Reference sequence (1): 9bact-d8pbw6 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 9bact-d8pbw6 100.0% ------------------------------------------------VVLAPGYGESKRDYVPLAYYLAGNGFHVVRFDNVNHVGESDGLVTQFRLEDMETDLETVLDYVAAQWPGRSI 2 9bact-d8pdl3 34.8% -------------------------------HDVPT---RTDSTQYPLVLLCPGYGTTQQAYVALAYTLAACGLQILRYDHSRHIGLSDGDPTQTTLTSLEDDLDTVLSFAQKEFPGIPL 3 corad-d5ene2 25.4% MAVSTQIRGKLSIQSEVVVFPSRNGKRLVGFIDRQQ----ECGDDGDWVILTPKFGESKKNSLQVAYQLAANGLRVLRFDHSNHIGESAGSIVDYSFSDAIADIQGAYDYLEAAFGSPRA 4 9delt-a6g1j0 23.8% M------------STEESVLRLEDGRQIVIWHSRPQ---SEEPVR-GTVLLAPGFCARMYSLAAMAAYLCANGFAVYRYDPLDHRGPSSGELADFTMTTGRYSMDQVLDWLARERGVESL 5 9gamm-q4a538 22.8% ----------------------------------------------------------MDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGDINEFSMSIGKDSLLTVIDWLK-GRNIEKL 6 shewm-luxd 19.4% M------TNEDTFSTIDHAINLETGKTIRVWETFPK---DNSLVKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGNINEFSMTIGKKSLLTVIEWLK-RRNINKF 7 sheha-LUXD 19.2% M------ECSNSCLTIDHVIQLDDDKEIRVWETLPK---DNTAVRNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGDINEFTMSIGKDSLLIVIEWLK-GRGVNKL 8 vibfi-LUXD 20.5% M------KDESAFFTIDHIIKLDNGQSIRVWETLPK---KNVPEKKHTILIASGFARRMDHFAGLAEYLSTNGFHVIRYDSLHHVGLSSGCINEFTMSIGKNSLLTVVDWLT-DHGVERI 9 vibf1-q5dz04 19.6% M------KDESSFFTIDHIIELENGQSIRVWETPPK---SDTHKKNSTIVIAAGFARRMDHFAGLAEYLSSNGFRVIRYDSLHHVGLSSGQIDEFSMSIGKHSLLIVVGWLR-AKGIQNL 10 phole-lxd1 20.9% M------ENTQHSLPIDHVIDIGDNRYIRVWETKPK---NKETKRNNTIVIASGFARRMDHFAGLAEYLANNGFRVIRYDSLNHVGLSSGEIKQFSMSVGKHSLLTVIDWLK-ERNINNI 11 phole-lxd2 21.6% M------KNTQTSAPIDHMISLGDNRHIRVWETLPK---NQEIKRNNTIVIAAGFARRMDHFAGLAEYLANNGFHVIRYDSLNHVGLSSGEINQFSMSVGKHSLLTVIEWLK-GRGIDQI 12 phopo-luxd 21.9% M------KSENNSVPIDHVIKVDNERHIRVWETFPK---NQCDKRNNTIVIASGFARRMDHFAGLAEYLSTNGFHVIRYDSLNHVGLSSGEIDQFSMSVGKKSLLTVIDWLKSEHGIDQV 13 vibcl-q5ek34 19.2% --------------TIDHVISLSGNQQIHVWETPPTLKFNSMPTRRNSILIASGFARRMDHFAGLARYLSANGFHVYRYDSLHHVGLSSGTIDQYTMSIGKQSLEIVMAWLH-NRGVTDI 14 vibha-1luxd 19.7% M--------NNQCKTIAHVLRVNNGQELHVWETPPK---ENVPFKNNTILIASGFARRMDHFAGLAEYLSENGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQ-TKGTQNI 15 pholu-LUXD2 18.6% M------ENKSKYKTIDHVLCVEGNKKIHVWETLPE---ETSPKRKNPIIIASGFARRMDHFAGLAEYLSRNGFHVIRYDSLHHVGLSSGTIDEFTMSIGKQSLLAVVDWLN-TRKINNR 16 pholu-lxd1 19.2% M------ENESKYKTIDHVICVEGNKKIHVWETLPE---ENSPKRKNAIIIASGFARRMDHFAGLAEYLSRNGFHVIRYDSLHHVGLSSGTIDEFTMSIGKQSLLAVVDWLT-TRKINNF 17 pholu-lxd2 19.2% M------ENKSRYKTIDHVICVEENRKIHVWETLPK---ENSPKRKNTLIIASGFARRMDHFAGLAEYLSQNGFHVIRYDSLHHVGLSSGTIDEFTMSIGKQSLLAVVDWLN-TRKINNL consensus/100% ............................................................t.h.hA..LstsGhtlhRaD..pHhG.SsG...phphp.h..sh..shtaht.th....h