Reference sequence (1): aviad-O55278 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 aviad-O55278 100.0% ------------------------------MANFTSVR---------------------------HEGHINYF----------------------------------------------- 2 aviad-Q9Q9I2 11.4% ------------------------------------------------------------------------------------------------------------------------ 3 aviad-RTL6 12.3% MGG-----YRSKFCVLFQLFGVLL-----GASAFSGTK---------------------------SEGCHDLV-------NRSCVAMPPA-----------------TKLEAPKSAGNPN 4 mardi-ORF1 10.4% --------------------------------MWTDINP---------------------PSRKPLHGDS---LDIKTNEEHITLSSPRTS---TKTTNENGHEKDSKDIKFSFST---N 5 melhe-LORF1 10.5% MPAKGEVEHHAGYGVALAILALLLIHATALIMIFSDVNLRTGQHGDDVHLRYPLTFDGATPPRAGDHGHSELWTDIKNNTDSTYSSQPPTMLFPKPTTVSHYPEHNSTTIIIPAS----- 6 aviad-Q64767 7.4% ------------------------------MRGFV----------------------------------------------------PP-----------------------TSS----- 7 aviad-Q64777 22.1% ------------------------------MSALSSC----------------------------FNGSDSRW-------------DPPY------------PKADVRRLMGTYS----- consensus/100% ........................................................................................................................ consensus/90% ........................................................................................................................ consensus/80% .................................hs..................................................................................... consensus/70% ..............................h.haosh.............................pGp..................P........................s.S..... 1 aviad-O55278 100.0% ---------------------------WYGQHGMAPSKIHGP---------------------------------LHDDDMIYWRLRDRGFLRGGREKNLILLVHGWH------------ 2 aviad-Q9Q9I2 11.4% ------------------------------------------------------------------------------------------------------------------------ 3 aviad-RTL6 12.3% RLP--------------------SRITWYGSHGGVPK--------------------------------------FHDARYEYGVYHKMHNAFAGK-SDIVLLIPGWY------------ 4 mardi-ORF1 10.4% RHPISVSPTTDIVSIAVSHNNPMGGDTWQVSRNG-PNTVHVPIYGKPILRLNGEELSTQIAHMSMWDELAGSFKTFAATAESFHMITTTHLFNKTLHKDVFFVVHGWH------------ 5 melhe-LORF1 10.5% ----EMPAMQDIVSIVVSKRHSGSRDAWHVSEYG-PNIIRMPHTHKDIPKPFNSILSNQFALLTMWDNLVGMFKTFWGNAMGFHQMIREGLVDLRLHTDVIFLVHGWH------------ 6 aviad-Q64767 7.4% -----------------------------------PD----------------------------------------------------------------------------------- 7 aviad-Q64777 22.1% -----------------------------------PDFPSWP------------------KLIVWWNE---TFLTFSDGPWVVSQMRRLGVLDGKDSGELIILVQDMYPDVCPLINRARY consensus/100% ........................................................................................................................ consensus/90% ........................................................................................................................ consensus/80% ...................................Pp................................................................................... consensus/70% ...................................Ps......................................h.ss...h..hhp.t.h.ht..tplhhll.sha............ 1 aviad-O55278 100.0% --GLHRTFDIFFSFLRFHQKMTPDVGVLLVDWGVQGADKLILGDAAYHAVTI---------NIDGLLKNL-NRTNLHCIGHSLGAHACGAICRRFN-QLQK-KKCTRIVGLDPAGPLFK- 2 aviad-Q9Q9I2 11.4% -----MGYQSFRQVLRVHQNMTPAVALLLVDWNLYYDYD---------GLYV---------DFGKFLSDIPHSKRLHCIGHSAGAHACSTICRQWT-YISGDRRCTRIVGLEP------- 