Gene_Locus Report

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Gene_locus Report for: vibpa-PHAC

Vibrio parahaemolyticus, Vibrio harveyi, Vibrio sp., Vibrio alginolyticus, polyhydroxyalkanoic acid synthase

Comment
Other strains: Vibrio parahaemolyticus (AQ4037; AN-5034; K5030; AQ3810; Peru-466; serotype O3:K6 RIMD 2210633), Vibrio harveyi (1DA3; ATCC BAA-1116 / BB120; HY01), Vibrio sp. (AND4; Ex25), Vibrio alginolyticus 40B


Relationship
Family|PHA_synth_I
Block| X
Position in NCBI Life Tree|Vibrio parahaemolyticus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Vibrionales: N E > Vibrionaceae: N E > Vibrio: N E > Vibrio harveyi group: N E > Vibrio parahaemolyticus: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AY046537, AP005088
>3 UniProt links 4 more: Q938U7, Q87GW3, D0X650
>3 UniProt links 4 more: Q938U7, Q87GW3, D0X650
>3 Interpro links 4 more: Q938U7, Q87GW3, D0X650
>3 Pfam links 4 more: Q938U7, Q87GW3, D0X650
>3 PIRSF links 4 more: Q938U7, Q87GW3, D0X650
>3 SUPERFAM links 4 more: Q938U7, Q87GW3, D0X650
Sequence
Graphical view for this peptide sequence: vibpa-PHAC
Colored MSA for PHA_synth_I (raw)
MFQHFFSDYLVKLQETNHQWWHDFEVNKAVVNSPLNKAMQEVNFEDTAKL
FEQAANQPAAILKLQAEWWEQQLQIWQNVALAGNQAQIIEAEKGDKRFSN
EAWQNEAMYSFIKQSYLLFSKTYLDTLDSIEGLDEKTKERITFFSRQAIN
ALSPSNFIATNPELLKLTLEQNGENLLTGLEKLKEDVESSADILKVRMTN
NNAFRVGDDVATTAGDVVFQNELFELIQYRPLTEKVNATPLLIVPPFINK
YYILDLTAKNSMVRWLLEQGHSVFMMSWRNPGKEQAQVEFGDYVTEGVAK
AVTAIEDVTGQEQINAAGYCIGGTVLASTVAYYAAKRMKKRIKSASFFTT
LLDFSQPGEVGAYINDTIISAIETQNNAKGYMDGRSLSVTFSLLRENSLY
WNYYVDNYLKGNSPVDFDLLYWNSDSTNVSAASHNFLLRELYLENKLVQD
KGVKIGGVWIDLNKIKIPSYFVSTKEDHIALWQGTYRGALNTGGNKTFVL
GESGHIAGIVNHPAKNKYGYWLNDNLDDSADEWFNNANHQEGSWWTHWHQ
WLMQFNPEEQVEPFPVGSEQNPAIDEAPGQYVRQVLPIKES
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MFQHFFSDYLVKLQETNHQWWHDFEVNKAVVNSPLNKAMQEVNFEDTAKL
FEQAANQPAAILKLQAEWWEQQLQIWQNVALAGNQAQIIEAEKGDKRFSN
EAWQNEAMYSFIKQSYLLFSKTYLDTLDSIEGLDEKTKERITFFSRQAIN
ALSPSNFIATNPELLKLTLEQNGENLLTGLEKLKEDVESSADILKVRMTN
NNAFRVGDDVATTAGDVVFQNELFELIQYRPLTEKVNATPLLIVPPFINK
YYILDLTAKNSMVRWLLEQGHSVFMMSWRNPGKEQAQVEFGDYVTEGVAK
AVTAIEDVTGQEQINAAGYCIGGTVLASTVAYYAAKRMKKRIKSASFFTT
LLDFSQPGEVGAYINDTIISAIETQNNAKGYMDGRSLSVTFSLLRENSLY
WNYYVDNYLKGNSPVDFDLLYWNSDSTNVSAASHNFLLRELYLENKLVQD
KGVKIGGVWIDLNKIKIPSYFVSTKEDHIALWQGTYRGALNTGGNKTFVL
GESGHIAGIVNHPAKNKYGYWLNDNLDDSADEWFNNANHQEGSWWTHWHQ
WLMQFNPEEQVEPFPVGSEQNPAIDEAPGQYVRQVLPIKES


References
1 more
    Title: Genomic taxonomy of Vibrios
    Thompson CC, Vicente AC, Souza RC, Vasconcelos AT, Vesth T, Alves N, Jr., Ussery DW, Iida T, Thompson FL
    Ref: BMC Evol Biol, 9:258, 2009 : PubMed

            

    Title: Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae
    Makino K, Oshima K, Kurokawa K, Yokoyama K, Uda T, Tagomori K, Iijima Y, Najima M, Nakano M and Iida T <7 more author(s)>
    Ref: Lancet, 361:743, 2003 : PubMed

            

    Title: Cloning, molecular analysis, and expression of the polyhydroxyalkanoic acid synthase (phaC) gene from Chromobacterium violaceum
    Kolibachuk D, Miller A, Dennis D
    Ref: Applied Environmental Microbiology, 65:3561, 1999 : PubMed

            


Other Papers


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Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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