consensus/90% ................................................lllsstastphpphsslA.hLutNGhpVhRaDp.pHlG.SsGplspaoho.hctsl.hVhtalt.th.h.ph consensus/80% ..............s...hh..tttp.lhhacs.Pp...pp...c.s.lllAsGFucpMccaAuLAtYLutNGF+VlRYDsLpHVGLSSGpIspFoMohG+pSL.tVlcWLp.t+shpph consensus/70% M........p.t..sI-HllplpssppI+VWEThPp...pppsh+pssllIAuGFARRMDHFAGLAEYLusNGFHVlRYDSLcHVGLSSGpIspFoMSlGKpSLhsVl-WLp.p+slppl 1 9bact-d8pbw6 100.0% GLVATSLAGRVALKVAGRVPHLGLLALINGIMDVQHTLQAVHQEDLIGEHLAGARKGVVNILGLTIDADRWLEHAVQGGYADLRSTEQDAERLHAPVVLFHAEQDAWVDPSSIEAVGAAM 2 9bact-d8pdl3 34.8% TVLAPDLLGRIVLRRQDWHRRVNRLLLLNPALDIRNCLTSLHQRDLVGEHLAGTRLGLGNLMGIPLDIDHFVADAVTGRYTENTALQEDLSHCGTDVVFLT------------------- 3 corad-d5ene2 25.4% QLVANSLSGRCALRVAAIDPRVTRLVLMVGVVNFRQTATEVYQRDMVAEYQQGQLQGVSDILGHQVNVDAFLKDCIEQDMHDLGGSLQDVKRLNCEVFLFCAEQDVWVEMNDIVQLRDA- 4 9delt-a6g1j0 23.8% GVIATSLSARIAYRVASERDNVAYLVTAVGVTHLRATLERVFGVDHMASPPEQLPETVVFEERHHIRTLGFATDAHELGWNPAETTRAELDRASVPIVAFIARDDDWVLESEVEEALDLA 5 9gamm-q4a538 22.8% GLIAASLSARIAYEIANEI-DLSFLVTAVGVVNLRDTLERALKYDYLQLPIEKLPEDL-DFEGHNLGSEVFVTDCFKHKWDTLDSTINKMKNLDVPFIAFTANDDNWVKQSEVLDLLISL 6 shewm-luxd 19.4% GLIAASLSARIAYDVANEI-DLSFLVTAVGVVNLRDTLERALKYDYLQLPIEELPEDL-DFEGHNLGSEIFVTDCFKHQWDTFNSTKNKMKDLNIPFIAFTANDDSWVKQNEVLELIESL 7 sheha-LUXD 19.2% GLIAASLSARIAYEISNDV-DLSFLVTAVGVVNLRDTLERSLKYDYLQLEIEDLPEDL-DFEGHNLGSKVFVRDCFKHNWVTLDSTKNKMKNLDIPFIAFTANDDDWVKKAEVLEMMNSI 8 vibfi-LUXD 20.5% GLIAASLSARIAYEVVNKI-KLSFLITAVGVVNLRDTLEKALEYDYLQLPISELPEDL-DFEGHNLGSEVFVTDCFKHNWDTLDSTLNSVKGLAIPFIAFTANDDSWVKQSEVIELIDSI 9 vibf1-q5dz04 19.6% GIIAASLSARIAYEVINDI-DASFLITAVGVVNLQDTLEKALKYDYLRLPIDELPDDL-DFEGHNLGSKVFVTDCLKNEWDTLGSTFKAVQGLNIPFIAFTANGDSWVNQSDVEKMIDNI 10 phole-lxd1 20.9% GLIASSLSARIAYEVAAEI-DLSFLITAVGVVNLRSTLEKALKYDYLQMEVNTIPEDL-IFEGHNLGSKVFVTDCFENNWDSLDSTINKICELDIPFIAFTSDGDDWVCQHEVKHLVSNV 11 phole-lxd2 21.6% GLIASSLSARIAYDVAAEI-NLSFLITAVGVVNLRSTLEKALKYDYLQMEINDIPEDL-DFEGYNLGSKVFVTDCFDNNWDSLDSTINKTKDLDIPFIAFISNGDDWVCQQEVKKLVGNM 12 phopo-luxd 21.9% GLIASSLSARIAYDIVADV-NLSFLITAVGVVNLRNTLEQALKYDYLQMEIDEIPEDL-DFDGYNLGSKVFVTDCFENNWDTLDSTINKTKNLNVPFIAFVANDDSWVQQHEVEELMSNI 13 vibcl-q5ek34 19.2% GVIAASLSARIAYASVNEL-DLSFLITAVGVVNLRDTLEKALGFDYLSLPIQALPNDL-DFEGHKLGAEVFVRDCFANHWDSFSSTVEQIRHLSIPFIAFTANGDDWVKQDEVIEMLSHI 14 vibha-1luxd 19.7% GLIAASLSARVAYEVISDL-ELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDL-DFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHI 15 pholu-LUXD2 18.6% GILASSLSARIVYASLSEI-NVSFLITAVGVVNLRYTLERALGFDYLSLPINELPNNL-DFEGHKLGAEVFARDCLDFGWEDLTSTINSMMYLDIPFIAFTANNDNWVKQDEVITLLSNI 16 pholu-lxd1 19.2% GMLASSLSARIAYASLSEI-NASFLITAVGFVNLRYSLERALGFDYLSLPINELPNNL-DFEGHKLGAEVFARDCLDFGWEDLASTINNMMYLDIPFIAFTANNDNWVKQDEVITLLSNI 17 