Gene_locus Report for: xanca-XCC0260 Xanthomonas campestris (pv. campestris) hypothetical protein xcc0260
Comment
Other strains: Xanthomonas campestris (pv. campestris; pv. raphani 756C; 8004) Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Xanthomonadales: N E > Xanthomonadaceae: N E > Xanthomonas: N E > Xanthomonas campestris: N E 5_AlphaBeta_hydrolase :
xanca-XCC2811 Xanthomonas campestris (pv. campestris) ( and strain 8004) hypothetical protein xcc2811 .
6_AlphaBeta_hydrolase :
xanca-W78 Xanthomonas campestris (pv. campestris)( and strain 8004) nodulation related protein ,
xanca-XCC0372 Xanthomonas campestris (pv. campestris) (and strain 8004) hydrolase ,
xanca-XCC0800 Xanthomonas campestris (pv. campestris) ( and strain 8004) hydrolase ,
xanca-XCC0843 Xanthomonas campestris (pv. campestris) (and strains 8004; B100) hydrolase ,
xanca-XCC2869 Xanthomonas campestris (pv. campestris) (and strain 8004) hypothetical protein xcc2869 ,
xanca-XCC3028 Xanthomonas campestris (pv. campestris) (and strains 8004; B100) hypothetical protein xcc3028 ,
xanca-XCC3915 Xanthomonas campestris (pv. campestris) (strain 8004) hypothetical protein xcc3915 ,
xanca-XCC4096 Xanthomonas campestris (pv. campestris) hydrolase .
A85-Feruloyl-Esterase :
xanca-XCC4180 Xanthomonas campestris (pv. campestris) (strains 8004; B100) hypothetical protein xcc4180 .
A85-IroE-IroD-Fes-Yiel :
xanca-XCC3555 Xanthomonas campestris (pv. campestris) (strains 8004; B100) Xanthomonas campestris pv. vesicatoria (strain 85-10) hypothetical protein xcc3555 .
abh_upf0017 :
xanca-XCC0180 Xanthomonas campestris (pv. campestris) (and strains 8004; B100) hypothetical protein xcc0180 .
AlphaBeta_hydrolase :
xanca-XCC1541 ,
xanca-XCC2854 Xanthomonas campestris (pv. campestris) ( and strain 8004) hydrolase .
Atu1826-like :
xanca-XC6422 .
BD-FAE :
xanca-XCC2285 Xanthomonas campestris pv. campestris str. ATCC 33913 and (strain 8004) (and pv. vesicatoria (strain 85-10))(and pv. campestris (strain B100)), XCC2285 gene ,
xanca-XYNB Xanthomonas campestris (pv. campestris) ( and strain 8004) xylanase .
BioH :
xanca-BIOH Xanthomonas campestris (pv. campestris) (and strain 8004 strain B100) biotin biosynthesis protein .
Carboxymethylbutenolide_lactonase :
xanca-CATD Xanthomonas campestris (pv. campestris) b-ketoadipate enol-lactone hydrolase .
Carb_B_Bacteria :
xanca-estA1 Xanthomonas campestris estA1 ,
xanca-XCC3164 Xanthomonas campestris pv. campestris str. ATCC 33913(and pv. vesicatoria (strain 85-10)) (and strain B100)pv. raphani 756C , XCC3164 gene ,
xanca-a0a0e3ufx1 Xanthomonas campestris. Carboxylic ester hydrolase ,
xanca-a0a0l7gp40 Xanthomonas campestris. Carboxylic ester hydrolase .
Dienelactone_hydrolase :
xanca-XCC2566 Xanthomonas campestris, Xanthomonas oryzae, Xanthomonas fuscans, Xanthomonas perforans, Xanthomonas gardneri, Xanthomonas vesicatoria, Xanthomonas axonopodis, carboxymethylenebutenolidase ,
xanca-XCC2737 Xanthomonas campestris (pv. campestris) ( and strain 8004) hypothetical protein xcc2737 .
DPP4N_Peptidase_S9 :
xanca-XCC2397 Xanthomonas campestris (pv. campestris) peptidase ,
xanca-XCC2405 Xanthomonas campestris (pv. campestris) peptidase ,
xanca-XCC3548 Xanthomonas campestris (pv. campestris) dipeptidyl peptidase IV ,
xanca-XCC3961 Xanthomonas campestris (pv. campestris), X. vesicatoria, X. gardneri, dipeptidyl peptidase IV ,
xanca-XCC4016 Xanthomonas campestris (pv. campestris) dipeptidyl-peptidase .
