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HEADER HYDROLASE 12-APR-99 1QFM
TITLE PROLYL OLIGOPEPTIDASE FROM PORCINE MUSCLE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROLYL OLIGOPEPTIDASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: PROLYL ENDOPEPTIDASE, POST-PROLINE CLEAVING
COMPND 5 ENZYME;
COMPND 6 EC: 3.4.21.26;
COMPND 7 BIOLOGICAL_UNIT: MONOMER
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE;
SOURCE 3 TISSUE: MUSCLE;
SOURCE 4 CELLULAR_LOCATION: CYTOPLASM;
SOURCE 5 OTHER_DETAILS: PORCINE BRAIN SEQUENCE WAS USED FOR
SOURCE 6 STRUCTURE DETERMINATION AND REFINEMENT
KEYWDS PROLYL OLIGOPEPTIDASE, AMNESIA, ALPHA/BETA-HYDROLASE, BETA-
KEYWDS 2 PROPELLER
EXPDTA X-RAY DIFFRACTION
AUTHOR V.FULOP
REVDAT 1 13-MAY-99 1QFM 0
JRNL AUTH V.FULOP,Z.BOCSKEI,L.POLGAR
JRNL TITL PROLYL OLIGOPEPTIDASE: AN UNUSUAL BETA-PROPELLER
JRNL TITL 2 DOMAIN REGULATES PROTEOLYSIS
JRNL REF CELL(CAMBRIDGE,MASS.) V. 94 161 1998
JRNL REFN ASTM CELLB5 US ISSN 0092-8674 0998
REMARK 1
REMARK 2
REMARK 2 RESOLUTION. 1.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.851
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.4
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.0
REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.0
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL
REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.0
REMARK 3 NUMBER OF REFLECTIONS : 139056
REMARK 3
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING SET) : 0.19
REMARK 3 FREE R VALUE : 0.206
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.0
REMARK 3 FREE R VALUE TEST SET COUNT : 5631
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL
REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : NULL
REMARK 3 BIN FREE R VALUE : NULL
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5708
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 0
REMARK 3 SOLVENT ATOMS : 937
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 14.7
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.5
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM C-V SIGMAA (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.01
REMARK 3 BOND ANGLES (DEGREES) : 1.0
REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL
REMARK 3 IMPROPER ANGLES (DEGREES) : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : NULL
REMARK 3 TOPOLOGY FILE 1 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1QFM COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-1999.
REMARK 100 THE RCSB ID CODE IS RCSB000831.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : JUN-1997
REMARK 200 TEMPERATURE (KELVIN) : 100.0
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SRS
REMARK 200 BEAMLINE : 9.6
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.87
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : MAR
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140350
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.4
REMARK 200 RESOLUTION RANGE LOW (A) : 30.0
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0
REMARK 200 DATA REDUNDANCY : 2.6
REMARK 200 R MERGE (I) : 0.057
REMARK 200 R SYM (I) : 0.057
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.4
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44
REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0
