Reference sequence (1): capte-r7tu45 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 capte-r7tu45 100.0% MANV-------------------------QL--------------SETASLCGVETSARDHPARVFAFKGIPYAQPPTGNRRLRPPEPL-KLWQGQRDASKYGPICHQNTDAM-KNIPHK 2 capte-r7uq81 34.3% --------------------------------------------------IVGTTSHAKDSHTPIFNFRGIPYAAPPVGPLRFQPPEPI-ALWEGVHDGKHFGPICIQDLRYA-KSVHFM 3 capte-r7tuq9 27.8% ------LLLGVH-------------------------SDVHPLVKLPEGDIRGTYLPV-DGQDDSLVFYGIPYAAPPVGDLRFRAPQPP-NPWQDQRDASTIAPACPQKGSAI-NFIANM 4 capte-r7uxb2 23.9% MASKGELLITFAVTHSEDFEVEFTSAGIKFEVVLLRVVKGQPQVSLPSGDISGSVLPV-EGYDDSLVFYGIPYADPPVGPNRFRSPRPV-SPWSGIRDVSKPAPKCTQDEADS-LAMHFV 5 capte-x1yv75 26.1% -----------------------------------------------------------------HVFYGIPYAASPLGDYRFRSPRSV-TTWSGVRDASKPGPACIQDEKDY-PAMHFM 6 capte-r7u1x0 28.9% MCSY--LLAPSS-------------------------LLVGPIAVTTSGRVQGRIAPLNDASRYSYAFLAIPYATPPVGEFRFQPPQPP-KSWKGIRDATKFGAVCAQDLPRMYHTMKYL 7 capte-x2b306 29.7% -----------------------------------------PVADTKYGRVQGKFAPLNNASQYGFAFMGIPYAAPPINDLRFKSPQPV-RPWKGIRDATKVGSACPQDVPTLVYALKSM 8 capte-r7vei7 28.0% --------------------------------------------------MIGRHESAEGSFQPISAFLGIPYAQPPVGPLRFARPILLDSEWNGVLDASEYGPFCPQNPKVM-NDGAYE 9 capte-r7u3w8 26.1% MLQQ-----------------------VWLLLAMLLALSSALQVQTSSGTLEGVHTS--HTYGEVVEFLGVPFAAPPVGRLRFMPPQPH-AAWSGVREAKQYGAACAQPSQWT-GSPVFQ 10 capte-r7uhi1 24.8% MAFT--ILFIAA---------------TCSLMSALRATEVVPRVDTSSGILIGK------QSHSTWQYLGIPYARPPIGNLRFRTPKPA-FRSPVELLVQEHGPACTQHSSLS-FYGPDL consensus/100% ...................................................................ahulPaAtsPhs..Rh..P........s.h.spp.ushC.Q............ consensus/90% ..................................................h.G.......t.t..h.FhGIPYAtPPlG.hRFtsPps..t.Wps.h-spp.ushC.Qp.......h... consensus/80% ..................................................l.Gh.....tt.t..hsFhGIPYAtPPlGshRFpsPpPh.t.WpG.+DupchGshC.Qs.thh..shh.h consensus/70% ................................................u.l.Gph.sh.ps.p.shsFhGIPYAsPPlGshRFpsPpPh.p.WpGlRDAochGPhCsQc.phh.hshtah 1 capte-r7tu45 100.0% ---AVIP-----DEQSEDCLQLNVWTPSLDPSAN---KAVMVWIHGGGFAGG---WSSM-YEGVALAAYEDVVFVSINYRCGLLGFLSTGDEV---IPGNYGLLDQMEALRWISKYIRKF 2 capte-r7uq81 34.3% ---FSFP-----ENMSEDCLSLNIWSPSLNKEAC---LPVMVYIHGGSFLIG---TGEV-YDGTALCTLHGVIVVTINYRLGLLGFLFNEAAG---IRGNMGLLDQIAALKWVQKYIRHF 3 capte-r7tuq9 27.8% ---LGLP--SVEFTQSEDCLTLDVYTKSLSGK-----RPVMVFIHGGSFVTG---SSTMFYDFRAYASLEDIVVVSVQYRIGALGWMSTGDDA---LPGNLGFQDQIKALEWVQTNVALF 4 capte-r7uxb2 