Reference sequence (1): 9bact-estC55.102 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 9bact-estC55.102 100.0% -------SRFLTRFNPLPVATETLQIPVLVTVPNAA--------SALGGVKPAGGWPVLIFQHGITRNRTDMLGVAEAFADAGF-------VVVAIDQPLHGIT---------------- 2 aerhy-LIP 17.8% ------------------------------------------------------------------------------------------------------------------------ 3 aerhy-lipe 12.1% --------------------------------------------------VPSQPVRHRQCAEGVTRSDRRAGGGGRGSGPAGD-------ADCRSDPPERAAGRGEQADWG-------- 4 aerhy-Q44055 11.7% ------------------------------------------------------------CAEGVTVSDRRPGGRRCGSGLAWG-------TDCRSDSPDRAAGGGEQAHRG-------- 5 aerhy-PLA 26.5% -GKPLDAEQNIGRFNPLPMLEEVQSVPMRVFAKDAL----------------NTITDVIIYQHGVTSVKENAYALALGQIYAGMQAGKK-VALVVIDHPLHG------------------ 6 vibch-VCA0863 21.6% --------------------KSVQDVPFLLFTPAG-----------------AAPTDIVIYQHGVTTAKENAYAFAKNLTAVGL-------AVIAIDLPLHG------------------ 7 vibpa-VPA0859 21.9% -----DSERVITRYSPVPEVKSLENVEFLLFTPQN-----------------GVAKDVVIYQHGITSAKENAYAFAFNMVQTGV-------AVIAIDLPIHG------------------ 8 vibvu-VV20248 21.6% DGTQLDADRILTRYSAVPQIRAVKEVPFIMFVPKGA---------------GADNVPLLQYQHGITNLKESAYALALSHISTAIQTGKTPYALIAIDQPLHG------------------ 9 sheon-SO2934 26.4% DGTAVDKTKHLTKFNPIPAVKGYETVSVLISMPNATKLAAFYQQQGLTFTPPTSGWPTTIALHGLGGGKEMSLAYAGSYAAMGV-------ATVAIDMPLHG------------------ 10 9zzzz-a0a0g3fe15 21.2% ---------------PFPIKTQDVTVPVMVLYPAGYD--------------GSTPLETFIYMHGITTDRSAALTFGSALAANAN------VAVVAIDQPLHGVTPFSLADQQSLALQLLV consensus/100% ........................................................................................................................ consensus/90% ............................................................h.cGls..cp..hsht.s.h..h........s.hh.D.P.+u.................. consensus/80% ....................................................s..h.hh.h.cGlTtscptshuhu.s.h.su........s.ht.D.P.+u.................. consensus/70% ....................pt..pl.hhh.h.ts.................sssh.hh.htHGlTss+cpuhuhuhu.s.suh.......AslsID.PlHG.................. 1 9bact-estC55.102 100.0% ---------------------------------------------------DPTNPLYAAN----PAAPTGS----------------------I--ERTFDLD---------------- 2 aerhy-LIP 17.8% ------------------------------------------------------------------------------------------------------------------------ 3 aerhy-lipe 12.1% --------------------------DAHLRRQAAGRRAEHWSLQ--------------------PAADAGRGAIRADACLRQGCPQHHHGCHHLSARRDLGQR-----ERLR------- 4 aerhy-Q44055 11.7% --------------------------DPHLGRQGAGSRAEYRPLQ--------------------PAAGAGRGAIRADAHLCRRRAVCHHRCDHLSAWRHLGEG-----ERLC------- 5 aerhy-PLA 26.5% -------------------------------------------------------------------------------------------------ERGFAL----------------- 6 vibch-VCA0863 21.6% -------------------------------------------------------------------------------------------------ERSLDS----------------- 7 vibpa-VPA0859 21.9% -------------------------------------------------------------------------------------------------TRSLDE----------------- 8 