Gene_locus Report for: xanc5-q3bup9 Xanthomonas campestris pv. vesicatoria (strain 85-10) Putative uncharacterized protein
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Xanthomonadales: N E > Xanthomonadaceae: N E > Xanthomonas: N E > Xanthomonas campestris: N E 5_AlphaBeta_hydrolase :
xanca-XCC2811 Xanthomonas campestris (pv. campestris) ( and strain 8004) hypothetical protein xcc2811 .
6_AlphaBeta_hydrolase :
xanca-W78 Xanthomonas campestris (pv. campestris)( and strain 8004) nodulation related protein ,
xanca-XCC0372 Xanthomonas campestris (pv. campestris) (and strain 8004) hydrolase ,
xanca-XCC0800 Xanthomonas campestris (pv. campestris) ( and strain 8004) hydrolase ,
xanca-XCC0843 Xanthomonas campestris (pv. campestris) (and strains 8004; B100) hydrolase ,
xanca-XCC2869 Xanthomonas campestris (pv. campestris) (and strain 8004) hypothetical protein xcc2869 ,
xanca-XCC3028 Xanthomonas campestris (pv. campestris) (and strains 8004; B100) hypothetical protein xcc3028 ,
xanca-XCC3915 Xanthomonas campestris (pv. campestris) (strain 8004) hypothetical protein xcc3915 ,
xanca-XCC4096 Xanthomonas campestris (pv. campestris) hydrolase .
A85-Feruloyl-Esterase :
xanca-XCC4180 Xanthomonas campestris (pv. campestris) (strains 8004; B100) hypothetical protein xcc4180 .
A85-IroE-IroD-Fes-Yiel :
xanca-XCC3555 Xanthomonas campestris (pv. campestris) (strains 8004; B100) Xanthomonas campestris pv. vesicatoria (strain 85-10) hypothetical protein xcc3555 .
abh_upf0017 :
xanca-XCC0180 Xanthomonas campestris (pv. campestris) (and strains 8004; B100) hypothetical protein xcc0180 .
AlphaBeta_hydrolase :
xanca-XCC1541 ,
xanca-XCC2854 Xanthomonas campestris (pv. campestris) ( and strain 8004) hydrolase .
Atu1826-like :
xanca-XC6422 ,
xanca-XCC0260 Xanthomonas campestris (pv. campestris) hypothetical protein xcc0260 .
BD-FAE :
xanca-XCC2285 Xanthomonas campestris pv. campestris str. ATCC 33913 and (strain 8004) (and pv. vesicatoria (strain 85-10))(and pv. campestris (strain B100)), XCC2285 gene ,
xanca-XYNB Xanthomonas campestris (pv. campestris) ( and strain 8004) xylanase .
BioH :
xanca-BIOH Xanthomonas campestris (pv. campestris) (and strain 8004 strain B100) biotin biosynthesis protein .
Carboxymethylbutenolide_lactonase :
xanca-CATD Xanthomonas campestris (pv. campestris) b-ketoadipate enol-lactone hydrolase .
Carb_B_Bacteria :
xanca-estA1 Xanthomonas campestris estA1 ,
xanca-XCC3164 Xanthomonas campestris pv. campestris str. ATCC 33913(and pv. vesicatoria (strain 85-10)) (and strain B100)pv. raphani 756C , XCC3164 gene ,
xanca-a0a0e3ufx1 Xanthomonas campestris. Carboxylic ester hydrolase ,
xanca-a0a0l7gp40 Xanthomonas campestris. Carboxylic ester hydrolase .
Dienelactone_hydrolase :
xanca-XCC2566 Xanthomonas campestris, Xanthomonas oryzae, Xanthomonas fuscans, Xanthomonas perforans, Xanthomonas gardneri, Xanthomonas vesicatoria, Xanthomonas axonopodis, carboxymethylenebutenolidase ,
xanca-XCC2737 Xanthomonas campestris (pv. campestris) ( and strain 8004) hypothetical protein xcc2737 .
DPP4N_Peptidase_S9 :
xanca-XCC2397 Xanthomonas campestris (pv. campestris) peptidase ,
xanca-XCC2405 Xanthomonas campestris (pv. campestris) peptidase ,
xanca-XCC3548 Xanthomonas campestris (pv. campestris) dipeptidyl peptidase IV ,
xanca-XCC3961 Xanthomonas campestris (pv. campestris), X. vesicatoria, X. gardneri, dipeptidyl peptidase IV ,
xanca-XCC4016 Xanthomonas campestris (pv. campestris) dipeptidyl-peptidase .
Epoxide_hydrolase :
xanca-PCAD Xanthomonas campestris (pv. campestris) (and strain 8004) beta-ketoadipate enol-lactone hydrolase .
