Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: yerpe-YPO4014

Yersinia pestis putative membrane protein (hypothetical)

Relationship
Family|Bacterial_lip_FamI.8
Block| X
Position in NCBI Life Tree|Yersinia pestis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Enterobacterales: N E > Yersiniaceae: N E > Yersinia: N E > Yersinia pseudotuberculosis complex: N E > Yersinia pestis: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 1 more: CAL22592, PWF37459, WP_002209573
1 UniProt : A0A384KZC6
1 Interpro : A0A384KZC6
1 Pfam : A0A384KZC6
1 PIRSF : A0A384KZC6
1 SUPERFAM : A0A384KZC6
Sequence
Graphical view for this peptide sequence: yerpe-YPO4014
Colored MSA for Bacterial_lip_FamI.8 (raw)
MPAIAIKRWIKRIVLVLVVISITILAIRIYDTQRGPKLELWHTFVPHEMR
AAEIDKASWADYIKTENNIFDEVRINVTEKLEPSTQVPLNRYYSGSAIYP
PHFKNDWNRSYILQPEGEPKGAVVLLHGLTDTPYSLRHIAENYRQRGYVA
IGIRLPAHGSVPAALTDVEWQDWLAATRLAVREAKALSGPDLPLHVVGFS
NGGALAMKYTLDSMDDPKLAKPARVILISPMIGVTSFARFAGIAGWPAIF
PAFAKAAWLGIVPEFNPFKYNSFPVNAARQSYLLTSVLQQHIARDARNNK
MDELPPILTFQSLMDSTVSTRAVVTALYNHLPNNGSEVVLFDLNRAASFG
PLLRTSSYTALARLLPPGPRNYSTTVITNVSPQSNETLALTTRAGETNET
SVPTGLVYPPDIFSLSHVALPFPMSDSLYGRYPDPRDQYGISLGTFAARG
ERAVLVVGLDSLMRISSNPFYPYMLQRIDDKIDAPVQ
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MPAIAIKRWIKRIVLVLVVISITILAIRIYDTQRGPKLELWHTFVPHEMR
AAEIDKASWADYIKTENNIFDEVRINVTEKLEPSTQVPLNRYYSGSAIYP
PHFKNDWNRSYILQPEGEPKGAVVLLHGLTDTPYSLRHIAENYRQRGYVA
IGIRLPAHGSVPAALTDVEWQDWLAATRLAVREAKALSGPDLPLHVVGFS
NGGALAMKYTLDSMDDPKLAKPARVILISPMIGVTSFARFAGIAGWPAIF
PAFAKAAWLGIVPEFNPFKYNSFPVNAARQSYLLTSVLQQHIARDARNNK
MDELPPILTFQSLMDSTVSTRAVVTALYNHLPNNGSEVVLFDLNRAASFG
PLLRTSSYTALARLLPPGPRNYSTTVITNVSPQSNETLALTTRAGETNET
SVPTGLVYPPDIFSLSHVALPFPMSDSLYGRYPDPRDQYGISLGTFAARG
ERAVLVVGLDSLMRISSNPFYPYMLQRIDDKIDAPVQ


References
    Title: Genome sequence of Yersinia pestis KIM
    Deng W, Burland V, Plunkett G, 3rd, Boutin A, Mayhew GF, Liss P, Perna NT, Rose DJ, Mau B and Perry RD <11 more author(s)>
    Ref: Journal of Bacteriology, 184:4601, 2002 : PubMed

            

    Title: Genome sequence of Yersinia pestis, the causative agent of plague.
    Parkhill J, Wren BW, Thomson NR, Titball RW, Holden MTG, Prentice MB, Sebaihia M, James KD, Churcher C and Barrell BG <25 more author(s)>
    Ref: Nature, 413:523, 2001 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer