Trichinella spiralis (Trichina worm); T. nelsoni; T. murrelli; T. sp.; T. pseudospiralis (Parasitic roundworm); T. patagoniensis; T. britovi; T. zimbabwensis; T. nativa; T. papuae Carboxylesterase family protein
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) > cellular organisms: NE > Eukaryota: NE > Opisthokonta: NE > Metazoa: NE > Eumetazoa: NE > Bilateria: NE > Protostomia: NE > Ecdysozoa: NE > Nematoda: NE > Enoplea: NE > Dorylaimia: NE > Trichinellida: NE > Trichinellidae: NE > Trichinella: NE > Trichinella spiralis: NE
ACHE : trisp-ACHE1Trichinella spiralis (Trichina worm); T. nelson; T. murrelli; T. sp.; T. patagoniensis; T. britovi; T. pseudospiralis; T zimbabwensis; T. nativa; T papuae Acetylcholinesterase 1, trisp-e5s3s1Trichinella spiralis (Trichina worm); T. nelsoni; T. murrelli; T. sp.; T. patagoniensis; T. britovi; T. zimbabwensis; T pseudospiralis; T nativa; T. papuae, Acetylcholinesterase, trisp-e5sr61Trichinella spiralis (Trichina worm); T. nelsoni; T. murrelli; T. sp. T. pseudospiralis (Parasitic roundworm); T. patagoniensis; T. britovi; T zimbabwensis; T. nativa; T. papuae Acetylcholinesterase ace3. Acidic_Lipase : trisp-e5s2p1Trichinella spiralis (Trichina worm) Gastric triacylglycerol lipase, trisp-e5s7y8Trichinella spiralis (Trichina worm) Lipase, trisp-e5sav1Trichinella spiralis (Trichina worm) Lipase. Carb_B_Nematoda : trisp-e5s254Trichinella spiralis (Trichina worm); T. nelsoni; T. sp. T. pseudospiralis (Parasitic roundworm); T. patagoniensis; T britovi; T. zimbabwensis; T. nativa; T. papuae, Carboxylesterase family protein. DPP4N_Peptidase_S9 : trisp-e5snw0Trichinella spiralis (Trichina worm) Dipeptidyl peptidase 8, trisp-e5ss42Trichinella spiralis (Trichina worm) Inactive dipeptidyl peptidase 10. Gliotactin : trisp-e5s773Trichinella spiralis (Trichina worm) Trichinella pseudospiralis, Putative uncharacterized protein. Ndr_family : trisp-e5sgh2Trichinella spiralis (Trichina worm); T sp.; T. britovi; T. nativa; T. zimbabwensis; T. papuae; T. pseudospiralis; T. murrelli , Ndr family protein. Neuroligin : trisp-e5s9j3Trichinella spiralis (Trichina worm); T. nelsoni; T. sp.; T. patagoniensis; T britovi; T. zimbabwensis; T nativa; Trichinella papuae Putative carboxylesterase UNQ440/PRO873-like protein. PMH_Peptidase_S9 : trisp-e5s8m6Trichinella spiralis (Trichina worm) Peptidase, S9C family. PPase_methylesterase_euk : trisp-e5sbp4Trichinella spiralis (Trichina worm) Protein phosphatase methylesterase 1. Prolylcarboxypeptidase : trisp-e5ryh1Trichinella spiralis (Trichina worm) Serine carboxypeptidase S28 family protein, trisp-e5sgg4Trichinella spiralis (Trichina worm) Putative serine protease pcp-1, trisp-e5sgu8Trichinella spiralis (Trichina worm) Putative serine protease
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Trichinella nelsoni: N, E.
Trichinella murrelli: N, E.
Trichinella sp. T9: N, E.
Trichinella sp. T6: N, E.
Trichinella pseudospiralis: N, E.
Trichinella patagoniensis: N, E.
Trichinella britovi: N, E.
Trichinella zimbabwensis: N, E.
Trichinella nativa: N, E.
Trichinella papuae: N, E.
Trichinella sp. T8: N, E.
LegendThis sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA MGSKIENSAFFASRERCSLLCLFLIRLSLATTRDNHPIELTISSGSIRGE FITLDAQYFTVFKGIPYAAPPVGAQRFQPPIQPASWRGVMNATHYGPCCL QNYEQYKGSRLVELAQIRRSEDCLYLNVFAPPQYYNESLPVIVWIHGGDF QTGSPADYKQDAILRNFVSRQIVFVSISYRLGPIGFVSSGDDILPGNNGL WDQIEALRWIQRNIAFFGGDPSRVTVMGQGSGAASASLLALSPYSEGLLH RAILLSGSALSPGVIRTSAVNATWLLQEHLGCRAFNSSQLLDCIKVRHKN EIFDITRPRFAWDNYEEWVPVVDGYGHLIPEYPEKMLSKKGARRVPILLG TTRHESALQFRILKNRPDRNLTLISERRAEALVDNLTMNYYQFNNHRLIT EGCYHEYIYRPMAPNASKNTLSESIMEMHSDFWYHAPATRLAQLYEQNNV PVYLYSLDHISDSLFNDDDEWKGVFHGTDLIFLFDLDVDFATHYTYKNWQ IDRRVTEIFAEMLCNFAREGNPTPDDSDLPKWQRFNSSTLNYMSITDHPS MKISFHWRGHQFWNVYARSLDGVDVGNLRYIASLAKELESYQMATWVLLS TTTFFAIILIGLACYCTRKDVDDADM
Genome evolution studies for the phylum Nematoda have been limited by focusing on comparisons involving Caenorhabditis elegans. We report a draft genome sequence of Trichinella spiralis, a food-borne zoonotic parasite, which is the most common cause of human trichinellosis. This parasitic nematode is an extant member of a clade that diverged early in the evolution of the phylum, enabling identification of archetypical genes and molecular signatures exclusive to nematodes. We sequenced the 64-Mb nuclear genome, which is estimated to contain 15,808 protein-coding genes, at approximately 35-fold coverage using whole-genome shotgun and hierarchal map-assisted sequencing. Comparative genome analyses support intrachromosomal rearrangements across the phylum, disproportionate numbers of protein family deaths over births in parasitic compared to a non-parasitic nematode and a preponderance of gene-loss and -gain events in nematodes relative to Drosophila melanogaster. This genome sequence and the identified pan-phylum characteristics will contribute to genome evolution studies of Nematoda as well as strategies to combat global parasites of humans, food animals and crops.
