ,
soybn-a0a0r0j241 ,
soybn-i1kfz9 ,
glyso-a0a0b2rre9 ,
soybn-i1jx17 Abstract
Using a whole-genome-sequencing approach to explore germplasm resources can serve as an important strategy for crop improvement, especially in investigating wild accessions that may contain useful genetic resources that have been lost during the domestication process. Here we sequence and assemble a draft genome of wild soybean and construct a recombinant inbred population for genotyping-by-sequencing and phenotypic analyses to identify multiple QTLs relevant to traits of interest in agriculture. We use a combination of de novo sequencing data from this work and our previous germplasm re-sequencing data to identify a novel ion transporter gene, GmCHX1, and relate its sequence alterations to salt tolerance. Rapid gain-of-function tests show the protective effects of GmCHX1 towards salt stress. This combination of whole-genome de novo sequencing, high-density-marker QTL mapping by re-sequencing and functional analyses can serve as an effective strategy to unveil novel genomic information in wild soybean to facilitate crop improvement.
Title: Genome sequence of the palaeopolyploid soybeanSchmutz J , Cannon SB , Schlueter J , Ma J , Mitros T , Nelson W , Hyten DL , Song Q , Thelen JJ and Jackson SA <35 more author(s)> Schmutz J , Cannon SB , Schlueter J , Ma J , Mitros T , Nelson W , Hyten DL , Song Q , Thelen JJ , Cheng J , Xu D , Hellsten U , May GD , Yu Y , Sakurai T , Umezawa T , Bhattacharyya MK , Sandhu D , Valliyodan B , Lindquist E , Peto M , Grant D , Shu S , Goodstein D , Barry K , Futrell-Griggs M , Abernathy B , Du J , Tian Z , Zhu L , Gill N , Joshi T , Libault M , Sethuraman A , Zhang XC , Shinozaki K , Nguyen HT , Wing RA , Cregan P , Specht J , Grimwood J , Rokhsar D , Stacey G , Shoemaker RC , Jackson SA (- 35) Ref: Nature, 463 :178, 2010 : PubMed Abstract ESTHER: Schmutz_2010_Nature_463_178 PubMedSearch: Schmutz 2010 Nature 463 178 PubMedID: 20075913 Gene_locus related to this paper: soybn-c6t4m5 ,
soybn-c6t4p4 ,
soybn-c6tav4 ,
soybn-c6tdf9 ,
soybn-c6tiz7 ,
soybn-c6tmg3 ,
soybn-i1jgq5 ,
soybn-i1kpj2 ,
soybn-i1kwe7 ,
soybn-i1l7e3 ,
soybn-i1l497 ,
soybn-i1ll09 ,
soybn-i1lpi4 ,
soybn-i1jcw2 ,
soybn-i1jcw3 ,
soybn-i1jcw4 ,
soybn-i1jcw7 ,
soybn-i1k217 ,
soybn-i1kfz3 ,
soybn-i1lhi0 ,
soybn-k7k6s4 ,
soybn-i1jtw1 ,
soybn-c6tas4 ,
soybn-i1m910 ,
soybn-c6t7k8 ,
soybn-i1k636 ,
soybn-i1kju7 ,
soybn-i1j4c6 ,
soybn-i1lbk2 ,
soybn-i1jqy5 ,
soybn-i1nbj8 ,
soybn-i1j855 ,
soybn-i1l5a3 ,
soybn-k7mt28 ,
soybn-i1lau7 ,
soybn-i1lay0 ,
soybn-i1net3 ,
soybn-i1jr09 ,
soybn-i1ms08 ,
soybn-i1mmh5 ,
soybn-i1mly5 ,
soybn-i1mmh3 ,
soybn-i1mmh4 ,
soybn-i1ngu7 ,
soybn-k7ll20 ,
soybn-i1mly4 ,
soybn-a0a0r0i9y7 ,
soybn-a0a0r0j241 ,
soybn-i1les8 ,
soybn-k7n313 ,
soybn-i1kfj1 ,
soybn-a0a0r0k7x4 ,
soybn-i1ly30 ,
soybn-i1mwr8 ,
soybn-i1kfg5 ,
soybn-i1kly2 ,
soybn-a0a0r0ixi2 ,
soybn-i1jew0 ,
glyso-a0a445l5n1 ,
soybn-i1kfz9 ,
soybn-i1jqs1 ,
soybn-i1nbc7 ,
soybn-k7mm57 ,
soybn-a0a0r0fec7 ,
soybn-a0a0r0hcn9 ,
soybn-i1jx17 ,
soybn-k7kvv2 ,
soybn-i1kcl6 ,
soybn-i1kcl7 Abstract
Soybean (Glycine max) is one of the most important crop plants for seed protein and oil content, and for its capacity to fix atmospheric nitrogen through symbioses with soil-borne microorganisms. We sequenced the 1.1-gigabase genome by a whole-genome shotgun approach and integrated it with physical and high-density genetic maps to create a chromosome-scale draft sequence assembly. We predict 46,430 protein-coding genes, 70% more than Arabidopsis and similar to the poplar genome which, like soybean, is an ancient polyploid (palaeopolyploid). About 78% of the predicted genes occur in chromosome ends, which comprise less than one-half of the genome but account for nearly all of the genetic recombination. Genome duplications occurred at approximately 59 and 13 million years ago, resulting in a highly duplicated genome with nearly 75% of the genes present in multiple copies. The two duplication events were followed by gene diversification and loss, and numerous chromosome rearrangements. An accurate soybean genome sequence will facilitate the identification of the genetic basis of many soybean traits, and accelerate the creation of improved soybean varieties.
Other Papers
