takru-nlgn4a

 
Takifugu rubripes (Japanese pufferfish) (Fugu rubripes) Neuroligin 4a

Comment
SINFRUP00000035544 SINFRUG00000035543 SINFRUP00000085460 SINFRUP00000085457 SINFRUG00000083050


Relationship
Family Neuroligin
Block C
Takifugu rubripes position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Actinopterygii: N E > Actinopteri: N E > Neopterygii: N E > Teleostei: N E > Osteoglossocephalai: N E > Clupeocephala: N E > Euteleosteomorpha: N E > Neoteleostei: N E > Eurypterygia: N E > Ctenosquamata: N E > Acanthomorphata: N E > Euacanthomorphacea: N E > Percomorphaceae: N E > Eupercaria: N E > Tetraodontiformes: N E > Tetraodontoidei: N E > Tetradontoidea: N E > Tetraodontidae: N E > Takifugu: N E > Takifugu rubripes: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



1 Genbank : GQ489202
3 UniProt : D2X2H1, H2RY94, H2RY96
3 UniProtTrembl : D2X2H1, H2RY94, H2RY96
3 Interpro : D2X2H1, H2RY94, H2RY96
3 Prodom : D2X2H1, H2RY94, H2RY96
3 Pfam : D2X2H1, H2RY94, H2RY96
3 PIRSF : D2X2H1, H2RY94, H2RY96
3 SUPERFAM : D2X2H1, H2RY94, H2RY96
3 QuickSwissBlast : D2X2H1, H2RY94, H2RY96
 
Sequence
Graphical view for this peptide sequence: takru-nlgn4a
Colored MSA for Neuroligin (raw)
MLAFGGPLWMCGSMAKAKFLFWIGAVSLCAAAVQAQQHPVITTNYGKIRG
VKVTLPNEILGPVEQYLGIPYALAPTGERRFQPPEPPMSWPGIRNATQFP
SVCPQFLEDRFLLNDMLPVWFTANLDTVVTYVQEQSEDCLYLNIYVPTED
GGHTNKAQGADFNNSDGDNIHDENGLKPVMVYIHGGSYMEGTGNMIDGSI
LASYGNVIVITINYRLGVLGFLSTGDQAAKGNYGLLDQIQALRWIKENIQ
AFKGDPKRVTIFGSGAGASCVSLLTLSHYSEDLFQKAIIQSGTALSSWAV
NYQPAKYTRVLAEKVGCNMLDTIDLVECLQNKNYKELIEQYITPAKYHIA
FGPVIDGDVIPDDPQILMEQGEFLNYDIMLGVNQGEGFKFVDGIVDSEDG
VSANDFDFAVSDFVDHLYGYPEGKDTLRETIKFMYTDWADKENPETRRKT
LVALLTDHQWVAPAVATADLHAQYGSPTYFYAFYHHCQSDMKPSWADSAH
GDEVPYVFGIPMIGPTDLFNCNFSKNDVMLSAVVMTYWTNFAKTGDPNQP
VPQDTKFIHTKPNRFEEVAWTKYNPKDQLYLHIGLKPRVRDHYRATKVAF
WLELVPHLHNINEFFQYVSTTTKIPPQDTTPYPYTKRFPGKNNWPSTTRH
PGVPPANTKQSSDQRKTGELTDESTVVIETKRDYSTELSVTIAVGASLLF
LNILAFAALYYKKDKRRHETNRRVPTPQRNSAPTNASSPANDVAHLQSEE
LMSLQMKQQQLDHEHHHECEPLQTHDTMRLTCPPDYTLTLRRSPDDIPLM
TPSTITMIPNTLAGMQPLHNFNTFGGSQNSSNLPHGHSTTRV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MLAFGGPLWMCGSMAKAKFLFWIGAVSLCAAAVQAQQHPVITTNYGKIRG
VKVTLPNEILGPVEQYLGIPYALAPTGERRFQPPEPPMSWPGIRNATQFP
SVCPQFLEDRFLLNDMLPVWFTANLDTVVTYVQEQSEDCLYLNIYVPTED
GGHTNKAQGADFNNSDGDNIHDENGLKPVMVYIHGGSYMEGTGNMIDGSI
LASYGNVIVITINYRLGVLGFLSTGDQAAKGNYGLLDQIQALRWIKENIQ
AFKGDPKRVTIFGSGAGASCVSLLTLSHYSEDLFQKAIIQSGTALSSWAV
NYQPAKYTRVLAEKVGCNMLDTIDLVECLQNKNYKELIEQYITPAKYHIA
FGPVIDGDVIPDDPQILMEQGEFLNYDIMLGVNQGEGFKFVDGIVDSEDG
VSANDFDFAVSDFVDHLYGYPEGKDTLRETIKFMYTDWADKENPETRRKT
LVALLTDHQWVAPAVATADLHAQYGSPTYFYAFYHHCQSDMKPSWADSAH
GDEVPYVFGIPMIGPTDLFNCNFSKNDVMLSAVVMTYWTNFAKTGDPNQP
VPQDTKFIHTKPNRFEEVAWTKYNPKDQLYLHIGLKPRVRDHYRATKVAF
WLELVPHLHNINEFFQYVSTTTKIPPQDTTPYPYTKRFPGKNNWPSTTRH
PGVPPANTKQSSDQRKTGELTDESTVVIETKRDYSTELSVTIAVGASLLF
LNILAFAALYYKKDKRRHETNRRVPTPQRNSAPTNASSPANDVAHLQSEE
LMSLQMKQQQLDHEHHHECEPLQTHDTMRLTCPPDYTLTLRRSPDDIPLM
TPSTITMIPNTLAGMQPLHNFNTFGGSQNSSNLPHGHSTTRV

no DNA




References
    Title: Characterization of the neuroligin gene family expression and evolution in zebrafish
    Rissone A, Sangiorgio L, Monopoli M, Beltrame M, Zucchi I, Bussolino F, Arese M, Cotelli F
    Ref: Developmental Dynamics, 239:688, 2010 : PubMed

            

    Title: The medaka draft genome and insights into vertebrate genome evolution
    Kasahara M, Naruse K, Sasaki S, Nakatani Y, Qu W, Ahsan B, Yamada T, Nagayasu Y, Doi K and Kohara Y <28 more author(s)>
    Ref: Nature, 447:714, 2007 : PubMed

            

    Title: Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
    Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S and Brenner S <31 more author(s)>
    Ref: Science, 297:1301, 2002 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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