vibvu-VV20248 21.6% -------------------------------------------------------------------------------------------------QRALSDG---------------- 9 sheon-SO2934 26.4% -------------------------------------------------------------------------------------------------ARSFDANGDGIY----------- 10 9zzzz-a0a0g3fe15 21.2% AGGVIPAPELDANEDPIITPTAQGTIDAVIAKQLSVQTVTAIALGLAPFDASPDTPCAAAQFNGMPDGSGGT----------------------VSGVRTFDEAAQNVIAGQCDATIIGA consensus/100% ........................................................................................................................ consensus/90% ..................................................................................................Rths.................. consensus/80% ..................................................................................................Rshs.................. consensus/70% .................................................................................................tRshst................. 1 9bact-estC55.102 100.0% --------------LVDNQ--------------------------TGTPG----PDGVRDPSGTHFINLASLLTSRDNLRQAAADLMTLARSLPNLNL----DTDPGGDID---PTRIHF 2 aerhy-LIP 17.8% ---------------------------------------------TGSMD-----SVTTSDNPTPYLNLSYLTVARDNLKQSVAICWACVWQWGWPMP------RAIGTAG---SLKVHF 3 aerhy-lipe 12.1% ---PGAGP------DLEDLCRHAGGQEGGAGGDRSSAARRAWLRLSGSMD-----TVTTSDNPTPYLNLSYLTVARDNLKQSVAICWACVWRLAWPTP------RAIGTAG---SLKVHF 4 aerhy-Q44055 11.7% ---PGAGP------DRCRCSKHH-GQECRRGGDRSPAARGAWFRLSGSMD----GDRTTSENPTPYLNLSYLTVARVNLKQSVAICWACVWRWGWPTP------RAIGTAG---SLKVHF 5 aerhy-PLA 26.5% ---------------------------------------------SGSMA-----TVTTSDNPTPYLNLSYLTVARDNLKQSVADLLGLRLAVGLANA-----KGAIGTAG---SLKVHF 6 vibch-VCA0863 21.6% -------------------------------------------------------TRSANSDPLAYINLTYLAVARDNLRQSILDVLGLRAALTLSQP--LFTGTRLSGINVGTGSKVRM 7 vibpa-VPA0859 21.9% -------------------------------------------------------QRSANANVLAYLNLSNLAVARDNLRQSVLDVLGLRASLVVSAQGGLLAGGPLQGFNPMTGSQVKM 8 vibvu-VV20248 21.6% -------------------------------------------------------TVTTPQTPTVFMNLEYLPVARDNIRQGAIDGLGLRYALNYVNP----TEVAFQTVN---QSDVSL 9 sheon-SO2934 26.4% ---------------------------------EVSATDPSFGEVIGTP------DAFKNGNPLVFVNISSTLSVRDNFRQATMDHLGVRLALSGLAQG-LAQASKPQIFD---VTKISA 10 9zzzz-a0a0g3fe15 21.2% GGEPVAAPAVIGAISIENTVANAGSTVPGL---ARTANERHFGFTAGAANQPVPMTATSGASGSLFINLTNFTNSRDKNRQAVLDLLNLRESLAGFDF----AAGTGADLD---ASNVYF consensus/100% .......................................................ph.ts.ss..ahNlt.h.ssRsp.+Quhh.hhshh.ths.............t.hs.....pl.h consensus/90% .......................................................shststssh.alNLs.hhsuRDNh+Qush.hhshhhthsh.t.......t.htshs...s.plph consensus/80% .......................................................shossssshsalNLo.LssuRDNl+Qush.hhuhhhtlsh.s.......tshtshs...s.cVph consensus/70% ..............................................Gs.......ssossssPosalNLo.LsVARDNL+QulhDhhulthuLshss......tsshushs...u.+V+h 1 9bact-estC55.102 100.0% LGHSLGGIVGTVWLGT--------VSGDEV------RTATLAMAGGGVAQLLRDSPSFGPRIIAGLQAQGLQPG---------------------------------------TTLFEQF 2 aerhy-LIP 17.8% LGHSLGASRGPTCWRWPTSLLAT-RRRRPVQ-----VRHWRPGHAGRHSAAVAELAAFGPTIQMSVLTAGSAAL---KAAFTAYAPNCKTAST-DLLRQRVPAEPGCGHPGHGGQHPAEL 3 aerhy-lipe 12.1% LGHSLGASRVPTCCGRQPDHRQR-ASGCPVQ-----VRYRWPGHAGSHSAAAAELADFGPTIKMGVLTSGSAEL---KAGFTAYAPNCTDGGA-YLLRQRVPAEPGRGHSATAATRCRVQ 4 aerhy-Q44055 11.7% LGHSLGASLGPTCCGRKPVCWQS-PGGCPVQ-----VHHGWPGHAGRHSAAAAELTDFGPTIKMGVLIGGSPEL---KTALTAYAPNCTDRGG-ELLHQRVPPEPGRYHPASAAGRFRVM 5 aerhy-PLA 26.5% LGHSLGAISGTNLLAVANQPIGN-AQADAL---FKFDTGGLAMPGGGIAPLLLNSPTFGPTIKMGVLTSGSAEL---KAGFTAYAPNCKTAVP-TCFVNEFLPSLSTTQQAAAASTLQSY 6 vibch-VCA0863 21.6% LGHSLGGIVGTSAIAESNKTLGS-TAADAM---YSFSGAAIQNSGGQISNLLLGSAFFGPKIKHNVALSASTEY---KGFADA---QCASLDD-SACYNLFTSLATQEQLAQVTSGFQMF 7 vibpa-VPA0859 21.9% LGHSLGGIVGTSAVAAANNTLGS-PTADAL---YTFSAASIQNSGGQIGNLLLGSSDFGPQIKHNLAYAASTDY---KSYADA---QCAQLDD-KACYEVFEGLATPEQLAALSAGFSQF 8 vibvu-VV20248 21.6% IGHSIGGITGISSYAVANTSV-N-PVIDPM---FAYKTATLANLGGGIAPFLFESGSFSPIIKHSITAAAVPSY------LNYYANTCPTKDNPGTCFNNFYSAADAEAKSQIDSALTSF 9 sheon-SO2934 26.4% QGLSLGGIVGTDFATYASTGMKNPSTGEALPNPYAINAASLVAPAGGLAGSFAGSATFGPVLFNNVTASATFKALVDKANTAGYEPGS--------------PEYAALVQAVYAQFIPTF 10 9zzzz-a0a0g3fe15 21.2% AGHSLGTIVGAPFVAVAN------TSTDAS---DDIVATQLLTPGAGIVRLLENSPAFAPQILGGLQAAAGLEQ--------------------------------------GDANLETF consensus/100% .GhSlGs..s.s.ht...........hp.........th.h...uuths..h.t.s.FuP.l..sl.htu...........................................st..... consensus/90% hGHSLGu.hGsshhsh.s......sttpsh.......ttth...uGthu.hhht.ssFuP.Ihhsl.huus.th......................................hsthht.h consensus/80% lGHSLGu.hGsshhuhts..h.p.ssscsh......sttth.s.uGthushhht.ssFGPpIhhslhhuus.ph......hsh...ts..............s..s....u.hssthp.h consensus/70% LGHSLGuIsGsshhuhssp.hts.ssu-sl......sssslss.uGtlushlhpSssFGPpIphulhsuuosch...Ks.hsu...pC.phss..hhhp.h.s..st.t.uthssthppa 1 9bact-estC55.102 100.0% FRDAQTVVDAGDPVNFIASAASA----RPIHLLQVIGDGASSPPDQVVPN------------------------SATQRLVDAAGLTRIAAPAAPGPVVETNG----------------- 2 aerhy-LIP 17.8% QLRAQSVLDSADPINLGSGIRG-----LPAVCHRNRRRGALSLSDRVIPNSIAT---------APP--------GWHRAAVQGPG-----------PATADRH----------------- 3 aerhy-lipe 12.1% LCG---------------------------------------------------------------------------------------------PVGAGFG----------------- 4 aerhy-Q44055 11.7% FYG---------------------------------------------------------------------------------------------PVRAGFG----------------- 5 aerhy-PLA 26.5% SFAAQSVLDSADPINLGRGIQSS----FPLFATEIVGDGALSLSDQVIPNSIAS---------APL--------GGTEPLFKVLALQ---------PLTATGA----------------- 6 vibch-VCA0863 21.6% SYAAQTLLDTIDPYSVVSTKLNNGGLTTPLYFSEVDG-------DSVVPNKVSNPTGSLVYLSPQF--------AGTEPLATLLGLT---------TVNAGQT----------------- 7 vibpa-VPA0859 21.9% IYAAQTTLDTVDPFTNAADLVASGTLTTPFLMTEVEG-------DKTVPNNVAN---------APF--------AGTEPLAKKLGLT---------EVNSLNT----------------- 8 vibvu-VV20248 21.6% TYAAQTVLDNVDPFNMASQVSGS------LLGIQSNG-------DATIPNKVSK---------IPT--------AGTEPLFKKLGLVN----------TATNA----------------- 9 sheon-SO2934 26.4% AFAVQTAVDSADPINHAAMLKAT---KLPVHLIEVAGDGNGNLPDQVLPNRVDN---------FPL--------SGTEPLISAMGLP---------CVDATTK----------------- 