23.9% ---GYPP--YNTWTISENCLTLDVYTRSLTGT-----SSIV-------------------YDFRAYSSVKDIVMVSIQYRLGPLGWAGMGDEH---MPSNLGFQDQVLALTWVQENIKNF 5 capte-x1yv75 26.1% ---GAPP--YNKWKLSEDCLTLDVYTRSTTGK-----RPVIVYIHGGALQAG---QMNE-YDFRAYSSVRDIVVVPIQYRLGALGWASMEDEH---MPANLGFQDQVMALKWVQQNIHHF 6 capte-r7u1x0 28.9% ---MGLPFEFDVTGISEDCLTLDVYTPSLSGQ-----RPVMVFIHGGGFISG---WSSM-ADMRVYAAKYNVVGVAIQYRLGALGFMSTEDNT---VKGNMGFKDQILSLKWVQENIANF 7 capte-x2b306 29.7% ---MGIPLPYD-IDDSEDCLTLDVYTPSLTGK-----RPVVVHIHGGGLQSGASSWSSM-ADLRVNAVKYDQVAVSIQYRLGLLGFMSTEDGS---LGGNMGFKDQVLALKWVQDNIANF 8 capte-r7vei7 28.0% ---PTCL--PEKSSLSEDCLQLNIFTPDPSKK-----LPVLVFIHGGGYIYG---SGIL-YDGTALAAMQDIVVVSFNYRLAPFGYLHDDQGSELPATGHLGHLDQRIALQWVQKYIQYF 9 capte-r7u3w8 26.1% PLKATMP-----TEFGEDCLFLNIHIPGGTINRTKR-LPILVYIHGGNYFFG---CSNI-YRGSAFATKQNVIIITINYRLNYFGFLSTGDDR---IPGNMGLLDQVQALQWIHDNIEEF 10 capte-r7uhi1 24.8% ------------PRQSEDCLTLNVYVPQNTHSEVKEPLAVMVWIHGGAYLVG---GSEQ-FPGHLIAAQENVIVVTLNYRLGVWGFLTSGDST---IPGNMGLMDQVLALRWVQDNIASF consensus/100% .............t.uEsCL.Lsla..t.s.p......slh...................h.h.h.ss..s.lhlshpYRhs.hGah..ttt....h.uphGh.DQh.uLpWlpp.lt.F consensus/90% .............p.SEDCLpLslas.s.shp.....hslhVaIHGGsh..G........hchpshush.sllhVslpYRlu.hGaht.tstt...h.uNhGh.DQh.ALpWlpp.It.F consensus/80% ...hs.P......p.SEDCLpLslao.uhotp.....hsVhVaIHGGuh..G....up..a-hpshushpsllhVolpYRLGhhGahsstDtt...hsGNhGh.DQlhALpWVQc.ItpF consensus/70% ...hshP......p.SEDCLoLsVaTPShotp.....hPVhVaIHGGuahhG....uph.YDhpAhAuhpslVsVoIpYRLGhLGahostDss...lsGNhGhhDQlhALcWVQcNItpF 1 capte-r7tu45 100.0% GGNPDNVTILGQSAGGISCAMLLVSEAAQGLFHRAICQSGTCLIPGMTWSQ----DTAKGNTLN-AMKKL-----GCESENSQDILKFLQEISIEEI---TSKLTP-----ADIFRPCVD 2 capte-r7uq81 34.3% GGDANNVTVFGESAGAISIASLVLSPLATGLFHRAICQSGTMLYPSAAWTP----TQANKYWLK-RLQAK-----GLSGDHPSVVKSFLSNLDPYSFVE-----------SIKTSCHVID 3 capte-r7tuq9 27.8% GGNPAQVTIFGESAGAFSVSLHLVSPKSNGLFHKAIIQSGSAMTFPNFPS--------RIMANQ-LVECLEYPFSGCPSDNSSAMMDCIKTQPAANFIDIQMLKNCED--KQSVHQAVVD 4 capte-r7uxb2 23.9% GGDPDQVTIFGQSAGGYSVSLHIASPMSKGLFKRAIAQSGAFLQTVLAPPF----YNNTAATIE-FAECL-----GCPS-ESHAMAECLRNFPAERF---AVSRSNPC--SRILMQPALD 5 capte-x1yv75 26.1% GGDPNQVTIIGQSAGGWSITMHIISPMSKGLFKRAIAQSGSIIRASSFSPNVLVSSMGTCMSLF-MQEFS-----GCPSNDSRAMAECFRKLPVERF---AASESEPC--KQ-KLLATAD 6 capte-r7u1x0 28.9% GGDPNQVTIFGESAGAWSVSLHFVSHMSNGLFNRAILMSGSAVGMPQLSPS----AQPLQEAIK-LANAI-----GCPNATTEELTNCLLRKPAMEI---VNATTM----SM-EFNPVVD 7 capte-x2b306 29.7% GGDPSQVTISGESAGAWSVSMHLVSPCSAGLFQRAIMSSGSIVGMPQFST-----RRSLEDNAV-VATAL-----GCPNTTTDEIVSCLKTLPMRTI---AGYSVN----GMTIFWPVVD 