Epoxide_hydrolase :
xanca-PCAD Xanthomonas campestris (pv. campestris) (and strain 8004) beta-ketoadipate enol-lactone hydrolase .
Fungal-Bact_LIP :
xanca-XCC2374 Xanthomonas campestris (pv. campestris) (and strains 8004; B100) hypothetical protein xcc2374 ,
xanca-XCC2957 Xanthomonas campestris (pv. campestris) hypothetical protein xcc2957 .
Glutamyl_Peptidase_S9 :
xanca-XCC0753 Xanthomonas campestris (pv. campestris)(and strain 8004) hypothetical protein xcc0753 .
GTSAGmotif :
xanca-XCC0080 Xanthomonas campestris (pv. campestris) esterase .
Haloperoxidase :
xanca-CPO Xanthomonas campestris (pv. campestris) ( and strains 8004; B100) non-heme chloroperoxidase .
Homoserine_transacetylase :
xanca-META Xanthomonas campestris (pv. campestris) (and strain 8004) homoserine o-acetyltransferase ,
xanca-METX Xanthomonas campestris (pv. campestris) (and strains 8004; B100)homoserine o-acetyltransferase .
Hormone-sensitive_lipase_like :
xanca-XCC0266 Xanthomonas campestris, Xanthomonas vesicatoria, lipase ,
xanca-XCC0375 Xanthomonas campestris (pv. campestris) (and strain 8004) lipase ,
xanca-XYNB2 Xanthomonas campestris (pv. campestris) xylanase .
Lipase_3 :
xanca-XCC3296 Xanthomonas campestris (pv. campestris), Xanthomonas gardneri, hypothetical protein xcc3296 ,
xanca-XCC3300 Xanthomonas campestris (pv. campestris) hypothetical protein xcc3300 ,
xanca-XCC3308 Xanthomonas campestris (pv. campestris) hypothetical protein xcc3308 ,
xanca-XCC3623 Xanthomonas campestris (pv. campestris) (and strain 8004) hypothetical protein xcc3623 .
LYsophospholipase_carboxylesterase :
xanca-XCC3514 Xanthomonas campestris (pv. campestris) carboxylesterase .
Mbeg1-like :
xanca-XCC2722 Xanthomonas campestris, Xanthomonas axonopodis, Xanthomonas perforans, Xanthomonas fuscans, phospholipase a1 .
PGAP1 :
xanca-XCC0757 Xanthomonas campestris (pv. campestris) hypothetical protein xcc0757 .
PHA_synth_III_C :
xanca-PHBC Xanthomonas campestris (pv. campestris)( and strain 8004) poly (3-hydroxybutyric acid) synthase .
PHB_depolymerase_PhaZ :
xancp-q8pax3 Xanthomonas campestris (pv. campestris) phb depolymerase .
Proline_iminopeptidase :
xanca-impep ,
xanca-XCC2817 Xanthomonas campestris (pv. campestris) (and strains 8004; B100) proline imino-peptidase ,
xanca-XCC3219 Xanthomonas campestris proline imino-peptidase ,
xanca-XCC3970 Xanthomonas campestris cysteine proteinase .
Prolyl_oligopeptidase_S9 :
xanca-XCC0243 Xanthomonas campestris (pv. campestris) ( and strain 8004) dipeptidyl aminopeptidase ,
xanca-XCC1105 Xanthomonas campestris, Xanthomonas axonopodis, Xanthomonas oryzae, X. perforans, X. vesicatoria, X. fuscans, X. gardneri alanyl dipeptidyl peptidase ,
xanca-XCC3320 Xanthomonas campestris (pv. campestris) ( and strain 8004) prolyl oligopeptidase family protein ,
xanca-XCC3885 .
UCP037442 :
xanc5-q3bup9 Xanthomonas campestris pv. vesicatoria (strain 85-10) Putative uncharacterized protein ,
xanca-XCC1734 Xanthomonas campestris (pv. campestris) (and strains B100; 8004) hypothetical protein xcc1734 .
VirJ :
xanca-acvB Xanthomonas campestris (pv. campestris; pv. raphani) virulence protein ,
xanca-Q8PB04 Xanthomonas campestris (pv. campestris; pv. raphani) virulence protein Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can
retrieve all strain data
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Xanthomonas campestris pv. campestris:
N ,
E .
Xanthomonas campestris pv. campestris str. 8004:
N ,
E .
Xanthomonas campestris pv. campestris str. B100:
N ,
E .
