Paper Report for: Colbourne_2011_Science_331_555 Reference
Title: The ecoresponsive genome of Daphnia pulex
Colbourne JK , Pfrender ME , Gilbert D , Thomas WK , Tucker A , Oakley TH , Tokishita S , Aerts A , Arnold GJ and Boore JL <59 more author(s)> Colbourne JK , Pfrender ME , Gilbert D , Thomas WK , Tucker A , Oakley TH , Tokishita S , Aerts A , Arnold GJ , Basu MK , Bauer DJ , Caceres CE , Carmel L , Casola C , Choi JH , Detter JC , Dong Q , Dusheyko S , Eads BD , Frohlich T , Geiler-Samerotte KA , Gerlach D , Hatcher P , Jogdeo S , Krijgsveld J , Kriventseva EV , Kultz D , Laforsch C , Lindquist E , Lopez J , Manak JR , Muller J , Pangilinan J , Patwardhan RP , Pitluck S , Pritham EJ , Rechtsteiner A , Rho M , Rogozin IB , Sakarya O , Salamov A , Schaack S , Shapiro H , Shiga Y , Skalitzky C , Smith Z , Souvorov A , Sung W , Tang Z , Tsuchiya D , Tu H , Vos H , Wang M , Wolf YI , Yamagata H , Yamada T , Ye Y , Shaw JR , Andrews J , Crease TJ , Tang H , Lucas SM , Robertson HM , Bork P , Koonin EV , Zdobnov EM , Grigoriev IV , Lynch M , Boore JL (- 59) Ref: Science,
331 :555, 2011 :
PubMed Abstract PubMedSearch: Colbourne 2011 Science 331 555 PubMedID: 21292972 Gene_locus related to this paper: dappu-e9fut0 ,
dappu-e9fut9 ,
dappu-e9fvw6 ,
dappu-e9fxt4 ,
dappu-e9fyr6 ,
dappu-e9fzg6 ,
dappu-e9g1e2 ,
dappu-e9g1e6 ,
dappu-e9g1e7 ,
dappu-e9g1e8 ,
dappu-e9g1v3 ,
dappu-e9g1z2 ,
dappu-e9gb99 ,
dappu-e9gba0 ,
dappu-e9gcb4 ,
dappu-e9gdv5 ,
dappu-e9gdv7 ,
dappu-e9gi24 ,
dappu-e9gj77 ,
dappu-e9gja7 ,
dappu-e9gmp5 ,
dappu-e9gmr0 ,
dappu-e9gn32 ,
dappu-e9gp76 ,
dappu-e9gp82 ,
dappu-e9gp98 ,
dappu-e9gp99 ,
dappu-e9gvl2 ,
dappu-e9gzn7 ,
dappu-e9h1p4 ,
dappu-e9h2c8 ,
dappu-e9h2c9 ,
dappu-e9h6x9 ,
dappu-e9h6y4 ,
dappu-e9h7w9 ,
dappu-e9h8r4 ,
dappu-e9hd06 ,
dappu-e9hh56 ,
dappu-e9hh57 ,
dappu-e9hh59 ,
dappu-e9hmp4 ,
dappu-e9hp64 ,
dappu-e9hp65 ,
dappu-e9hpy8 ,
dappu-e9htg8 ,
dapul-ACHE1 ,
dapul-ACHE2 ,
dappu-e9gnj1 ,
dappu-e9gu36 ,
dappu-e9hpc4 ,
dappu-e9gb07 ,
dappu-e9glp6 ,
dappu-e9glp5 ,
dappu-e9gjv2 ,
dappu-e9h0c7 ,
dappu-e9g4g2 ,
dappu-e9gw69 ,
dappu-e9h3h9 ,
dappu-e9g545 ,
dappu-e9gw71 ,
dappu-e9gw68 ,
dappu-e9h3e7 ,
dappu-e9gfg9 ,
dappu-e9fvy6 ,
dappu-e9hgt2 Abstract
We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200 megabases and contains at least 30,907 genes. The high gene count is a consequence of an elevated rate of gene duplication resulting in tandem gene clusters. More than a third of Daphnia's genes have no detectable homologs in any other available proteome, and the most amplified gene families are specific to the Daphnia lineage. The coexpansion of gene families interacting within metabolic pathways suggests that the maintenance of duplicated genes is not random, and the analysis of gene expression under different environmental conditions reveals that numerous paralogs acquire divergent expression patterns soon after duplication. Daphnia-specific genes, including many additional loci within sequenced regions that are otherwise devoid of annotations, are the most responsive genes to ecological challenges.
Related information
Gene_Locus | dappu-e9fut0 , dappu-e9fut9 , dappu-e9fvw6 , dappu-e9fxt4 , dappu-e9fyr6 , dappu-e9fzg6 , dappu-e9g1e2 , dappu-e9g1e6 , dappu-e9g1e7 , dappu-e9g1e8 , dappu-e9g1v3 , dappu-e9g1z2 , dappu-e9gb99 , dappu-e9gba0 , dappu-e9gcb4 , dappu-e9gdv5 , dappu-e9gdv7 , dappu-e9gi24 , dappu-e9gj77 , dappu-e9gja7 , dappu-e9gmp5 , dappu-e9gmr0 , dappu-e9gn32 , dappu-e9gp76 , dappu-e9gp82 , dappu-e9gp98 , dappu-e9gp99 , dappu-e9gvl2 , dappu-e9gzn7 , dappu-e9h1p4 , dappu-e9h2c8 , dappu-e9h2c9 , dappu-e9h6x9 , dappu-e9h6y4 , dappu-e9h7w9 , dappu-e9h8r4 , dappu-e9hd06 , dappu-e9hh56 , dappu-e9hh57 , dappu-e9hh59 , dappu-e9hmp4 , dappu-e9hp64 , dappu-e9hp65 , dappu-e9hpy8 , dappu-e9htg8 , dapul-ACHE1 , dapul-ACHE2 , dappu-e9gnj1 , dappu-e9gu36 , dappu-e9hpc4 , dappu-e9gb07 , dappu-e9glp6 , dappu-e9glp5 , dappu-e9gjv2 , dappu-e9h0c7 , dappu-e9g4g2 , dappu-e9gw69 , dappu-e9h3h9 , dappu-e9g545 , dappu-e9gw71 , dappu-e9gw68 , dappu-e9h3e7 , dappu-e9gfg9 , dappu-e9fvy6 , dappu-e9hgt2
Citations formats
Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Caceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Frohlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kultz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL (2011) Science 331 : 555-61Science 331 : 555-61
