Gene_locus Report for: xanor-q5gw19

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Xanthomonadales: N E > Xanthomonadaceae: N E > Xanthomonas: N E > Xanthomonas oryzae: N E > Xanthomonas oryzae pv. oryzae: N E

6_AlphaBeta_hydrolase : xanor-q5h1w4Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) hypothetical protein (xoo1704), xanor-q5h5m9Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) hydrolase, xanor-q5h5s2Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) hypothetical protein, xanop-a0a0k0gmb7Xanthomonas oryzae pv. oryzae, Uncharacterized protein.
abh_upf0017 : xanor-q5gu74Xanthomonas oryzae pv. oryzae (and strains MAFF 311018; PXO99A) hypothetical protein.
BioH : xanor-biohXanthomonas oryzae pv. oryzae (and strains MAFF 311018; PXO99A) carboxylesterase bioh (EC 3.1.1.1) (biotin synthesis protein bioh).
Carboxymethylbutenolide_lactonase : xanor-q5h5n1Xanthomonas oryzae, Xanthomonas vasicola, Xanthomonas fuscans; Xanthomonas campestris b-ketoadipate enol-lactone hydrolase.
Dienelactone_hydrolase : xanor-q5h2y0Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) hypothetical protein.
DPP4N_Peptidase_S9 : xanor-q5gvh6Xanthomonas oryzae pv. oryzae dipeptidyl peptidase IV, xanor-q5gy36Xanthomonas oryzae pv. oryzae peptidase, xanor-q5gy47Xanthomonas oryzae pv. oryzae peptidase, xanor-q5h5w8Xanthomonas oryzae pv. oryzae dipeptidyl peptidase IV, xanor-Q93M73Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) putative dipeptidyl peptidase.
Epoxide_hydrolase : xanor-q5gyv6Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) beta-ketoadipate enol-lactone hydrolase.
Fungal-Bact_LIP : xanor-q5h5j0 Xanthomonas oryzae pv. oryzae Lipase/esterase (Fragment) [lipA] Putative uncharacterized protein.
Glutamyl_Peptidase_S9 : xanor-q5gul4Xanthomonas oryzae pv. oryzae hypothetical protein.
Haloalkane_dehalogenase-HLD1 : xanor-q5gv06Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) haloalkane dehalogenase HLDIII.
Homoserine_transacetylase : xanor-metxXanthomonas oryzae, Xanthomonas perforans, Xanthomonas fuscans, homoserine o-acetyltransferase (homoserine transacetylase) (hta), xanor-q5h1v0Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) homoserine o-acetyltransferase.
Lipase_3 : xanor-q5guw6Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) hypothetical protein.
LYsophospholipase_carboxylesterase : xanor-q5gvk9Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) carboxylesterase.
PHA_synth_III_C : xanor-q5h0p6Xanthomonas oryzae pv. oryzae ( and strain MAFF 311018) poly (3-hydroxybutyric acid) synthase.
PHB_depolymerase_PhaZ : xanor-q5h1g5Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) phb depolymerase.
PhoPQ_related : xanor-q5h236Xanthomonas oryzae pv. oryzae (and strain MAFF 311018; PXO99A) Putative uncharacterized protein.
Proline_iminopeptidase : xanor-q5h5x9Xanthomonas oryzae pv. oryzae cysteine proteinase.
Prolyl_oligopeptidase_S9 : xanor-q5guj3Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) dipeptidyl anminopeptidase, xanor-q5gvh5Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) prolyl oligopeptidase family protein.
T6SS-TLE3 : xanop-a0a0k0gpc4Xanthomonas oryzae pv. oryzae (strain PXO99A). DUF3274 domain-containing protein.
Tannase : xanor-q5h0m2Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) tannase.
Thioesterase : xanor-q5gwc8Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) hydrolase.
VirJ : xanor-acvBXanthomonas oryzae pv. oryzae; Xanthomonas perforans; Xanthomonas fuscans subsp. aurantifolii, virulence protein, xanor-q5h1l1Xanthomonas oryzae; Xanthomonas campestris virulence protein

Title: The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice
Lee BM, Park YJ, Park DS, Kang HW, Kim JG, Song ES, Park IC, Yoon UH, Hahn JH and Go SJ <9 more author(s)> Lee BM, Park YJ, Park DS, Kang HW, Kim JG, Song ES, Park IC, Yoon UH, Hahn JH, Koo BS, Lee GB, Kim H, Park HS, Yoon KO, Kim JH, Jung CH, Koh NH, Seo JS, Go SJ (- 9)
Ref: Nucleic Acids Research, 33:577, 2005 : PubMed
Abstract


ESTHER: Lee_2005_Nucleic.Acids.Res_33_577
PubMedSearch: Lee 2005 Nucleic.Acids.Res 33 577
PubMedID: 15673718
Gene_locus related to this paper: xanax-GAA, xanax-PTRB, xanax-XAC0628, xanax-XAC0736, xanax-XAC1713, xanax-XAC3152, xanca-impep, xanca-XCC1105, xanca-XCC2566, xanor-acvB, xanor-bioh, xanor-metx, xanor-q5gu74, xanor-q5guj3, xanor-q5gul4, xanor-q5guw6, xanor-q5gv06, xanor-q5gvh5, xanor-q5gvh6, xanor-q5gvk9, xanor-q5gw19, xanor-q5gwc8, xanor-q5gy36, xanor-q5gy47, xanor-q5gyv6, xanor-q5gz98, xanor-q5h0m2, xanor-q5h0p6, xanor-q5h1g5, xanor-q5h1l1, xanor-q5h1v0, xanor-q5h1w4, xanor-q5h2y0, xanor-q5h3e2, xanor-q5h3e8, xanor-q5h5j0, xanor-q5h5m9, xanor-q5h5n1, xanor-q5h5s2, xanor-q5h5w8, xanor-q5h5x9, xanor-q5h236, xanor-Q93M73

Abstract

The nucleotide sequence was determined for the genome of Xanthomonas oryzae pathovar oryzae (Xoo) KACC10331, a bacterium that causes bacterial blight in rice (Oryza sativa L.). The genome is comprised of a single, 4 941 439 bp, circular chromosome that is G + C rich (63.7%). The genome includes 4637 open reading frames (ORFs) of which 3340 (72.0%) could be assigned putative function. Orthologs for 80% of the predicted Xoo genes were found in the previously reported X.axonopodis pv. citri (Xac) and X.campestris pv. campestris (Xcc) genomes, but 245 genes apparently specific to Xoo were identified. Xoo genes likely to be associated with pathogenesis include eight with similarity to Xanthomonas avirulence (avr) genes, a set of hypersensitive reaction and pathogenicity (hrp) genes, genes for exopolysaccharide production, and genes encoding extracellular plant cell wall-degrading enzymes. The presence of these genes provides insights into the interactions of this pathogen with its gramineous host.