Xanthomonas campestris pv. campestris str. ATCC 33913:
N ,
E .
Xanthomonas campestris pv. raphani 756C:
N ,
E .
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
2 Genbank :
AE012122 ,
WP_011035515 3 UniProt :
Q8PDS5 ,
A0A0H2X4A9 ,
G0CL29 3 Interpro :
Q8PDS5 ,
A0A0H2X4A9 ,
G0CL29 3 Pfam :
Q8PDS5 ,
A0A0H2X4A9 ,
G0CL29 3 PIRSF :
Q8PDS5 ,
A0A0H2X4A9 ,
G0CL29 3 SUPERFAM :
Q8PDS5 ,
A0A0H2X4A9 ,
G0CL29
Sequence
Graphical view for this peptide sequence: xanca-XCC0260 Colored MSA for Atu1826-like (raw)
MSNPLFPTESAALTLDGPVGPLDVAVDLPEPDVAVQPVTAIVCHPLSTEG
GSMHNKVVTMAARALRELGITVVRFNFRSVGNSAGAFDHGEGEQDDLRAI
AAWVRSQRPGDTLWLAGFSFGAYVSLRAAGSLAPQVLISIAPPAGRWDFS
DVQPPAHWLVIQGDADEIVDPQAVYDWLETLDQQPTLVRMPDTSHFFHRK
LIDLRGALQHGVRRWLPATP
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M S N P L F P T E S A A L T L D G P V G P L D V A V D L P E P D V A V Q P V T A I V C H P L S T E G G S M H N K V V T M A A R A L R E L G I T V V R F N F R S V G N S A G A F D H G E G E Q D D L R A I A A W V R S Q R P G D T L W L A G F S F G A Y V S L R A A G S L A P Q V L I S I A P P A G R W D F S D V Q P P A H W L V I Q G D A D E I V D P Q A V Y D W L E T L D Q Q P T L V R M P D T S H F F H R K L I D L R G A L Q H G V R R W L P A T P
Reference
Title: Comparison of the genomes of two Xanthomonas pathogens with differing host specificitiesda Silva ACR , Ferro JA , Reinach FC , Farah CS , Furlan LR , Quaggio RB , Monteiro-Vitorello CB , Van Sluys MA , Almeida Jr NF and Kitajima JP <55 more author(s)> da Silva ACR , Ferro JA , Reinach FC , Farah CS , Furlan LR , Quaggio RB , Monteiro-Vitorello CB , Van Sluys MA , Almeida Jr NF , Alves LMC , do Amaral AM , Bertolini MC , Camargo LEA , Camarotte G , Cannavan F , Cardozo J , Chambergo F , Ciapina LP , Cicarelli RMB , Coutinho LL , Cursino-Santos JR , El-Dorry H , Faria JB , Ferreira AJS , Ferreira RCC , Ferro MIT , Formighieri EF , Franco MC , Greggio CC , Gruber A , Katsuyama AM , Kishi LT , Leite JrRP , Lemos EGM , Lemos MVF , Locali EC , Machado MA , Madeira AMBN , Martinez-Rossi NM , Martins EC , Meidanis J , Menck CFM , Miyaki CY , Moon DH , Moreira LM , Novo MTM , Okura VK , Oliveira MC , Oliveira VR , Pereira Jr HA , Rossi A , Sena JAD , Silva C , de Souza RF , Spinola LAF , Takita MA , Tamura RE , Teixeira EC , Tezza RID , Trindade dos Santos M , Truffi D , Tsai SM , White FF , Setubal JC , Kitajima JP (- 55) Ref: Nature, 417 :459, 2002 : PubMed Abstract ESTHER: da Silva_2002_Nature_417_459 PubMedSearch: da Silva 2002 Nature 417 459 PubMedID: 12024217 Gene_locus related to this paper: xanac-q8phx9 ,
xanac-q8pmm6 ,
xanax-ACVB ,
xanax-BIOH ,
xanax-CATD ,
xanax-CPO ,
xanax-DHAA ,
xancp-OleB ,
xanax-ENTF2 ,
xanax-estA1 ,
xanax-GAA ,
xanax-META ,
xanax-METX ,
xanax-PCAD ,
xanax-PHBC ,
xanax-PTRB ,
xanax-Q8PMQ8 ,
xanax-Q8PQP0 ,
xanax-XAC0198 ,
xanax-XAC0262 ,
xanax-XAC0279 ,
xanax-XAC0319 ,
xanax-XAC0372 ,
xanax-XAC0375 ,
xanax-XAC0501 ,
xanax-XAC0515 ,
xanax-XAC0574 ,