3 aviad-RTL6 12.3% -----LGYDDFRKVLRFHQKMTPAVGVVLVDYRLYYDTD---------GLHA---------DFRKFLVDIPDAKKLHCIGHSAGAHACSTICRQYS-QMSKGHRCIRIVGLEP------- 4 mardi-ORF1 10.4% --GITNDTHIFLSAVRLLTRMMPTSCIIYLSWESQGAIG-TAADAILLARRV---------NITQFLSAMPSQLRIHCMGHSLGSYVCGSICRQYH-SLMS-GICKGILGINPYE----- 5 melhe-LORF1 10.5% --GRTNDTEFFLSANRLLTRMIPSAAVVYVSWDPQGAME-PAADAILLARRI---------NVTQFLYAVPSNMGIQCIGHSLGSYVCGSICRQYY-YTGK-GRCKRILGINAYE----- 6 aviad-Q64767 7.4% ---------------------------------------------------------------------------------------------------RGSKKVGRIVALDPPLESFQG 7 aviad-Q64777 22.1% DGTYKWTSEMMRKILRMHTIMTPESPVILLDWTNQLRDICKKVDALLWGQDVRGPAYYAVRTTAHFFTEF-KDHRIHCIGMSLGGTVCAALSRQLLVRTEGQKRFARIVALDPPLESFQG consensus/100% ....................................................................................................t.thhhtIlulps....... consensus/90% ....................................................................................................t.thhhtIlulps....... consensus/80% ......s.p.hhph.Rhhp.MhPtssllhlsat..ht...........u..h.........shtthh.th.pthtlpChGhShGuhsCuslsRph...htt.t+stRIlulpP....... consensus/70% ......shc.FhphlRhhppMhPsssllhlsWp..hs.t.........uhpl.........shspFL.sh.pphplHCIGHShGuasCusICRQa...hpt.++CtRIVGL-P....... 1 aviad-O55278 100.0% ------------TNSPYPYLTKAR-----LSKEDADYVALFMTNRRMMGLHELEGDEYITPYIDGTYLNHCPFVGKWTGTITAENYQGRKVTEYIDLGTV-AKSG-------------II 2 aviad-Q9Q9I2 11.4% ------------TFVTGG-----------LDKNDADYVAVLKTEGSWITGGYTASEDIMLEDKGG---RGCGIHGGWSGRVCAESVWGQTVCEEFSWRDTWSKSG--------CFHRLIV 3 aviad-RTL6 12.3% ------------TFVSGG-----------LDKLDADYVVVLKTQYSWITGGYTASEDLMVEDKGG---RSCGIHGGWSGRVCGENVWGATVCEEFSWGNTFSLSG--------CYHRMIV 4 mardi-ORF1 10.4% ------------VLFSAPDLYARMHVD--TIRLDAEYVAIFATTSQYLSTSDSDADEYIIVNDAVFMNSVCANPYEWNIHLCTTGYGELKSCERFGAANVTTSPGVVEDGSQICLRMLPI 5 melhe-LORF1 10.5% ------------ILSTDSSLISRIQSD--TIRSDAEYVSIFSMGERYIRTVYKDADEYIVAKGISRGVSTCVNPFAWKFSLCTRGVKGREYCENFGANNVTFTSGLREDGSEICERLIPV 6 aviad-Q64767 7.4% YRMDLHTKGLNLLLSSGGHWSANRDADSVISRDDADYVVVIASSIGSYGFDRPIGDEYIRSDLTGQKHEACESRAWWKGQICAWSYSGRRHCEDVHIPFDFLRSD------GLCYHIMAP 7 aviad-Q64777 22.1% YRMDLHTKGLNLLLSSGGHWSANRDADSVISRDDADYVVVIASSIGSYGFDRPIGDEYIRSDLTGQKHEACESRAWWKGQICAWSYSG-------------------------------- consensus/100% ............h..s.s...........h.+.DA-YVslh..t.t.hth....u--hhh....s...p.C...h.Wphplss.sh.t................................ consensus/90% ............h..s.s...........h.+.DA-YVslh..t.t.hth....u--hhh....s...p.C...h.Wphplss.sh.t................................ consensus/80% ............hhsoss...........h.+.DA-YVslhtop.t.hshs...u--hhh.phsu...psC...hhWphplCs.sh.G.p.sE.hth..s...ss............... consensus/70% ............hhsouu.h.tth.....ls+pDADYVslhtoshphhshshstuDEYIhschsG.h.psCs.hutWpGplCupuhtGtphCEphshsssh.pSG........C.+hh.l 1 aviad-O55278 100.0% PHTMECMLTPHGPCSFH------------------------------------------------------------------------------------------------------- 2 aviad-Q9Q9I2 11.4% PKFLKTLDVRTGLPMFHLL--NEGFKVGPVRSTWNGYTMSRDYRYASYFNHISISYMTEITYSPVL--KQDFVTPIMIIVVASSGSRMFIGGYSEQTLRYGRY---DVLTAVGY------ 3 aviad-RTL6 12.3% PKFLKTLDVKTGLPVFHVL--QEGSRVGPVRSTWNGYTLSRDYRYDSYFNHYSIKYMTEMSYSPNF--KKDFVSSIMIIVVASHDSSVYMGGYSVQTLRYGKY---DVTTEIAY------ 4 mardi-ORF1 10.4% IAVLQSLDLKSSYPLLRIAPPDASNEVTHLPSIWNIYVVGKDYRYSTYAKNDSLWYSSAICAGDT-----GFSIPSVFTVFAPPSISLRVRAAVQQ--SSTIY--KNITIYSAF------ 5 