pholu-lxd2 19.2% GMLASSLSARIAYASLSEI-NVSFLITAVGVVNLRYTLERALGFDYLSLPIDELPDNL-DFEGHKLGAEVFARDCFDSGWEDLTSTINSMMHLDIPFIAFTANNDDWVKQDEVITLLSSI consensus/100% thlAssL.uRhsht..s...phshLhhhsshhphp.shpt.ht.Dhht...tt...sl....th.lt..hahtcsht.th...ts..tth..hth.hhhhh................... consensus/90% shlAsSLuuRlsht..s.h.phshLlhhsGhhslp.oLppshthDhlt...tth.psl..h.GhplsschFhpDshp.tatshtuo.pph..hshshlhFhuptDsWV..tpl.thh... consensus/80% GllAsSLSARIAYt.hscl.ploaLlTAVGVVNLRtTLEcshthDalt..lptlPpsL.sh-GapLsucsFspDChcttWpshsSThpphttLslPhlAFsApsDsWVppp-V.phhsth consensus/70% GllAuSLSARIAYclhs-l.slSFLlTAVGVVNLRsTLE+ALtaDYLph.IpplPpsL.DFEGHpLGucVFlpDChcppW-sLsSThsphppLslPFIAFTANsDsWVpQsEVhphlssl 1 9bact-d8pbw6 100.0% GENLRHSYVVPGALHRLQESPRKARTVYRQI---ALCCQEELWPARSMA------RTVEPSHREIGVQNRAERERSKK------------------------------------------ 2 9bact-d8pdl3 34.8% ------------------------------------------------------------------------------------------------------------------------ 3 corad-d5ene2 25.4% -SDRVRLYRIPDAMHELRENPDAAQQANGAL---IYLCSRGVLPEGAAF------SVAHPLKRELMGQNKIERERLRAAAPLKGSENDFWQRYLEKYNVLESVGDFRDYLDLLGQCLGPI 4 9delt-a6g1j0 23.8% NHPERRMCKLEGSGHNLAKNPRIAQAMLRELTGAVMALETGGEWLRAGLPPSFPAIEREPTFEMLTAQVIAERRRSVR------------------------------------------ 5 9gamm-q4a538 22.8% NSEKCKLYSLIGSSHDLGENLVVLRNFYQSVTKAAIALDNDSLDLDVNM--------TEPRFEDITSVTVKERRLKNQ------IENESLE-LV-------------------------- 6 shewm-luxd 19.4% NPEKCQLYSLIGSSHDLGENLVVLRNFYQSVTKAAIALDKGSLNLDINI--------IEPKFEDITSVTVKERRLKHN------IES--LE-LA-------------------------- 7 sheha-LUXD 19.2% SSTKCKLYSLIGSSHDLGENLVVLRNFYQSVTKAAISLDNDSVDLNVEI--------FEPKFEELTSVTVQERRLKNK------IESEILE-LMN------------------------- 8 vibfi-LUXD 20.5% ESSNCKLYSLIGSSHDLGENLVVLRNFYQSVTKAALALDDGLLDLEIDI--------IEPRFEDVTSITVKERRLKNE------IENELLE-LA-------------------------- 9 vibf1-q5dz04 19.6% DTTQCKLYSLIGSSHDLGENLVVLRNFYESVTRAAVALDKGSLDLDIEI--------VEPGFEDLTSTTVKERRLRNK------IENELLE-LA-------------------------- 10 phole-lxd1 20.9% KSDKKKIYSLVGSSHDLGENLVVLRNFYQSMTKAAVSLDRQLVELVDEI--------IEPNFEDLTVITVNERRLKNK------IENEIINRLADR--VLASV----------------- 11 phole-lxd2 21.6% NSDKTKIYSLIGSSHDLGENLIVLRNFYQSVTRAAIRVDSEVIDLVDDI--------SEPNFEDLTIITVNERRLKNK------IAKRNVR----------------------------- 12 phopo-luxd 21.9% NSDKTKIYSLIGSSHDLGENLIVLRNFYQSITKAAIALDSNLVGLVSEI--------IEPQFEALTIATVNERRLKNK------IQSKSLA----------------------------- 13 vibcl-q5ek34 19.2% PRGQSKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIALDSNSFDINIPF--------VEPTFEQLTIATVNERRMKNQ------IETETMM-QA-------------------------- 14 vibha-1luxd 19.7% RTGHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIAMDGGSLEIDVDF--------IEPDFEQLTIATVNERRLKAE------IESRTPE-MA-------------------------- 