Fungal-Bact_LIP :
xanca-XCC2374 Xanthomonas campestris (pv. campestris) (and strains 8004; B100) hypothetical protein xcc2374 ,
xanca-XCC2957 Xanthomonas campestris (pv. campestris) hypothetical protein xcc2957 .
Glutamyl_Peptidase_S9 :
xanca-XCC0753 Xanthomonas campestris (pv. campestris)(and strain 8004) hypothetical protein xcc0753 .
GTSAGmotif :
xanca-XCC0080 Xanthomonas campestris (pv. campestris) esterase .
Haloperoxidase :
xanca-CPO Xanthomonas campestris (pv. campestris) ( and strains 8004; B100) non-heme chloroperoxidase .
Homoserine_transacetylase :
xanca-META Xanthomonas campestris (pv. campestris) (and strain 8004) homoserine o-acetyltransferase ,
xanca-METX Xanthomonas campestris (pv. campestris) (and strains 8004; B100)homoserine o-acetyltransferase .
Hormone-sensitive_lipase_like :
xanca-XCC0266 Xanthomonas campestris, Xanthomonas vesicatoria, lipase ,
xanca-XCC0375 Xanthomonas campestris (pv. campestris) (and strain 8004) lipase ,
xanca-XYNB2 Xanthomonas campestris (pv. campestris) xylanase .
Lipase_3 :
xanca-XCC3296 Xanthomonas campestris (pv. campestris), Xanthomonas gardneri, hypothetical protein xcc3296 ,
xanca-XCC3300 Xanthomonas campestris (pv. campestris) hypothetical protein xcc3300 ,
xanca-XCC3308 Xanthomonas campestris (pv. campestris) hypothetical protein xcc3308 ,
xanca-XCC3623 Xanthomonas campestris (pv. campestris) (and strain 8004) hypothetical protein xcc3623 .
LYsophospholipase_carboxylesterase :
xanca-XCC3514 Xanthomonas campestris (pv. campestris) carboxylesterase .
Mbeg1-like :
xanca-XCC2722 Xanthomonas campestris, Xanthomonas axonopodis, Xanthomonas perforans, Xanthomonas fuscans, phospholipase a1 .
PGAP1 :
xanca-XCC0757 Xanthomonas campestris (pv. campestris) hypothetical protein xcc0757 .
PHA_synth_III_C :
xanca-PHBC Xanthomonas campestris (pv. campestris)( and strain 8004) poly (3-hydroxybutyric acid) synthase .
PHB_depolymerase_PhaZ :
xancp-q8pax3 Xanthomonas campestris (pv. campestris) phb depolymerase .
Proline_iminopeptidase :
xanca-impep ,
xanca-XCC2817 Xanthomonas campestris (pv. campestris) (and strains 8004; B100) proline imino-peptidase ,
xanca-XCC3219 Xanthomonas campestris proline imino-peptidase ,
xanca-XCC3970 Xanthomonas campestris cysteine proteinase .
Prolyl_oligopeptidase_S9 :
xanca-XCC0243 Xanthomonas campestris (pv. campestris) ( and strain 8004) dipeptidyl aminopeptidase ,
xanca-XCC1105 Xanthomonas campestris, Xanthomonas axonopodis, Xanthomonas oryzae, X. perforans, X. vesicatoria, X. fuscans, X. gardneri alanyl dipeptidyl peptidase ,
xanca-XCC3320 Xanthomonas campestris (pv. campestris) ( and strain 8004) prolyl oligopeptidase family protein ,
xanca-XCC3885 .
UCP037442 :
xanca-XCC1734 Xanthomonas campestris (pv. campestris) (and strains B100; 8004) hypothetical protein xcc1734 .