REMARK 200 DATA REDUNDANCY IN SHELL : 2.4
REMARK 200 R MERGE FOR SHELL (I) : 0.324
REMARK 200 R SYM FOR SHELL (I) : 0.324
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.4
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR
REMARK 200 SOFTWARE USED: CCP4, SHARP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.0
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.4
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: SEE REFERENCE
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 1/2-X,-Y,1/2+Z
REMARK 290 3555 -X,1/2+Y,1/2-Z
REMARK 290 4555 1/2+X,1/2-Y,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.35000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.30000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.80000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.30000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.35000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.80000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O3 GOL 790 C3 GOL 790 3656 1.42
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI
REMARK 500 OG SER A 554 C1 SGL A 781 2.15
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 4*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ASP A 8 N - CA - C ANGL. DEV. = -6.2 DEGREES
REMARK 500 PRO A 27 N - CA - C ANGL. DEV. = 6.4 DEGREES
REMARK 500 ASP A 35 N - CA - C ANGL. DEV. = 7.0 DEGREES
REMARK 500 PRO A 52 C - N - CA ANGL. DEV. = -5.7 DEGREES
REMARK 500 SER A 77 N - CA - C ANGL. DEV. =-10.9 DEGREES
REMARK 500 LYS A 82 N - CA - C ANGL. DEV. = -6.2 DEGREES
REMARK 500 ASN A 91 N - CA - C ANGL. DEV. = -8.0 DEGREES
REMARK 500 ASP A 122 N - CA - C ANGL. DEV. = 6.1 DEGREES
REMARK 500 VAL A 125 N - CA - C ANGL. DEV. = -9.2 DEGREES
REMARK 500 THR A 152 N - CA - C ANGL. DEV. =-10.0 DEGREES
REMARK 500 LYS A 157 N - CA - C ANGL. DEV. =-11.0 DEGREES
REMARK 500 THR A 179 N - CA - C ANGL. DEV. = -6.9 DEGREES
REMARK 500 SER A 197 N - CA - C ANGL. DEV. = -6.5 DEGREES
REMARK 500 LEU A 224 N - CA - C ANGL. DEV. = -5.7 DEGREES
REMARK 500 PRO A 229 N - CA - C ANGL. DEV. = 5.9 DEGREES
REMARK 500 PRO A 232 N - CA - C ANGL. DEV. = 6.8 DEGREES
REMARK 500 GLU A 239 N - CA - C ANGL. DEV. = -5.8 DEGREES
REMARK 500 ARG A 245 N - CA - C ANGL. DEV. = 6.3 DEGREES
REMARK 500 VAL A 247 N - CA - C ANGL. DEV. = -9.5 DEGREES
REMARK 500 GLU A 253 N - CA - C ANGL. DEV. = -7.0 DEGREES
REMARK 500 ARG A 260 N - CA - C ANGL. DEV. = -9.7 DEGREES
REMARK 500 ASP A 265 N - CA - C ANGL. DEV. = -8.4 DEGREES
REMARK 500 VAL A 280 N - CA - C ANGL. DEV. = -9.0 DEGREES
REMARK 500 ILE A 283 N - CA - C ANGL. DEV. = -6.8 DEGREES
REMARK 500 GLU A 296 N - CA - C ANGL. DEV. =-10.0 DEGREES
REMARK 500 GLY A 297 N - CA - C ANGL. DEV. = -5.7 DEGREES
REMARK 500 PHE A 302 C - CA - CB ANGL. DEV. = -5.7 DEGREES
REMARK 500 LYS A 303 N - CA - C ANGL. DEV. =-11.2 DEGREES
REMARK 500 ASP A 320 N - CA - C ANGL. DEV. = -8.6 DEGREES
REMARK 500 PRO A 321 N - CA - C ANGL. DEV. = 12.1 DEGREES
REMARK 500 VAL A 330 N - CA - C ANGL. DEV. = -6.0 DEGREES
REMARK 500 LEU A 338 N - CA - C ANGL. DEV. = -8.5 DEGREES
REMARK 500 SER A 346 N - CA - C ANGL. DEV. = 6.4 DEGREES
REMARK 500 ASN A 347 N - CA - C ANGL. DEV. = 7.2 DEGREES
REMARK 500 VAL A 350 N - CA - C ANGL. DEV. = -6.0 DEGREES
REMARK 500 LEU A 351 CA - CB - CG ANGL. DEV. = 12.5 DEGREES