melhe-LORF1 10.5% MAVLQTLDVSSTYALLQLDPKRPSGMTAHISSVWNVYVLEKDYRYATYAKNEPVWYSTVLSVGPN-----GFTPAAVFAVLSRSDTPVIIRDAIQQ--RYSLW--GNISMHSAF------ 6 aviad-Q64767 7.4% LTFMKALDTHQADQLLSMH--------GSVPSAWSAYVTGRDYSQPTQY------YTEEVADWRMLLREDDMASSYLLLVVTE--------GNAAELWTYDPYYTKTIGMEHGYSVRWYF 7 aviad-Q64777 22.1% ------------------------------------------------------------------------------------------------------------------------ consensus/100% ........................................................................................................................ consensus/90% ........................................................................................................................ consensus/80% .thhpsh.h.ps...hp....................................................................................................... consensus/70% .thhpsLDsppu.shhph.........s.l.ShWshYsht+DYp.so.h......Y.p.hs.........shs.s.hhhVhs.........s...p..p.s.a...sl.h..ua...... 1 aviad-O55278 100.0% --------------------------------------------------------------------GVPRH----------------------------PPRPTCIP----------- 2 aviad-Q9Q9I2 11.4% ---TELAEEVLWIRHWNPSASIYLVYVITPQGFYQDSSSAPSIKDRKVMTGGCVRTMHCNPTRDPF--GRPAHYCMVTKERFPLMSYRTMLNPNGGSQVSVPPQSGCLADRDASIAMIPI 3 aviad-RTL6 12.3% ---TELAEGSLWIHHLNPNARIYLVHVITPQGFYQVSDSVAPLANRQIMTGGSVRTMYCTRTPDPL--GRPSHYCMYTKEHFPIMQYRTMLNPNGGAHINVPPTAGCLVDKNTTAGMIVS 4 mardi-ORF1 10.4% LKNTSRYYPTVTLETLGPILSAY---------AWRGRMHNSSYYPLP-LPEQEIMEYKCTH-ID------RTYTCIPTDLIYATTVWRQIFSM--GHIFPVYPSNNCLPYRPTNA--IIW 5 melhe-LORF1 10.5% IEDSPTHFPSIGIRIQSPILGAF---------AWKGRVYSGPRIQIP-VPEQAVVDYNCLP-KD------ADHLCVSTKNVSSITIWRKLLLA--NYSFSILSIDDCLPYIPHMA--VIW 6 aviad-Q64767 7.4% IRDRNVGEAPIVLYARGGGVLKFI-------RLYKGRGTLTSLGARA-MTTQEVTEFTCFRTHTYYFTGTKKYDCHPGGHRFDVPRWRSHINVS-AHHLPVPPKCGCLKFPKLFKDYVIF 7 aviad-Q64777 22.1% ------------------------------------------------------------------------------------------------------------------------ consensus/100% ........................................................................................................................ consensus/90% ........................................................................................................................ consensus/80% .......................................................................ta.............................s.ssCl............ consensus/70% ...p.hh..slhl.h.ss.h.ha.........hapsp...sshh.h..hstttlhph.C....s.......pa.Ch.st.h.sh..aRphh....s..hsl.PpssCLs...h.h..l.. 1 aviad-O55278 100.0% ---------------------------------------------VC------------------------------------------------------------------------- 2 aviad-Q9Q9I2 11.4% QLADVEVKVGHGLKVDLSKSPFWLTSIQLTDSSGTHK--LYSFWDVCQTA---AQCVFQLD------RMKKEFTVTFFNADVFELEFFLEFEVIKLKVTVSP-----LEPVSVEFPPEPT 3 aviad-RTL6 12.3% KLPDMNVTVGHKLQIDLSRSPFWLMSVHLTDRVGTHR--LVSYWDTCVTS---SQCVFHLN------RMKKEFNVTFFAEDVYDLEFFLQFEVIKLKVTVSSPVNRVVEKVTTAEPIANY 4 mardi-ORF1 10.4% RRPVLEIGVWNNITASFQRNKQ-LMALTFENHNTATNTTLLTFHDVCRESKIRSVVYFEYD------WLETSMNITVLIPGLYTLRWFFPFEIIEMPVRVSY------------------ 5 melhe-LORF1 10.5% KHPAIEVATWRNITVTFHPSVQ-LMAMRFENVLTPRNYTLMTFHDVCRADEINSGIFFEYD------WLGANMTIAVSKAGSYVLRWFFEMGIYEIPIAVYE------------------ 6 aviad-Q64767 7.4% DHPNVVGRAGEYVSLGPWSTGL-QAVVTFKPQPRRHRVVLATYWDACSNTKRRVGIDVRTDRKNHMVWLKADKPVS------REMWFVSEVDVVRVYVT--------------------- 7 aviad-Q64777 