Gene_Locus Report

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Gene_locus Report for: vitvi-f6hqf1

Vitis vinifera (Grape) Putative uncharacterized protein

Comment
A5B596 only c-term in family


Relationship
Family|Hydroxynitrile_lyase
Block| X
Position in NCBI Life Tree|Vitis vinifera
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > rosids incertae sedis: N E > Vitales: N E > Vitaceae: N E > Vitis: N E > Vitis vinifera: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : FN596006, AM447067
2 UniProt : F6HQF1, A5B596
2 UniProt : F6HQF1, A5B596
2 Interpro : F6HQF1, A5B596
2 Pfam : F6HQF1, A5B596
2 PIRSF : F6HQF1, A5B596
2 SUPERFAM : F6HQF1, A5B596
Sequence
Graphical view for this peptide sequence: vitvi-f6hqf1
Colored MSA for Hydroxynitrile_lyase (raw)
MASEGRQANPVKHFVLVHGSCHGAWSWYKIVALLKSSGHKVTALDLAASG
INTKQVGDLRLISEYFQPLRDFMESLPADERVVLVGHSSGGLAISQAMEK
FPEKVSVAVFVTASMPGPTLNISTLNQETSRRQGPLLDSQFTYDNGPNNP
PTTFTFGPLFLSLNLYQLSPTEDLALGTMLMRPVRLFSEEDTSNELMLWK
KYASVKRVFIISEEDKVMKKDFQLWMIQKNPPDAVKEIKGSDHMVMMSKP
KELWVHLQAIAEKYS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MASEGRQANPVKHFVLVHGSCHGAWSWYKIVALLKSSGHKVTALDLAASG
INTKQVGDLRLISEYFQPLRDFMESLPADERVVLVGHSSGGLAISQAMEK
FPEKVSVAVFVTASMPGPTLNISTLNQETSRRQGPLLDSQFTYDNGPNNP
PTTFTFGPLFLSLNLYQLSPTEDLALGTMLMRPVRLFSEEDTSNELMLWK
KYASVKRVFIISEEDKVMKKDFQLWMIQKNPPDAVKEIKGSDHMVMMSKP
KELWVHLQAIAEKYS


References
    Title: The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N and Wincker P <46 more author(s)>
    Ref: Nature, 449:463, 2007 : PubMed

            

    Title: A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
    Velasco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, Pruss D, Pindo M, FitzGerald LM, Vezzulli S and Viola R <47 more author(s)>
    Ref: PLoS ONE, 2:e1326, 2007 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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