REMARK 500 LEU A 354 N - CA - C ANGL. DEV. = -6.3 DEGREES
REMARK 500 VAL A 357 N - CA - C ANGL. DEV. = 5.7 DEGREES
REMARK 500 THR A 360 N - CA - C ANGL. DEV. = -7.5 DEGREES
REMARK 500 PHE A 375 N - CA - C ANGL. DEV. = -5.6 DEGREES
REMARK 500 GLU A 378 N - CA - C ANGL. DEV. = -5.8 DEGREES
REMARK 500 VAL A 382 N - CA - C ANGL. DEV. = -9.2 DEGREES
REMARK 500 PHE A 395 N - CA - C ANGL. DEV. = -8.2 DEGREES
REMARK 500 LEU A 402 N - CA - C ANGL. DEV. = 6.6 DEGREES
REMARK 500 GLY A 405 N - CA - C ANGL. DEV. = 5.7 DEGREES
REMARK 500 ILE A 407 N - CA - C ANGL. DEV. = -5.8 DEGREES
REMARK 500 ASP A 411 N - CA - C ANGL. DEV. = -5.7 DEGREES
REMARK 500 GLY A 459 N - CA - C ANGL. DEV. = 7.6 DEGREES
REMARK 500 HIS A 466 N - CA - C ANGL. DEV. = 5.8 DEGREES
REMARK 500 PRO A 467 N - CA - C ANGL. DEV. = -7.4 DEGREES
REMARK 500 PHE A 469 N - CA - C ANGL. DEV. = -6.1 DEGREES
REMARK 500 TYR A 473 N - CA - C ANGL. DEV. = -6.3 DEGREES
REMARK 500 GLY A 474 N - CA - C ANGL. DEV. = 5.8 DEGREES
REMARK 500 PHE A 476 N - CA - C ANGL. DEV. = 6.4 DEGREES
REMARK 500 HIS A 494 N - CA - C ANGL. DEV. = 6.2 DEGREES
REMARK 500 GLY A 497 N - CA - C ANGL. DEV. = 7.1 DEGREES
REMARK 500 GLY A 541 N - CA - C ANGL. DEV. = 7.0 DEGREES
REMARK 500 SER A 544 N - CA - C ANGL. DEV. = -6.6 DEGREES
REMARK 500 LEU A 548 N - CA - C ANGL. DEV. = 5.6 DEGREES
REMARK 500 GLY A 557 N - CA - C ANGL. DEV. = -6.0 DEGREES
REMARK 500 GLN A 566 N - CA - C ANGL. DEV. = 5.9 DEGREES
REMARK 500 LEU A 570 CA - CB - CG ANGL. DEV. = 6.6 DEGREES
REMARK 500 GLY A 579 N - CA - C ANGL. DEV. = 6.9 DEGREES
REMARK 500 VAL A 580 N - CA - C ANGL. DEV. = -7.1 DEGREES
REMARK 500 TYR A 599 N - CA - C ANGL. DEV. = 8.7 DEGREES
REMARK 500 GLY A 600 N - CA - C ANGL. DEV. = -7.7 DEGREES
REMARK 500 SER A 602 N - CA - C ANGL. DEV. = 5.9 DEGREES
REMARK 500 TRP A 610 C - CA - CB ANGL. DEV. = -6.1 DEGREES
REMARK 500 VAL A 620 N - CA - C ANGL. DEV. = -5.9 DEGREES
REMARK 500 SER A 632 N - CA - C ANGL. DEV. = -8.1 DEGREES
REMARK 500 ASP A 639 N - CA - C ANGL. DEV. = 7.4 DEGREES
REMARK 500 ARG A 643 N - CA - C ANGL. DEV. = -6.0 DEGREES
REMARK 500 VAL A 644 N - CA - C ANGL. DEV. = -7.3 DEGREES
REMARK 500 PRO A 646 N - CA - C ANGL. DEV. = 7.2 DEGREES
REMARK 500 LEU A 670 N - CA - C ANGL. DEV. = -9.0 DEGREES
REMARK 500 HIS A 673 N - CA - C ANGL. DEV. = -6.5 DEGREES
REMARK 500 ILE A 709 N - CA - C ANGL. DEV. = -6.7 DEGREES
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500
REMARK 500 TYR A 311 73.29 153.55
REMARK 500 SER A 346 67.45 -62.42
REMARK 500 SER A 554 65.83 -115.11
REMARK 500 THR A 590 30.42 -110.98
REMARK 525
REMARK 525 SOLVENT
REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED
REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE
REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL
REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 0 HOH 1193 DISTANCE = 6.03 ANGSTROMS
REMARK 525 0 HOH 1297 DISTANCE = 5.94 ANGSTROMS
REMARK 600
REMARK 600 HETEROGEN
REMARK 600 1-THIOXY-GLYCEROL (SGL781) IS COVALENTLY BOUND TO SER554
REMARK 600
REMARK 600 MONOTHIOGLYCEROL IS COVALENTLY BOUND TO CYS78 AND CYS532
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AS
REMARK 800 SITE_DESCRIPTION:
REMARK 800 ACTIVE SITE: CATALYTIC TRIAD
REMARK 800
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 CYS25, CYS57 AND CYS255 ARE OXIDIZED WITH ONE OXYGEN ATOM.