15 pholu-LUXD2 18.6% RSNRCKIHSLLGSSHDLCVFLVVLRNFYQSVTKAAIAMDNDRLDIDVDI--------IEPSFEHLTIATVNERRMKIE------IENQAIS-LS-------------------------- 16 pholu-lxd1 19.2% RSNRCKIYSLLGSSHDLSENLVVLRNFYQSVTKAAIAMDNDHLDIDVDI--------TEPSFEHLTIATVNERRMRIE------IENQAIS-LS-------------------------- 17 pholu-lxd2 19.2% RSHQCKIYSLLGSSHDLGENLVVLRNFYQSVTKAAIAMDNGCLDIDVDI--------IEPSFEHLTIAAVNERRMKIE------IENQVIS-LS-------------------------- consensus/100% ........................................................................................................................ consensus/90% .....p.h.l.su.HpLt....hhpth.tth...hh.hptt.......h.........cP.hc.lh..sh.ERch..t.......................................... consensus/80% tptpp+lYsL.GSuH-LsEN.hlhRshYpulTtAAlsh-pt.h.l..th........hEPpFEplT..sltERRhp.p.......tp................................. consensus/70% pospsKlYSLlGSSHDLuENLlVLRNFYQSlT+AAluhDps.lslssph........hEPpFEcLT.hTVpERRh+tc......IEsp.hp............................. 1 9bact-d8pbw6 100.0% --------------- 2 9bact-d8pdl3 34.8% --------------- 3 corad-d5ene2 25.4% RAGQVYFDCGCGNGL 4 9delt-a6g1j0 23.8% --------------- 5 9gamm-q4a538 22.8% --------------- 6 shewm-luxd 19.4% --------------- 7 sheha-LUXD 19.2% --------------- 8 vibfi-LUXD 20.5% --------------- 9 vibf1-q5dz04 19.6% --------------- 10 phole-lxd1 20.9% --------------- 11 phole-lxd2 21.6% --------------- 12 phopo-luxd 21.9% --------------- 13 vibcl-q5ek34 19.2% --------------- 14 vibha-1luxd 19.7% --------------- 15 pholu-LUXD2 18.6% --------------- 16 pholu-lxd1 19.2% --------------- 17 pholu-lxd2 19.2% --------------- consensus/100% ............... consensus/90% ............... consensus/80% ............... consensus/70% ............... |
MView 1.56, Copyright © 1997-2013 Nigel P. Brown
#protein: highlight amino acid physicochemical properties
hydrophobic => bright-green { A, G, I, L, M, P, V }
large hydrophobic => dark-green { F, H, W, Y }
cystein => yellow { C }
negative charge => bright-blue { D, E }
positive charge => bright-red { K, R }
polar => purple { N, Q }
small alcohol => dull-blue { S , T }
any => dark-gray { X }
#protein consensus: report conserved physicochemical classes, derived from the Venn diagrams of Taylor W. R. (1986).
# The classification of amino acid conservation.
#J. Theor. Biol. 119:205-218.
alcohol => o { S, T }
aliphatic => l { I, L, V }
aromatic => a { F, H, W, Y }
charged => c { D, E, H, K, R }
hydrophobic => h { A, C, F, G, H, I, K, L, M, R, T, V, W, Y }
negative => - { D, E }
polar => p { C, D, E, H, K, N, Q, R, S, T }
positive => + { H, K, R }
small => s { A, C, D, G, N, P, S, T, V }
tiny => u { A, G, S }
turnlike => t { A, C, D, E, G, H, K, N, Q, R, S, T }