10 9zzzz-a0a0g3fe15 21.2% FNVFQAALDSADPINFADSLNES---SSKVLLSHVNG-------DQVIPNDALT---------NPLGNAFEAYLSGTEPFAALLNAT---------SVTNSNEVDLGITTGPLTGVDGVP consensus/100% ...................................................................................................t..t................. consensus/90% .hs..............................................................................................hsss.t................. consensus/80% .hshQshlDshDPhs.ht.h.t.......hhh.p..t.......DtslPN........................uhpp.hhth.s...........slsustt................. consensus/70% hhusQoslDssDPhshssth.ss......hhh.ps.G.......DpslPNph.p....................uuTcshhphhuh..........sVsAsps................. 1 9bact-estC55.102 100.0% -SPPGHRVYVNF-TAGGHGSILDPSAS-------LETTVEMQTQAVSFAAGSPPMLASGTVIVVGNPTVIQP---- 2 aerhy-LIP 17.8% -GPPTTERPVSW-----------PG---------VTARCWHRTRTSIRPAPSPPR-CRPSSAASSQAAVPRS---R 3 aerhy-lipe 12.1% ---------------------------------------------------------------------------- 4 aerhy-Q44055 11.7% ---------------------------------------------------------------------------- 5 aerhy-PLA 26.5% -ASHNAARFV----AGGHSSLLAPDENFDPS---GDVTTEMQSQFASFFMSGG------TAVKVTNGSLLKQ---- 6 vibch-VCA0863 21.6% -APNATKSFVQFNSTAKHSTFVAPQDAGYAD---LAHHTEMQTETADFLADDS------LGAVSNSNSVLK----- 7 vibpa-VPA0859 21.9% -AVAATSSFVQFNAIASHSTFASPS-GTLAD---VNHHAEMQKENADFLMDNA------LSDV-SDTTVLK----- 8 vibvu-VV20248 21.6% -SGSRVASYFDSSSNAAHSTVIAPETD--EE---ALAHSEMSSQIVQFTLTKGN--SDGLLAV--DAAFLDASK-- 9 sheon-SO2934 26.4% --GTGAVRFA----KGHHSSIVDPSEKSSTDGMAGAATVEMQTQVATYASTAGK--GEATIFV-TDPSVIATCP-N 10 9zzzz-a0a0g3fe15 21.2% LADAAITRYL----EGTHGTPVLPQ-GGALD---ERVFAEMVRQTATVNGTGGG--AVILNFMEQDPDITEIVQQD consensus/100% ............................................................................ consensus/90% ............................................................................ consensus/80% ..s.th...h.............Pt...........hhs.h.pp.s.h..sts.........h..pssh.t..... consensus/70% .ussshtpah.....utHuo.h.Pp.t.......hthpsEMppphsph.hsss......h.hh.tssslhp..... |
MView 1.56, Copyright © 1997-2013 Nigel P. Brown
#protein: highlight amino acid physicochemical properties
hydrophobic => bright-green { A, G, I, L, M, P, V }
large hydrophobic => dark-green { F, H, W, Y }
cystein => yellow { C }
negative charge => bright-blue { D, E }
positive charge => bright-red { K, R }
polar => purple { N, Q }
small alcohol => dull-blue { S , T }
any => dark-gray { X }
#protein consensus: report conserved physicochemical classes, derived from the Venn diagrams of Taylor W. R. (1986).
# The classification of amino acid conservation.
#J. Theor. Biol. 119:205-218.
alcohol => o { S, T }
aliphatic => l { I, L, V }
aromatic => a { F, H, W, Y }
charged => c { D, E, H, K, R }
hydrophobic => h { A, C, F, G, H, I, K, L, M, R, T, V, W, Y }
negative => - { D, E }
polar => p { C, D, E, H, K, N, Q, R, S, T }
positive => + { H, K, R }
small => s { A, C, D, G, N, P, S, T, V }
tiny => u { A, G, S }
turnlike => t { A, C, D, E, G, H, K, N, Q, R, S, T }