REMARK 999 CYS175 AND CYS601 ARE OXIDIZED WITH TWO OXYGEN ATOMS.
DBREF 1QFM A 1 710 SWS P23687 PPCE_PIG 1 710
SEQADV 1QFF CSX A 25 SWS P06971 CYS 25 SEE REMARK 999
SEQADV 1QFF CSX A 57 SWS P06971 CYS 57 SEE REMARK 999
SEQADV 1QFF CSX A 255 SWS P06971 CYS 255 SEE REMARK 999
SEQADV 1QFF CSW A 175 SWS P06971 CYS 175 SEE REMARK 999
SEQADV 1QFF CSW A 601 SWS P06971 CYS 601 SEE REMARK 999
SEQRES 1 A 710 MET LEU SER PHE GLN TYR PRO ASP VAL TYR ARG ASP GLU
SEQRES 2 A 710 THR ALA ILE GLN ASP TYR HIS GLY HIS LYS VAL CSX ASP
SEQRES 3 A 710 PRO TYR ALA TRP LEU GLU ASP PRO ASP SER GLU GLN THR
SEQRES 4 A 710 LYS ALA PHE VAL GLU ALA GLN ASN LYS ILE THR VAL PRO
SEQRES 5 A 710 PHE LEU GLU GLN CSX PRO ILE ARG GLY LEU TYR LYS GLU
SEQRES 6 A 710 ARG MET THR GLU LEU TYR ASP TYR PRO LYS TYR SER CYS
SEQRES 7 A 710 HIS PHE LYS LYS GLY LYS ARG TYR PHE TYR PHE TYR ASN
SEQRES 8 A 710 THR GLY LEU GLN ASN GLN ARG VAL LEU TYR VAL GLN ASP
SEQRES 9 A 710 SER LEU GLU GLY GLU ALA ARG VAL PHE LEU ASP PRO ASN
SEQRES 10 A 710 ILE LEU SER ASP ASP GLY THR VAL ALA LEU ARG GLY TYR
SEQRES 11 A 710 ALA PHE SER GLU ASP GLY GLU TYR PHE ALA TYR GLY LEU
SEQRES 12 A 710 SER ALA SER GLY SER ASP TRP VAL THR ILE LYS PHE MET
SEQRES 13 A 710 LYS VAL ASP GLY ALA LYS GLU LEU PRO ASP VAL LEU GLU
SEQRES 14 A 710 ARG VAL LYS PHE SER CSW MET ALA TRP THR HIS ASP GLY
SEQRES 15 A 710 LYS GLY MET PHE TYR ASN ALA TYR PRO GLN GLN ASP GLY
SEQRES 16 A 710 LYS SER ASP GLY THR GLU THR SER THR ASN LEU HIS GLN
SEQRES 17 A 710 LYS LEU TYR TYR HIS VAL LEU GLY THR ASP GLN SER GLU
SEQRES 18 A 710 ASP ILE LEU CYS ALA GLU PHE PRO ASP GLU PRO LYS TRP
SEQRES 19 A 710 MET GLY GLY ALA GLU LEU SER ASP ASP GLY ARG TYR VAL
SEQRES 20 A 710 LEU LEU SER ILE ARG GLU GLY CSX ASP PRO VAL ASN ARG
SEQRES 21 A 710 LEU TRP TYR CYS ASP LEU GLN GLN GLU SER ASN GLY ILE
SEQRES 22 A 710 THR GLY ILE LEU LYS TRP VAL LYS LEU ILE ASP ASN PHE
SEQRES 23 A 710 GLU GLY GLU TYR ASP TYR VAL THR ASN GLU GLY THR VAL
SEQRES 24 A 710 PHE THR PHE LYS THR ASN ARG HIS SER PRO ASN TYR ARG
SEQRES 25 A 710 LEU ILE ASN ILE ASP PHE THR ASP PRO GLU GLU SER LYS
SEQRES 26 A 710 TRP LYS VAL LEU VAL PRO GLU HIS GLU LYS ASP VAL LEU
SEQRES 27 A 710 GLU TRP VAL ALA CYS VAL ARG SER ASN PHE LEU VAL LEU