VirJ :
xanca-acvB Xanthomonas campestris (pv. campestris; pv. raphani) virulence protein ,
xanca-Q8PB04 Xanthomonas campestris (pv. campestris; pv. raphani) virulence protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: xanc5-q3bup9 Colored MSA for UCP037442 (raw)
MSVQTNTLLASAADGHRWQVIRCAPTQPAATLLWLPALGVAARHYQPFAQ
ALASTGVAVYLHEWRGNGSSTLRPSREHDWGYRTLLADDLPASHALLDIH
DPQLPRMVGGHSLGGQLACCYAALHPVQFAQLWLVASGSPYWRNFPVPMR
YGLPLAFRLLPWLARRQGVLHGRKLGFGGTEARSLIADWAQVGRSNRYRA
AGAPWDLERALGQLRVPIRAVTLARDTLGPAGALRALLDKMPQAHPRHVR
LDDGHLGARSDHFAWMKTPAAVVAALRDAPDHDLDGAGISQRD
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M S V Q T N T L L A S A A D G H R W Q V I R C A P T Q P A A T L L W L P A L G V A A R H Y Q P F A Q A L A S T G V A V Y L H E W R G N G S S T L R P S R E H D W G Y R T L L A D D L P A S H A L L D I H D P Q L P R M V G G H S L G G Q L A C C Y A A L H P V Q F A Q L W L V A S G S P Y W R N F P V P M R Y G L P L A F R L L P W L A R R Q G V L H G R K L G F G G T E A R S L I A D W A Q V G R S N R Y R A A G A P W D L E R A L G Q L R V P I R A V T L A R D T L G P A G A L R A L L D K M P Q A H P R H V R L D D G H L G A R S D H F A W M K T P A A V V A A L R D A P D H D L D G A G I S Q R D
Reference
Title: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequenceThieme F , Koebnik R , Bekel T , Berger C , Boch J , Buttner D , Caldana C , Gaigalat L , Goesmann A and Kaiser O <19 more author(s)> Thieme F , Koebnik R , Bekel T , Berger C , Boch J , Buttner D , Caldana C , Gaigalat L , Goesmann A , Kay S , Kirchner O , Lanz C , Linke B , McHardy AC , Meyer F , Mittenhuber G , Nies DH , Niesbach-Klosgen U , Patschkowski T , Ruckert C , Rupp O , Schneiker S , Schuster SC , Vorholter FJ , Weber E , Puhler A , Bonas U , Bartels D , Kaiser O (- 19) Ref: Journal of Bacteriology, 187 :7254, 2005 : PubMed Abstract ESTHER: Thieme_2005_J.Bacteriol_187_7254 PubMedSearch: Thieme 2005 J.Bacteriol 187 7254 PubMedID: 16237009 Gene_locus related to this paper: xanac-q8pmm6 ,
xanax-ACVB ,
xanax-BIOH ,
xanax-CATD ,
xanax-CPO ,
xanax-DHAA ,
xanax-ENTF2 ,
xanax-GAA ,
xanax-META ,
xanax-METX ,
xanax-PCAD ,
xanax-PHBC ,
xanax-PTRB ,
xanax-Q8PMQ8 ,
xanax-XAC0198 ,
xanax-XAC0262 ,
xanax-XAC0319 ,
xanax-XAC0372 ,
xanax-XAC0375 ,
xanax-XAC0515 ,
xanax-XAC0574 ,
xanax-XAC0591 ,
xanax-XAC0619 ,
xanax-XAC0628 ,
xanax-XAC0736 ,
xanax-XAC0753 ,
xanax-XAC0805 ,
xanax-XAC0874 ,
xanax-XAC1200 ,
xanax-XAC1213 ,
xanax-XAC1713 ,
xanax-XAC2532 ,
xanax-XAC2541 ,
xanax-XAC2907 ,
xanax-XAC2981 ,
xanax-XAC2990 ,
xanax-XAC3037 ,
xanax-XAC3053 ,
xanax-XAC3152 ,
xanax-XAC3770 ,
xanax-XAC3999 ,
xanax-XAC4046 ,
xanax-XAC4055 ,
xanax-XAC4106 ,
xanax-XAC4221 ,
xanax-XAC4316 ,
xanax-XYNB ,
xanc5-q3bqi2 ,
xanc5-q3bst4 ,
xanc5-q3btn4 ,
xanc5-q3bup9 ,
xanc5-q3byx0 ,
xanca-estA1 ,
xanca-impep ,
xanca-XCC1105 ,
xanca-XCC2285 ,
xanca-XCC2566 ,
xanca-XCC2722 ,
xanca-XCC3164 ,
xanca-XCC3555 ,
xanor-q5h3e8 Abstract
The gram-negative plant-pathogenic bacterium Xanthomonas campestris pv. vesicatoria is the causative agent of bacterial spot disease in pepper and tomato plants, which leads to economically important yield losses. This pathosystem has become a well-established model for studying bacterial infection strategies. Here, we present the whole-genome sequence of the pepper-pathogenic Xanthomonas campestris pv. vesicatoria strain 85-10, which comprises a 5.17-Mb circular chromosome and four plasmids. The genome has a high G+C content (64.75%) and signatures of extensive genome plasticity. Whole-genome comparisons revealed a gene order similar to both Xanthomonas axonopodis pv. citri and Xanthomonas campestris pv. campestris and a structure completely different from Xanthomonas oryzae pv. oryzae. A total of 548 coding sequences (12.2%) are unique to X. campestris pv. vesicatoria. In addition to a type III secretion system, which is essential for pathogenicity, the genome of strain 85-10 encodes all other types of protein secretion systems described so far in gram-negative bacteria. Remarkably, one of the putative type IV secretion systems encoded on the largest plasmid is similar to the Icm/Dot systems of the human pathogens Legionella pneumophila and Coxiella burnetii. Comparisons with other completely sequenced plant pathogens predicted six novel type III effector proteins and several other virulence factors, including adhesins, cell wall-degrading enzymes, and extracellular polysaccharides.
Other Papers
Xanthomonas campestris (pv. campestris) hypothetical protein xcc1541