8 capte-r7vei7 28.0% GGDPSRVTLAGQSAGAASVTFHLLSEESRGLFSQAVIHSDYTLKSSHPKS--------GKSAIQRLMHQLE----GC---EQKEIFECLREKSPEEIIEVFEVDFAGNDRNIARWTPVFD 9 capte-r7u3w8 26.1% GGDPDKVTLLGESAGAWCVSLQAISPRSKNLFKRAIVMSGLEYTRNLTTNR----FLEKENSIQALLDTV-----HCS--NASDVVKCLQGVDARQL---LMSKYW-------QQAPVVD 10 capte-r7uhi1 24.8% GGNPHKVTIFGQSAGGMSITLHMVSPKTRRLFQHAIAQSGAVTNQVLLERN----SPRWTPMLQQLASSV-----GCP--TDTNLVQCLQSVDNARL---AALDNM-------FYEPIVD consensus/100% GGsstpVTl.GpSAGuhshs..hhS..sttLFppAlh.Ss..h..s...................h.p.......th...p.p.hhphh.t.s..ph....................hhD consensus/90% GGsPspVTlhGpSAGuhSlshhhlS.hupsLFp+AIh.SG.hh..s.h.s........ht..h..hhpth.....GC...pspthhphlpphs..ph...................sshD consensus/80% GGsPspVTlhGpSAGuhSlohphlS.hopGLFp+AIhpSGshht.s.h.s........ht.slp.hhptl.....GCs..pspthhpCLpphsstph...h..p.........hhtsslD consensus/70% GGDPspVTIhGpSAGuhSlohHllSPhSpGLFpRAIhpSGshlt.s.h.s.......ttp.slp.hhpsl.....GCss.sspslhpCLpphsstph...h..ps.....t..hhpPllD 1 capte-r7tu45 100.0% NK----------VVASGNIEAFRPSSDIPLMVGCNNGEGALMVHLF--CG--------FKVPNDEVFNNVLRIMAAMGF---------------PSDVTDAILEEYKTEYF-EGDSEEDR 2 capte-r7uq81 34.3% GS--FLPAEPKALMTSKRINP------VPLLIGFNQCEGYDFMIPI--VGS-------EGLKSLARAREIIEFLVTKAF--------FRGLA-NSADVIQLLMKEYVLSL--GDATEDVV 3 capte-r7tuq9 27.8% GN--FVPDDPEKLFRAGEFNK-----DVDVMLGNAFTEGHLLATIV--LPNFD-----TEDFSLKAFKDLVSFELSTIVPQL------------PLYLRDAQF----------------- 4 capte-r7uxb2 23.9% GS--FFPDNIEKLVKTKQYNR-----DIDIILGTVQNEGYFLTSGK--APHLV-----SPDTSLQKVEEFIYGVLSKRYPHL------------PQKARRAHVQEAMETYV-RDPKPNGL 5 capte-x1yv75 26.1% GV--YLPDDPEKLLRTGQYNK-----DIDVIMGTMSTEGYWLSATR--IPPLV-----AEDTSLERVQGYFLHEITRRYPRL------------PLYVRQAAVAAAVVAYV-RDTRTNGL 6 capte-r7u1x0 28.9% NE--YFTDVPLALMEKGLFQK-----GVDLLAGFTFVEGFMLGQMF--FSHVD-----ITNLNYSSFRECVSIAYAAFMPGM--------------TINPALIDEALKVYIKDSESPEQM 7 capte-x2b306 29.7% NE--CFPDTPLNMMKQGNFHT-----KVDVMAGFTYVEGFMFAHLF--FPHVD-----FGNLNMSVFRQVYS----------------------------------------SLRETQLM 8 capte-r7vei7 28.0% GV--NLALDPTQELLMLNFTQ------VPVLIGVTANEGWGLSTYL--LPEAM-----QDNTTLTYSGHFLS--ATRKFLSDVYGADEPYFE----EILSAVLDFNFGKSPKMLEDEGFL 9 capte-r7u3w8 26.1% GEGGFLPMQPKELWESGNLNM------DSLLGGTVRHDGEVVVRLLKEVVHLD----FVNGISIEQVRKYVDDLLIWFDTSL----DQRGFSENDVKLKNIIVDQYIG----DPSDQLSN 10 capte-r7uhi1 24.8% GPGGCVPMQPALAWNTS-------VRHAPFLMGVVKDEGMAIFDMN--LPGIDKELALRDGIDFNVAMKITTMMLMKLYPGP----DQPFTSLFTPEQMQFVLQYYYK----HPEDSFDN consensus/100% s............h..............shhhG....