xentr-d2x2k6

 
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) Neuroligin 3

Relationship
Family Neuroligin
Block C
Xenopus tropicalis position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Sarcopterygii: N E > Dipnotetrapodomorpha: N E > Tetrapoda: N E > Amphibia: N E > Batrachia: N E > Anura: N E > Pipoidea: N E > Pipidae: N E > Xenopodinae: N E > Xenopus [genus]: N E > Silurana: N E > Xenopus tropicalis: N E

Molecular evidence
Database
No mutation
No structure
No kinetic



3 Genbank : GQ489237, AAMC01038511, AAMC01038512
1 UniProt : D2X2K6
1 UniProtTrembl : D2X2K6
1 Interpro : D2X2K6
1 Prodom : D2X2K6
1 Pfam : D2X2K6
1 PIRSF : D2X2K6
1 SUPERFAM : D2X2K6
1 QuickSwissBlast : D2X2K6
 
Sequence
Graphical view for this peptide sequence: xentr-d2x2k6
Colored MSA for Neuroligin (raw)
MHGVGLKVAPRKLSLVLWVLSVTSRVLSSHAQVYSQTVNTHYGKLRGTRV
PLPSEILGPVDQYLGVPYAAPPVGEKRFLPPEPPPSWSGIRNATHFSPVC
PQNIQNAVPDIMMPVWFTSNLDTVTGYLQEQSEDCLYLNIYVPTEDDIRD
TGAKPVMVYIHGGSYMEGSGNMIDGSVLASYGNVVVITLNYRVGVLGFLS
TGDQAAKGNYGLLDQIQALRWVSENVAFFGGDPHRITVFGSGIGASCVSL
LTLSHHSEGLFQRAIIQSGSALSSWAVNYQPVKYTRLLAEKVGCNVLDTV
DMVDCLRQKSAKELVEQDIQPARYHVAFGPVIDGDVIPDDPEILMEQGEF
LNYDIMLGVNQGEGLKFVENVVDAEDGVSGSDFDYSVSNFVDNLYGYPEG
KDTLRETIKFMYTDWADRDNPETRRKTLVALFTDHQWVEPSVVTADLHAR
YGSPTYFYAFYHHCQSLMKPAWADAAHGDEVPYVFGVPMVGPTDLFPCNF
SKNDVMLSAVVMTYWTNFAKTGDPNKPVPQDTKFIHTKANRFEEVAWSKY
NPRDQLYLHIGLKPRVRDHYRATKVAFWKHLVPHLYNLHDMFHYTSTTTK
VPPSDTTQNSHITRRPKVWDTKRPGVSPTFNGPVAKWDPELDPVDPVVIQ
DPRDYSTELSVTIAVGASLLFLNVLAFAALYYRNDKRRQDTQRQPSPQRP
AVTRDPAHSPVPPEELNSLQINAGHPECEGGGVSGHDNLRLPTLPDYTLT
LRRSPDDIPLMTPNTITMIPNSLVGLQSLHPYNTFSAGFNNTGLPHSHST
TRV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MHGVGLKVAPRKLSLVLWVLSVTSRVLSSHAQVYSQTVNTHYGKLRGTRV
PLPSEILGPVDQYLGVPYAAPPVGEKRFLPPEPPPSWSGIRNATHFSPVC
PQNIQNAVPDIMMPVWFTSNLDTVTGYLQEQSEDCLYLNIYVPTEDDIRD
TGAKPVMVYIHGGSYMEGSGNMIDGSVLASYGNVVVITLNYRVGVLGFLS
TGDQAAKGNYGLLDQIQALRWVSENVAFFGGDPHRITVFGSGIGASCVSL
LTLSHHSEGLFQRAIIQSGSALSSWAVNYQPVKYTRLLAEKVGCNVLDTV
DMVDCLRQKSAKELVEQDIQPARYHVAFGPVIDGDVIPDDPEILMEQGEF
LNYDIMLGVNQGEGLKFVENVVDAEDGVSGSDFDYSVSNFVDNLYGYPEG
KDTLRETIKFMYTDWADRDNPETRRKTLVALFTDHQWVEPSVVTADLHAR
YGSPTYFYAFYHHCQSLMKPAWADAAHGDEVPYVFGVPMVGPTDLFPCNF
SKNDVMLSAVVMTYWTNFAKTGDPNKPVPQDTKFIHTKANRFEEVAWSKY
NPRDQLYLHIGLKPRVRDHYRATKVAFWKHLVPHLYNLHDMFHYTSTTTK
VPPSDTTQNSHITRRPKVWDTKRPGVSPTFNGPVAKWDPELDPVDPVVIQ
DPRDYSTELSVTIAVGASLLFLNVLAFAALYYRNDKRRQDTQRQPSPQRP
AVTRDPAHSPVPPEELNSLQINAGHPECEGGGVSGHDNLRLPTLPDYTLT
LRRSPDDIPLMTPNTITMIPNSLVGLQSLHPYNTFSAGFNNTGLPHSHST
TRV

no DNA




References
    Title: The genome of the Western clawed frog Xenopus tropicalis
    Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S and Rokhsar DS <38 more author(s)>
    Ref: Science, 328:633, 2010 : PubMed

            

    Title: Characterization of the neuroligin gene family expression and evolution in zebrafish
    Rissone A, Sangiorgio L, Monopoli M, Beltrame M, Zucchi I, Bussolino F, Arese M, Cotelli F
    Ref: Developmental Dynamics, 239:688, 2010 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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