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Gene_locus Report for: strhe-ShHTL3

Striga hermonthica (Purple witchweed) (Buchnera hermonthica) KAI2-like protein (Hyposensitive to light 3) ShKAI2iB

Relationship
Family|RsbQ-like
Block| X
Position in NCBI Life Tree|Striga hermonthica
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > lamiids: N E > Lamiales: N E > Orobanchaceae: N E > Buchnereae: N E > Striga: N E > Striga hermonthica: N E


Molecular evidence
Database
No mutation
3 structures: 5DNU, 5DNV, 5DNW
No kinetic





1 substrate:
Karrikin-1
No inhibitor
2 Genbank : ALB07158, KR013123
1 UniProt : A0A0M3PN85
3 Structure : 5DNU, 5DNV, 5DNW
1 UniProt : A0A0M3PN85
1 Interpro : A0A0M3PN85
1 Prodom : A0A0M3PN85
1 Pfam : A0A0M3PN85
1 PIRSF : A0A0M3PN85
1 SUPERFAM : A0A0M3PN85
Sequence
Graphical view for this peptide sequence: strhe-ShHTL3
Colored MSA for RsbQ-like (raw)
GPLGSMNRVEAARNVHIVGSGDTTVVLGHGFGTDQSVWKHLVPYLVDSYR
VLLYDNMGAGSTNPEYFHFERYSTLQGYAHDLLVILHEFNIRSCIFVGHS
LSAMTGAIASIIRPDLFQKIVMLSASPRFLNTADYLGGFEPADVEQLAGA
IEANYKSWVSGFAPMVVGGDMDSVAVQEFSRTLFNMRPDIARSVFRTIFT
SDLRDYLGRVTVPCHIIQSSRDMAVPVSVAGYIHNRVGGRSVVEVMNTEG
HLPQLSAPEVAIPVLLRHIKNDIDS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

GPLGSMNRVEAARNVHIVGSGDTTVVLGHGFGTDQSVWKHLVPYLVDSYR
VLLYDNMGAGSTNPEYFHFERYSTLQGYAHDLLVILHEFNIRSCIFVGHS
LSAMTGAIASIIRPDLFQKIVMLSASPRFLNTADYLGGFEPADVEQLAGA
IEANYKSWVSGFAPMVVGGDMDSVAVQEFSRTLFNMRPDIARSVFRTIFT
SDLRDYLGRVTVPCHIIQSSRDMAVPVSVAGYIHNRVGGRSVVEVMNTEG
HLPQLSAPEVAIPVLLRHIKNDIDS


References
1 more
    Title: Interaction Mechanism of the Germination Stimulants Karrikins and Their Receptor ShKAI2iB
    Zhang JL, Liu X, Zhang HX
    Ref: J Phys Chem B, 124:9812, 2020 : PubMed

            

    Title: Structural basis of unique ligand specificity of KAI2-like protein from parasitic weed Striga hermonthica
    Xu Y, Miyakawa T, Nakamura H, Nakamura A, Imamura Y, Asami T, Tanokura M
    Ref: Sci Rep, 6:31386, 2016 : PubMed

            

    Title: PARASITIC PLANTS. Probing strigolactone receptors in Striga hermonthica with fluorescence
    Tsuchiya Y, Yoshimura M, Sato Y, Kuwata K, Toh S, Holbrook-Smith D, Zhang H, McCourt P, Itami K and Hagihara S <1 more author(s)>
    Ref: Science, 349:864, 2015 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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