-G..h......hs............s.t...thh................................................. consensus/90% s....hs.....hhttt.hp.......hslhhGhs.sEGhhh.thh..hs.........tshshp.htphh...h.hh......................h.h............p.... consensus/80% s...hhs.pP.thhpptphp.......lslhhGhs.sEGhhhsphh..hsth.......tshshphhpphhp..h.hhh..................hhphhht..h.....t.tp.... consensus/70% Gp..hhP.pPttlhpsuphpt.....tlsllhGsstsEGahlsphh..hsphs.....hsshshphhpchlph.hsthh.t.............s.plhphhlp.hhh....pspppt.h 1 capte-r7tu45 100.0% LRGLTELIGDFVFVYPSMSAAEKYCE---GSNTYLYYLDIT--PSY--SPYPEW-VGADHAADVSFVQGH-MLFDYNH--LPSWTFNDEEAELAKVMMKYWANFAKTGNP---NGSGL-S 2 capte-r7uq81 34.3% MEALVHLYGDLLFVAPSLLQAELQSD-V--SPTYVYEFAHR--LSV--STTPSW-CLSKHGEEIPFVFGE-PFLDR----FPDGIWSEDEKRLSRLIMASWAAFAKHGDP---NNNFLPA 3 capte-r7tuq9 27.8% ----------------------------SHASTYFYELRHR--PSL--SNRPEY-VGADHGDDLLLMQGL-HITGEIGQ-SRVES-TADDRATAKAMFEAWSNFARNGDP---NGIGTVP 4 capte-r7uxb2 23.9% IEAATQFMGDSLILWPTYAFALGLAD-TMKGNTFFYELRHR--PSI--SRRPYF-IGPDHCDDLPMMLGS-QFTGKLGL-FPVEL-SEEDKTVADFMFNAWSNFAIHGNP---NSQGS-P 5 capte-x1yv75 26.1% IKAATEFFGDSFLLWPTYATALDFSK-TLEGKTYFYQIRHR--PSI--SNHPDF-IGSDHCDDLVLMLGT-QFTNGFGV-IPLTI-SDEDRIVADAIFNAWSNFAIHGNP---NSEGL-A 6 capte-r7u1x0 28.9% TYALTKLVGDCIITQATYNTALKAME-FGHQKVYLYDFHGR--PFY--SNKPEG-ILADHGDDIIFAFGFSEATKSYGLEYPEDN-LEEGQRIEDAMMQYFTSFAETGVP---SGDGL-P 7 capte-x2b306 29.7% HLSIQRLRHSFCQPLSAWADRHGQTE-YGKQKVYLYEFNGR--PFY--SSKPDF-IRADHTDDLTAVYGFSQMSEVFGFQIPADR-LEENRLTEDVFMQYLASFAATGVP---SGEGL-P 8 capte-r7vei7 28.0% LRRWSDLVGDLYLRSPTTRLAQLLTA--SSQLTFFYEFSHR--PSHIRSERPLWHHGCDHTSELQFFWGF-PYLNSHSR-CNTLY-TAEEMSFTKDVMAYYANFIKSGNP---NSEDL-F 9 capte-r7u3w8 26.1% LLATIELFTDSVFVAETRNALDRIRD--LGRQGYLYYHTHKGLLSP--SGYPIE-VGPFHAEGIHYLFGI-YADEELAM-YNAS--ALETNAVASALMHSFATFADTGSPVFTNLSGAEH 10 capte-r7uhi1 24.8% LRSLMSFVRDALFVSQTQQAAGSLQQPTSRNDTFLYQFVYRD-ASY--PEEPFP-MGPSHAGELKYMFEE---------------CSTSEKNLCNSIIHAWATFAKTGRPSFLNHDGDDV consensus/100% ..............................t.sahY.h.hp.......s..P...hhs.Hsttl.hh.t...................pt..htp.hht.hssFh.pG.P...s...... consensus/90% h.th.phhts.h....s...h....t...tt.sahY.hth+....h..SthP...hhspHst-l.hh.G...h.t............t-pt.htp.hht.ausFA.pGsP...stps... consensus/80% h.uh.phhtD.hhh..oht.t...tp...ttpsahYphptR..sSh..SppP.h.htscHss-l.hhhG...h.t..t..hs....st-ppthscshhphausFAtpGsP...NspGh.s consensus/70% hhuhhchhsD.hhh.sohttA.thpc...pppTYhYphpaR..PSh..SscP.a.lGsDHs--l.hhhGh..hhpthu..hsst..spE-ptlscshhphausFAcsGsP...NupGh.s 1 capte-r7tu45 100.0% QWRCYCTAERNHLILKHGI---VQGDNLKERRIKFWKYIISKYNGFIVQ----------------------------------------------- 