22.1% ------------------------------------------------------------------------------------------------------------------------ consensus/100% ........................................................................................................................ consensus/90% ........................................................................................................................ consensus/80% .............................................sC......................................................................... consensus/70% phssh.htshp.lphs...s....hshphps..t.pp..LhoaaDsC.ts...s.h.hphs......hhttphsls......h.h.ah..htlhch.lt..................... 1 aviad-O55278 100.0% ------------------------------------------------------------------------------------------------------------------------ 2 aviad-Q9Q9I2 11.4% ASLNSTSTDSASTVSTWNFSAATPSSSDFWSTSETASEEEVVTVQLNETEPVQAV-ALRA-IDEGSRVAASGASTGTLFLTVVGLVFLAMVAVLVSTAIRRKKVAMGLRDPSLRLLSSEE 3 aviad-RTL6 12.3% TSVNAT--------SVWESSDPTPTSEYGW--NETATNADAIMITLNASEPFPRMEALQAPVQIPSEEGSTGVSTEALFLIVVGLAFVAMMVTLLRTRSRKPK-------GTPPLLISEE 4 mardi-ORF1 10.4% --------------------------------NNSFAQ------------------ALTT------------------------------------------------------------ 5 melhe-LORF1 10.5% --------------------------------NE-------------------------------------------------------------------------------------- 6 aviad-Q64767 7.4% -----------------------------WLSPE-------------------------------------------------------------------------------------- 7 aviad-Q64777 22.1% ------------------------------------------------------------------------------------------------------------------------ consensus/100% ........................................................................................................................ consensus/90% ........................................................................................................................ consensus/80% ........................................................................................................................ consensus/70% ................................sp...................................................................................... 1 aviad-O55278 100.0% ---- 2 aviad-Q9Q9I2 11.4% SSTL 3 aviad-RTL6 12.3% SFTL 4 mardi-ORF1 10.4% -SRV 5 melhe-LORF1 10.5% --RE 6 aviad-Q64767 7.4% ---- 7 aviad-Q64777 22.1% ---- consensus/100% .... consensus/90% .... consensus/80% .... consensus/70% .... |
MView 1.56, Copyright © 1997-2013 Nigel P. Brown
#protein: highlight amino acid physicochemical properties hydrophobic => bright-green { A, G, I, L, M, P, V } large hydrophobic => dark-green { F, H, W, Y } cystein => yellow { C } negative charge => bright-blue { D, E } positive charge => bright-red { K, R } polar => purple { N, Q } small alcohol => dull-blue { S , T } any => dark-gray { X } #protein consensus: report conserved physicochemical classes, derived from the Venn diagrams of Taylor W. R. (1986). # The classification of amino acid conservation. #J. Theor. Biol. 119:205-218. alcohol => o { S, T } aliphatic => l { I, L, V } aromatic => a { F, H, W, Y } charged => c { D, E, H, K, R } hydrophobic => h { A, C, F, G, H, I, K, L, M, R, T, V, W, Y } negative => - { D, E } polar => p { C, D, E, H, K, N, Q, R, S, T } positive => + { H, K, R } small => s { A, C, D, G, N, P, S, T, V } tiny => u { A, G, S } turnlike => t { A, C, D, E, G, H, K, N, Q, R, S, T }