Gene_Locus Report

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Gene_locus Report for: yerpe-PTRB

Yersinia pestis, Yersinia pseudotuberculosis, oligopeptidase b (EC 3.4.21.83)

Comment
Other strains: Yersinia pestis (strain D182038; KIM D27; Z176003; Pestoides A; CA88-4125; D106004; Pestoides F; biovars Antiqua (UG05-0454; E1979001; B42003004; Nepal516; Angola; Antiqua) Orientalis (IP275; F1991016; India 195; MG05-1020; PEXU2) Mediaevalis (K1973002; Harbin 35), Yersinia pseudotuberculosis (serotype O:3 (strain YPIII); serotype O:1b (strain IP 31758); serotype IB (strain PB1/+))


Relationship
Family|S9N_PREPL_Peptidase_S9
Block| X
Position in NCBI Life Tree|Yersinia pestis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Enterobacterales: N E > Yersiniaceae: N E > Yersinia: N E > Yersinia pseudotuberculosis complex: N E > Yersinia pestis: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : BX936398, AJ414150, AE013855
3 UniProt : Q66BW0, Q74UT4, Q8D097
3 UniProt : Q8D097, Q74UT4, Q66BW0
3 Interpro : Q8D097, Q74UT4, Q66BW0
3 Pfam : Q8D097, Q74UT4, Q66BW0
3 PIRSF : Q8D097, Q74UT4, Q66BW0
3 SUPERFAM : Q8D097, Q74UT4, Q66BW0
Sequence
Graphical view for this peptide sequence: yerpe-PTRB
Colored MSA for S9N_PREPL_Peptidase_S9 (raw)
MMTPPKADKRPYPMTRHGDTRVDDYYWLRDDERTDADVLNYLQAENAFTA
AVLKPQQQLRETLYQEMVGRIPPQEESVPYVRNGYRYQTRFEPGNEYAIY
VRQPVSTDSDWETLLDGNQRAEGHEFYTLGGLDVSPDNQLLAVAEDYLSR
RQYDIRIKNLSSGGWHDEVISNTSGGFEWANDSKTLYYVRKHEKTLLPYQ
VYRHVVGTDPEQDKLIYQESDDTFYVSLEKTTSERFILIHLSSTTTSEIL
LLDADLPEPVPQVFAPRRKDHEYGVDHYKQHFYIRSNKEGKNFGLYKIED
SQGCSDFADESQWALLIAPRTDVMLEGFSLFRDWLVVEERSEGLTHLRQI
HWSTGEEKSITFDDPTYVTWLAYNPEPETALLRYGYSSMTTPSSMFEINM
DSGERQLLKQQEVKDFTPEKYRSERIWVTASDGVKIPVSLVYHRDYFVSG
SNPLLVYAYGSYGSSMDPVFSSSRLSLLDRGFVFALAHIRGGGELGQQWY
EDGKLLNKLNTFSDFTDVTKALVNEGYGDAQRVFAMGGSAGGLLMGVIVN
QAPELYKAVVAQVPFVDVVTTMLDESIPLTTGEYDEWGNPNDKVYYDYIK
QYSPYDQVKAQDYPHMLVTTGLHDSQVQYWEPAKWVAKLREMKTDDHQLL
LYTDMDSGHGGKSGRFKAYEDIALEYAFILSLI
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MMTPPKADKRPYPMTRHGDTRVDDYYWLRDDERTDADVLNYLQAENAFTA
AVLKPQQQLRETLYQEMVGRIPPQEESVPYVRNGYRYQTRFEPGNEYAIY
VRQPVSTDSDWETLLDGNQRAEGHEFYTLGGLDVSPDNQLLAVAEDYLSR
RQYDIRIKNLSSGGWHDEVISNTSGGFEWANDSKTLYYVRKHEKTLLPYQ
VYRHVVGTDPEQDKLIYQESDDTFYVSLEKTTSERFILIHLSSTTTSEIL
LLDADLPEPVPQVFAPRRKDHEYGVDHYKQHFYIRSNKEGKNFGLYKIED
SQGCSDFADESQWALLIAPRTDVMLEGFSLFRDWLVVEERSEGLTHLRQI
HWSTGEEKSITFDDPTYVTWLAYNPEPETALLRYGYSSMTTPSSMFEINM
DSGERQLLKQQEVKDFTPEKYRSERIWVTASDGVKIPVSLVYHRDYFVSG
SNPLLVYAYGSYGSSMDPVFSSSRLSLLDRGFVFALAHIRGGGELGQQWY
EDGKLLNKLNTFSDFTDVTKALVNEGYGDAQRVFAMGGSAGGLLMGVIVN
QAPELYKAVVAQVPFVDVVTTMLDESIPLTTGEYDEWGNPNDKVYYDYIK
QYSPYDQVKAQDYPHMLVTTGLHDSQVQYWEPAKWVAKLREMKTDDHQLL
LYTDMDSGHGGKSGRFKAYEDIALEYAFILSLI


References
7 more
    Title: Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis
    Chain PS, Carniel E, Larimer FW, Lamerdin J, Stoutland PO, Regala WM, Georgescu AM, Vergez LM, Land ML and Garcia E <13 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 101:13826, 2004 : PubMed

            

    Title: Genome sequence of Yersinia pestis KIM
    Deng W, Burland V, Plunkett G, 3rd, Boutin A, Mayhew GF, Liss P, Perna NT, Rose DJ, Mau B and Perry RD <11 more author(s)>
    Ref: Journal of Bacteriology, 184:4601, 2002 : PubMed

            

    Title: Genome sequence of Yersinia pestis, the causative agent of plague.
    Parkhill J, Wren BW, Thomson NR, Titball RW, Holden MTG, Prentice MB, Sebaihia M, James KD, Churcher C and Barrell BG <25 more author(s)>
    Ref: Nature, 413:523, 2001 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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