2 capte-r7uq81 34.3% QWSKF-EQEKSYCHLTASP---SVLTDRQSRRMDFWNNVIP------------------------------------------------------- 3 capte-r7tuq9 27.8% SWPMFDTENSPYMVFQSEP---HVELHYKAERIKLWSETLPALAKSTIKDTVVG------------------------------------------ 4 capte-r7uxb2 23.9% TWPQFDSGSGQYMVFDVES---HVEVNFQHDRVNFWKNTLPRLSNASIRG-------------PAFRNDAAEKRDEL------------------- 5 capte-x1yv75 26.1% QWPQFDSVHQQFMVFDVES---HAEMNFQSTRMNFWTHTLPQLAKSKVADIIRGIFQIDNILLLDYNTYTYKTKYDLSQG---------------L 6 capte-r7u1x0 28.9% KWPEL-REENSYMQIGPVL---EVKQNYQAEHMNYWLETFPALQAEAAEN-----------------------HDEL------------------- 7 capte-x2b306 29.7% HWPEL-RENGSYMRVDAVP---ELRHNYQPEQMKFWLETV-------------------------------------------------------- 8 capte-r7vei7 28.0% LWPEFSRSREDYIIMQPSF---MKASGYKQDRVNFYMGKLLHMRNKCKGH---------------------ETHDEL------------------- 9 capte-r7u3w8 26.1% DWPAY-NENDEYLEFESNLSPASIQRRLLPRAVSFWNSILPQLQQCGMQKENSAPVEV-------------NVATDLHHTSVQIVLILCSVMTVVF 10 capte-r7uhi1 24.8% TWLPYSEESKHFLKIDLNMGSDSMQQDLLPEVNHFWNDVIPGMIDKFPCDTGST----------ARRRSACRARTKLTP----------------- consensus/100% .W..h.p.pt.ah.ht..........th..p..pha..hh........................................................ consensus/90% pW..h.ptptpah.hp.......ht.ph..cthpaW.thl........................................................ consensus/80% pWsta.ptpppahhhpst....pht.shp.cphpFW.phlsth.t...t............................................... consensus/70% pWPpa.pppppYhhhpss....phppshpsc+hpFWppslPthttthhtt.............................................. |
MView 1.56, Copyright © 1997-2013 Nigel P. Brown
#protein: highlight amino acid physicochemical properties
hydrophobic => bright-green { A, G, I, L, M, P, V }
large hydrophobic => dark-green { F, H, W, Y }
cystein => yellow { C }
negative charge => bright-blue { D, E }
positive charge => bright-red { K, R }
polar => purple { N, Q }
small alcohol => dull-blue { S , T }
any => dark-gray { X }
#protein consensus: report conserved physicochemical classes, derived from the Venn diagrams of Taylor W. R. (1986).
# The classification of amino acid conservation.
#J. Theor. Biol. 119:205-218.
alcohol => o { S, T }
aliphatic => l { I, L, V }
aromatic => a { F, H, W, Y }
charged => c { D, E, H, K, R }
hydrophobic => h { A, C, F, G, H, I, K, L, M, R, T, V, W, Y }
negative => - { D, E }
polar => p { C, D, E, H, K, N, Q, R, S, T }
positive => + { H, K, R }
small => s { A, C, D, G, N, P, S, T, V }
tiny => u { A, G, S }
turnlike => t { A, C, D, E, G, H, K, N, Q, R, S, T }