xanax-XAC0591 ,
xanax-XAC0619 ,
xanax-XAC0628 ,
xanax-XAC0736 ,
xanax-XAC0753 ,
xanax-XAC0805 ,
xanax-XAC0874 ,
xanax-XAC0916 ,
xanax-XAC1200 ,
xanax-XAC1213 ,
xanax-XAC1591 ,
xanax-XAC1713 ,
xanax-XAC1752 ,
xanax-XAC2126 ,
xanax-XAC2393 ,
xanax-XAC2532 ,
xanax-XAC2541 ,
xanax-XAC2907 ,
xanax-XAC2981 ,
xanax-XAC2987 ,
xanax-XAC2990 ,
xanax-XAC3037 ,
xanax-XAC3053 ,
xanax-XAC3152 ,
xanax-XAC3173 ,
xanax-XAC3315 ,
xanax-XAC3371 ,
xanax-XAC3619 ,
xanax-XAC3674 ,
xanax-XAC3770 ,
xanax-XAC3967 ,
xanax-XAC3999 ,
xanax-XAC4046 ,
xanax-XAC4055 ,
xanax-XAC4106 ,
xanax-XAC4221 ,
xanax-XAC4316 ,
xanax-XYNB ,
xanca-acvB ,
xanca-BIOH ,
xanca-CATD ,
xanca-CPO ,
xanca-estA1 ,
xanca-impep ,
xanca-META ,
xanca-METX ,
xanca-PCAD ,
xanca-PHBC ,
xanca-Q8PB04 ,
xanca-W78 ,
xanca-XCC0080 ,
xanca-XCC0180 ,
xanca-XCC0243 ,
xanca-XCC0260 ,
xanca-XCC0266 ,
xanca-XCC0372 ,
xanca-XCC0375 ,
xanca-XCC0753 ,
xanca-XCC0757 ,
xanca-XCC0800 ,
xanca-XCC0843 ,
xanca-XCC1105 ,
xanca-XCC1541 ,
xanca-XCC1734 ,
xanca-XCC2285 ,
xanca-XCC2374 ,
xanca-XCC2397 ,
xanca-XCC2405 ,
xanca-XCC2566 ,
xanca-XCC2722 ,
xanca-XCC2737 ,
xanca-XCC2811 ,
xanca-XCC2817 ,
xanca-XCC2854 ,
xanca-XCC2869 ,
xanca-XCC2957 ,
xanca-XCC3028 ,
xanca-XCC3164 ,
xanca-XCC3219 ,
xanca-XCC3296 ,
xanca-XCC3300 ,
xanca-XCC3308 ,
xanca-XCC3320 ,
xanca-XCC3514 ,
xanca-XCC3548 ,
xanca-XCC3555 ,
xanca-XCC3623 ,
xanca-XCC3885 ,
xanca-XCC3915 ,
xanca-XCC3961 ,
xanca-XCC3970 ,
xanca-XCC4016 ,
xanca-XCC4096 ,
xanca-XCC4180 ,
xanca-XYNB ,
xanca-XYNB2 ,
xancb-b0rq23 ,
xancp-q8pax3 ,
xancp-y2094 Abstract
The genus Xanthomonas is a diverse and economically important group of bacterial phytopathogens, belonging to the gamma-subdivision of the Proteobacteria. Xanthomonas axonopodis pv. citri (Xac) causes citrus canker, which affects most commercial citrus cultivars, resulting in significant losses worldwide. Symptoms include canker lesions, leading to abscission of fruit and leaves and general tree decline. Xanthomonas campestris pv. campestris (Xcc) causes black rot, which affects crucifers such as Brassica and Arabidopsis. Symptoms include marginal leaf chlorosis and darkening of vascular tissue, accompanied by extensive wilting and necrosis. Xanthomonas campestris pv. campestris is grown commercially to produce the exopolysaccharide xanthan gum, which is used as a viscosifying and stabilizing agent in many industries. Here we report and compare the complete genome sequences of Xac and Xcc. Their distinct disease phenotypes and host ranges belie a high degree of similarity at the genomic level. More than 80% of genes are shared, and gene order is conserved along most of their respective chromosomes. We identified several groups of strain-specific genes, and on the basis of these groups we propose mechanisms that may explain the differing host specificities and pathogenic processes.
Other Papers
Xanthomonas campestris (pv. campestris) hypothetical protein xcc1541