Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: trisp-e5s5l6

Trichinella spiralis (Trichina worm); T. nelsoni; T. murrelli; T. sp.; T. pseudospiralis (Parasitic roundworm); T. patagoniensis; T. britovi; T. zimbabwensis; T. nativa; T. papuae Carboxylesterase family protein

Comment
Other strains: Trichinella spiralis (Trichina worm); Trichinella nelsoni; Trichinella murrelli; Trichinella sp. (T9;T6;T8) Trichinella pseudospiralis (Parasitic roundworm); Trichinella patagoniensis; Trichinella britovi; Trichinella zimbabwensis; Trichinella nativa; Trichinella papuae E5T148 probably fragment or pseudo gene


Relationship
Family|OtherNon-catalytic_C
Block| C
Position in NCBI Life Tree|Trichinella spiralis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Protostomia: N E > Ecdysozoa: N E > Nematoda: N E > Enoplea: N E > Dorylaimia: N E > Trichinellida: N E > Trichinellidae: N E > Trichinella: N E > Trichinella spiralis: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 15 more: ABIR02000519, ABIR02002686, JYDL01000100
>3 UniProt links 11 more: E5S5L6, A0A0V0RQN7, A0A0V0U0S8
>3 UniProt links 16 more: E5S5L6, A0A0V0RQN7, A0A0V0U0S8
>3 Interpro links 16 more: E5S5L6, A0A0V0RQN7, A0A0V0U0S8
>3 Pfam links 16 more: E5S5L6, A0A0V0RQN7, A0A0V0U0S8
>3 PIRSF links 16 more: E5S5L6, A0A0V0RQN7, A0A0V0U0S8
>3 SUPERFAM links 16 more: E5S5L6, A0A0V0RQN7, A0A0V0U0S8
Sequence
Graphical view for this peptide sequence: trisp-e5s5l6
Colored MSA for OtherNon-catalytic_C (raw)
MGSKIENSAFFASRERCSLLCLFLIRLSLATTRDNHPIELTISSGSIRGE
FITLDAQYFTVFKGIPYAAPPVGAQRFQPPIQPASWRGVMNATHYGPCCL
QNYEQYKGSRLVELAQIRRSEDCLYLNVFAPPQYYNESLPVIVWIHGGDF
QTGSPADYKQDAILRNFVSRQIVFVSISYRLGPIGFVSSGDDILPGNNGL
WDQIEALRWIQRNIAFFGGDPSRVTVMGQGSGAASASLLALSPYSEGLLH
RAILLSGSALSPGVIRTSAVNATWLLQEHLGCRAFNSSQLLDCIKVRHKN
EIFDITRPRFAWDNYEEWVPVVDGYGHLIPEYPEKMLSKKGARRVPILLG
TTRHESALQFRILKNRPDRNLTLISERRAEALVDNLTMNYYQFNNHRLIT
EGCYHEYIYRPMAPNASKNTLSESIMEMHSDFWYHAPATRLAQLYEQNNV
PVYLYSLDHISDSLFNDDDEWKGVFHGTDLIFLFDLDVDFATHYTYKNWQ
IDRRVTEIFAEMLCNFAREGNPTPDDSDLPKWQRFNSSTLNYMSITDHPS
MKISFHWRGHQFWNVYARSLDGVDVGNLRYIASLAKELESYQMATWVLLS
TTTFFAIILIGLACYCTRKDVDDADM
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MGSKIENSAFFASRERCSLLCLFLIRLSLATTRDNHPIELTISSGSIRGE
FITLDAQYFTVFKGIPYAAPPVGAQRFQPPIQPASWRGVMNATHYGPCCL
QNYEQYKGSRLVELAQIRRSEDCLYLNVFAPPQYYNESLPVIVWIHGGDF
QTGSPADYKQDAILRNFVSRQIVFVSISYRLGPIGFVSSGDDILPGNNGL
WDQIEALRWIQRNIAFFGGDPSRVTVMGQGSGAASASLLALSPYSEGLLH
RAILLSGSALSPGVIRTSAVNATWLLQEHLGCRAFNSSQLLDCIKVRHKN
EIFDITRPRFAWDNYEEWVPVVDGYGHLIPEYPEKMLSKKGARRVPILLG
TTRHESALQFRILKNRPDRNLTLISERRAEALVDNLTMNYYQFNNHRLIT
EGCYHEYIYRPMAPNASKNTLSESIMEMHSDFWYHAPATRLAQLYEQNNV
PVYLYSLDHISDSLFNDDDEWKGVFHGTDLIFLFDLDVDFATHYTYKNWQ
IDRRVTEIFAEMLCNFAREGNPTPDDSDLPKWQRFNSSTLNYMSITDHPS
MKISFHWRGHQFWNVYARSLDGVDVGNLRYIASLAKELESYQMATWVLLS
TTTFFAIILIGLACYCTRKDVDDADM


Reference
    Title: The draft genome of the parasitic nematode Trichinella spiralis
    Mitreva M, Jasmer DP, Zarlenga DS, Wang Z, Abubucker S, Martin J, Taylor CM, Yin Y, Fulton L and Wilson RK <11 more author(s)>
    Ref: Nat Genet, 43:228, 2011 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer