Gene_locus Report for: vitvi-f6hqf4 Vitis vinifera (Grape) Putative uncharacterized protein
Comment
only c-term Pfam A Abhydrolase_6 339 580 Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > rosids incertae sedis: N E > Vitales: N E > Vitaceae: N E > Vitis: N E > Vitis vinifera: N E 6_AlphaBeta_hydrolase :
vitvi-a5ayn8 Vitis vinifera (Grape) AB hydrolase-1 domain-containing protein .
ABHD13-BEM46 :
vitvi-d7tci5 Vitis vinifera (Grape). protein bem46-like .
ABHD18 :
vitvi-a5blq0 Vitis vinifera (Grape) Putative uncharacterized protein .
abh_upf0017 :
vitvi-d7tvr0 Vitis vinifera (Grape) Putative uncharacterized protein .
Acidic_Lipase :
vitvi-a5b6n6 Vitis vinifera (Grape) Lipase ,
vitvi-d7tef1 Vitis vinifera (Grape) Lipase ,
vitvi-d7ubd6 Vitis vinifera (Grape) Lipase .
BD-FAE :
vitvi-a5bxd7 Vitis vinifera (Grape) putative uncharacterized protein .
Bodyguard :
vitvi-d7tvr6 Vitis vinifera (Grape) Uncharacterized protein .
Carboxypeptidase_S10 :
vitvi-a5b5p5 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-a5b7e5 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-a5bkl0 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-a5c8m8 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-d7sqb8 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-d7tmb8 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-f6hqe0 Vitis vinifera (Grape) Putative uncharacterized protein .
Chlorophyllase_Plant :
vitvi-a5b3m9 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-d7t734 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-f6hi76 Vitis vinifera Putative uncharacterized protein .
DPP4N_Peptidase_S9 :
vitvi-a5c1g2 Vitis vinifera (Grape) Putative uncharacterized protein .
Duf_726 :
vitvi-a5bft8 Vitis vinifera (Grape) Putative uncharacterized protein .
Duf_829 :
vitvi-a7ntu2 Vitis vinifera (Grape) Chromosome chr18 scaffold_1, whole genome shotgun sequence ,
vitvi-a7pus9 Vitis vinifera (Grape) Chromosome chr4 scaffold_32, whole genome shotgun sequence ,
vitvi-a7qpz3 Vitis vinifera (Grape) Chromosome undetermined scaffold_139, whole genome shotgun sequence ,
vitvi-d7tpk8 Vitis vinifera (Grape) Chromosome chr3 scaffold_8, whole genome shotgun sequence .
Duf_1350 :
vitvi-d7tfn3 Vitis vinifera (Grape), Putative uncharacterized protein ,
vitvi-f6h2u7 Vitis vinifera (Grape), Putative uncharacterized protein .
Epoxide_hydrolase :
vitvi-a5b8q6 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-a5c6e7 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-a7q3d1 Vitis vinifera (Grape) AB hydrolase-1 domain-containing protein .
Glutamyl_Peptidase_S9 :
vitvi-d7u2i4 Vitis vinifera (Grape). Peptidase_S9 domain-containing protein .
Hydroxynitrile_lyase :
vitvi-a5ane2 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-a5bji4 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-d7ssd7 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-d7ssd8 Vitis vinifera (Grape) methyl jasmonate esterase VvMJE1 ,
vitvi-d7ssd9 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-d7u935 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-f6gyw1 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-f6gyw2 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-f6gyw4 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-f6hqf1 Vitis vinifera (Grape) Putative uncharacterized protein .
Maspardin-ACP33-SPG21_like :
vitvi-d7sx57 Vitis vinifera (Grape) Putative uncharacterized protein .
MenH_SHCHC :
vitvi-a7pnb4 Vitis vinifera (Grape) AlphaBeta_hydrolase concatened to MR_MLE domain-containing protein .
Monoglyceridelipase_lysophospholip :
vitvi-a5bm71 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-d7t940 Vitis vinifera (Grape) Putative uncharacterized protein .
Ndr_family :
vitvi-d7tum4 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-d7tba3 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-d7stm8 Vitis vinifera (Grape) Putative uncharacterized protein .
NLS3-Tex30 :
vitvi-d7tve2 Vitis vinifera (Grape) Putative uncharacterized protein .
Pectinacetylesterase-Notum :
vitvi-a5c8p7 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-f6hzf1.1 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-f6hzf1.2 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-f6he55 Vitis vinifera (Grape). Putative uncharacterized protein ,
vitvi-d7thp4 Vitis vinifera (Grape). Putative uncharacterized protein ,
vitvi-d7tfe6 Vitis vinifera (Grape). Putative uncharacterized protein ,
vitvi-e0cv10 Vitis vinifera (Grape). Putative uncharacterized protein .
Pheophytinase :
vitvi-f6hhx5 Vitis vinifera (Grape) Putative uncharacterized protein .
Plant_carboxylesterase :
vitvi-VvTA Vitis vinifera (Grape) Tannase VvTA ,
vitvi-BIG8.1 Vitis vinifera (Grape) putative serine hydrolase ,
vitvi-f6hva3 Vitis vinifera (Grape). Uncharacterized protein ,
vitvi-d7tqu0 Vitis vinifera (Grape). Uncharacterized protein ,
vitvi-f6hqq0 Vitis vinifera (Grape). Uncharacterized protein ,
vitvi-a5bej5 Vitis vinifera (Grape). Uncharacterized protein ,
vitvi-d7sut7 Vitis vinifera (Grape). Abhydrolase_3 domain-containing protein ,
vitvi-d7sut6 Vitis vinifera (Grape). Abhydrolase_3 domain-containing protein ,
vitvi-f6h317 Vitis vinifera (Grape). Abhydrolase_3 domain-containing protein ,
vitvi-f6h318 Vitis vinifera (Grape). Abhydrolase_3 domain-containing protein ,
vitvi-f6hsf1 Vitis vinifera (Grape). Abhydrolase_3 domain-containing protein ,
vitvi-f6hqd1 Vitis vinifera (Grape). Abhydrolase_3 domain-containing protein ,
vitvi-f6hqd0 Vitis vinifera (Grape). Abhydrolase_3 domain-containing protein ,
vitvi-f6hfp6 Vitis vinifera (Grape). Abhydrolase_3 domain-containing protein .
Plant_lipase_EDS1-like :
vitvi-f6gsx7 ,
vitvi-d7si01 Vitis vinifera (Grape). Uncharacterized protein ,
vitvi-d7si06 Vitis vinifera (Grape). Uncharacterized protein .
PPase_methylesterase_euk :
vitvi-d7tle9 Vitis vinifera (Grape) Protein phosphatase methylesterase 1 .
Proline_iminopeptidase :
vitvi-a5bej7 Vitis vinifera (Grape). Proline iminopeptidase ,
vitvi-d7t3j3 Vitis vinifera (Grape). Proline iminopeptidase ,
vitvi-d7uce5 Vitis vinifera (Grape). Putative uncharacterized protein .
Prolylcarboxypeptidase :
vitvi-a5b6r9 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-a5b8k1 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-a5b8l9 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-a5c9w6 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-d7ssp2 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-d7tg96 Vitis vinifera (Grape) Putative uncharacterized protein .
RsbQ-like :
vitvi-a5ajc4 Vitis vinifera (Grape) Putative uncharacterized protein ,
vitvi-a5b7c0 Vitis vinifera (Grape) KAI2 GSVIVT01000162001 ,
vitvi-a5bub9 Vitis vinifera (Grape) Putative uncharacterized protein .
S9N_PREPL_Peptidase_S9 :
vitvi-a5ama3 Vitis vinifera (Grape) Putative uncharacterized protein .
UCP031088 :
vitvi-f6gtp7 Vitis vinifera (Grape). Uncharacterized protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: vitvi-f6hqf4 Colored MSA for Hydroxynitrile_lyase (raw)
HFVLVHGSCHGAWSWYKIVALLKSSGHKVTALDLAASGINPKQVGDLRSI
SWYFQPLRDFVESLPADERVVLVGHSLGGLAISQAMEKFPEKVSVAVFVT
ASMPGPTLNISTLNQESLRRQGPLLDSQFTYDNGPNNPPTTFSFGPLFLS
LNVYQLSPTEDLALGTVLMRPVRLFIEEDMSNELMLSKKYASVKRVFIIS
EEDKLGKRDFQLWMIEKNPPDAVKEIKGSDHMVMISKPKELWVHLQAIAE
KYS
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
H F V L V H G S C H G A W S W Y K I V A L L K S S G H K V T A L D L A A S G I N P K Q V G D L R S I S W Y F Q P L R D F V E S L P A D E R V V L V G H S L G G L A I S Q A M E K F P E K V S V A V F V T A S M P G P T L N I S T L N Q E S L R R Q G P L L D S Q F T Y D N G P N N P P T T F S F G P L F L S L N V Y Q L S P T E D L A L G T V L M R P V R L F I E E D M S N E L M L S K K Y A S V K R V F I I S E E D K L G K R D F Q L W M I E K N P P D A V K E I K G S D H M V M I S K P K E L W V H L Q A I A E K Y S
Reference
Title: The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phylaJaillon O , Aury JM , Noel B , Policriti A , Clepet C , Casagrande A , Choisne N , Aubourg S , Vitulo N and Wincker P <46 more author(s)> Jaillon O , Aury JM , Noel B , Policriti A , Clepet C , Casagrande A , Choisne N , Aubourg S , Vitulo N , Jubin C , Vezzi A , Legeai F , Hugueney P , Dasilva C , Horner D , Mica E , Jublot D , Poulain J , Bruyere C , Billault A , Segurens B , Gouyvenoux M , Ugarte E , Cattonaro F , Anthouard V , Vico V , Del Fabbro C , Alaux M , Di Gaspero G , Dumas V , Felice N , Paillard S , Juman I , Moroldo M , Scalabrin S , Canaguier A , Le Clainche I , Malacrida G , Durand E , Pesole G , Laucou V , Chatelet P , Merdinoglu D , Delledonne M , Pezzotti M , Lecharny A , Scarpelli C , Artiguenave F , Pe ME , Valle G , Morgante M , Caboche M , Adam-Blondon AF , Weissenbach J , Quetier F , Wincker P (- 46) Ref: Nature, 449 :463, 2007 : PubMed Abstract ESTHER: Jaillon_2007_Nature_449_463 PubMedSearch: Jaillon 2007 Nature 449 463 PubMedID: 17721507 Gene_locus related to this paper: vitvi-a5b6n6 ,
vitvi-a5b7c0 ,
vitvi-a5b8l9 ,
vitvi-a5bji4 ,
vitvi-a5bxd7 ,
vitvi-a5c1g2 ,
vitvi-a5c8p7 ,
vitvi-a7ntu2 ,
vitvi-a7pnb4 ,
vitvi-a7pus9 ,
vitvi-a7q3d1 ,
vitvi-a7qpz3 ,
vitvi-BIG8.1 ,
vitvi-d7sqb8 ,
vitvi-d7ssp2 ,
vitvi-d7sx57 ,
vitvi-d7t734 ,
vitvi-d7t940 ,
vitvi-d7tef1 ,
vitvi-d7tg96 ,
vitvi-d7tle9 ,
vitvi-d7tmb8 ,
vitvi-d7tpk8 ,
vitvi-d7tve2 ,
vitvi-d7tvr0 ,
vitvi-d7ubd6 ,
vitvi-f6hhx5 ,
vitvi-f6hi76 ,
vitvi-f6hqe0 ,
vitvi-f6hzf1.1 ,
vitvi-f6hzf1.2 ,
vitvi-d7ssd7 ,
vitvi-d7ssd8 ,
vitvi-d7ssd9 ,
vitvi-d7u935 ,
vitvi-f6gyw1 ,
vitvi-f6gyw2 ,
vitvi-f6gyw4 ,
vitvi-f6hqf1 ,
vitvi-f6hqf4 ,
vitvi-d7tum4 ,
vitvi-d7tba3 ,
vitvi-d7stm8 ,
vitvi-d7t3j3 ,
vitvi-d7uce5 ,
vitvi-f6he55 ,
vitvi-d7thp4 ,
vitvi-d7tfe6 ,
vitvi-e0cv10 ,
vitvi-f6gtp7 ,
vitvi-f6hva3 ,
vitvi-d7tqu0 ,
vitvi-f6hqq0 ,
vitvi-d7tci5 ,
vitvi-d7sut7 ,
vitvi-d7sut6 ,
vitvi-f6h317 ,
vitvi-f6h318 ,
vitvi-f6hsf1 ,
vitvi-f6hqd1 ,
vitvi-f6hqd0 ,
vitvi-f6hfp6 ,
vitvi-d7u2i4 ,
vitvi-f6gsx7 ,
vitvi-d7si01 ,
vitvi-d7si06 Abstract
The analysis of the first plant genomes provided unexpected evidence for genome duplication events in species that had previously been considered as true diploids on the basis of their genetics. These polyploidization events may have had important consequences in plant evolution, in particular for species radiation and adaptation and for the modulation of functional capacities. Here we report a high-quality draft of the genome sequence of grapevine (Vitis vinifera) obtained from a highly homozygous genotype. The draft sequence of the grapevine genome is the fourth one produced so far for flowering plants, the second for a woody species and the first for a fruit crop (cultivated for both fruit and beverage). Grapevine was selected because of its important place in the cultural heritage of humanity beginning during the Neolithic period. Several large expansions of gene families with roles in aromatic features are observed. The grapevine genome has not undergone recent genome duplication, thus enabling the discovery of ancestral traits and features of the genetic organization of flowering plants. This analysis reveals the contribution of three ancestral genomes to the grapevine haploid content. This ancestral arrangement is common to many dicotyledonous plants but is absent from the genome of rice, which is a monocotyledon. Furthermore, we explain the chronology of previously described whole-genome duplication events in the evolution of flowering plants.
Other Papers
Vitis vinifera (Grape).Enhanced disease susceptibility 1 EDS1 VvEDS1Nterm