SEQRES 28 A 710 CYS TYR LEU HIS ASP VAL LYS ASN THR LEU GLN LEU HIS
SEQRES 29 A 710 ASP LEU ALA THR GLY ALA LEU LEU LYS ILE PHE PRO LEU
SEQRES 30 A 710 GLU VAL GLY SER VAL VAL GLY TYR SER GLY GLN LYS LYS
SEQRES 31 A 710 ASP THR GLU ILE PHE TYR GLN PHE THR SER PHE LEU SER
SEQRES 32 A 710 PRO GLY ILE ILE TYR HIS CYS ASP LEU THR LYS GLU GLU
SEQRES 33 A 710 LEU GLU PRO ARG VAL PHE ARG GLU VAL THR VAL LYS GLY
SEQRES 34 A 710 ILE ASP ALA SER ASP TYR GLN THR VAL GLN ILE PHE TYR
SEQRES 35 A 710 PRO SER LYS ASP GLY THR LYS ILE PRO MET PHE ILE VAL
SEQRES 36 A 710 HIS LYS LYS GLY ILE LYS LEU ASP GLY SER HIS PRO ALA
SEQRES 37 A 710 PHE LEU TYR GLY TYR GLY GLY PHE ASN ILE SER ILE THR
SEQRES 38 A 710 PRO ASN TYR SER VAL SER ARG LEU ILE PHE VAL ARG HIS
SEQRES 39 A 710 MET GLY GLY VAL LEU ALA VAL ALA ASN ILE ARG GLY GLY
SEQRES 40 A 710 GLY GLU TYR GLY GLU THR TRP HIS LYS GLY GLY ILE LEU
SEQRES 41 A 710 ALA ASN LYS GLN ASN CYS PHE ASP ASP PHE GLN CYS ALA
SEQRES 42 A 710 ALA GLU TYR LEU ILE LYS GLU GLY TYR THR SER PRO LYS
SEQRES 43 A 710 ARG LEU THR ILE ASN GLY GLY SER ASN GLY GLY LEU LEU
SEQRES 44 A 710 VAL ALA THR CYS ALA ASN GLN ARG PRO ASP LEU PHE GLY
SEQRES 45 A 710 CYS VAL ILE ALA GLN VAL GLY VAL MET ASP MET LEU LYS
SEQRES 46 A 710 PHE HIS LYS TYR THR ILE GLY HIS ALA TRP THR THR ASP
SEQRES 47 A 710 TYR GLY CSW SER ASP SER LYS GLN HIS PHE GLU TRP LEU
SEQRES 48 A 710 ILE LYS TYR SER PRO LEU HIS ASN VAL LYS LEU PRO GLU
SEQRES 49 A 710 ALA ASP ASP ILE GLN TYR PRO SER MET LEU LEU LEU THR
SEQRES 50 A 710 ALA ASP HIS ASP ASP ARG VAL VAL PRO LEU HIS SER LEU
SEQRES 51 A 710 LYS PHE ILE ALA THR LEU GLN TYR ILE VAL GLY ARG SER
SEQRES 52 A 710 ARG LYS GLN ASN ASN PRO LEU LEU ILE HIS VAL ASP THR
SEQRES 53 A 710 LYS ALA GLY HIS GLY ALA GLY LYS PRO THR ALA LYS VAL
SEQRES 54 A 710 ILE GLU GLU VAL SER ASP MET PHE ALA PHE ILE ALA ARG
SEQRES 55 A 710 CYS LEU ASN ILE ASP TRP ILE PRO
MODRES 1QFM CSX A 25 CYS S-OXY CYSTEINE
MODRES 1QFM CSX A 57 CYS S-OXY CYSTEINE
MODRES 1QFM CSW A 175 CYS DOUBLE OXIDIZED CYSTEINE
MODRES 1QFM CSX A 255 CYS S-OXY CYSTEINE
MODRES 1QFM CSW A 601 CYS DOUBLE OXIDIZED CYSTEINE
HET CSX A 25 7
HET CSX A 57 7
HET CSW A 175 8
HET CSX A 255 7
HET CSW A 601 8
HET SGL A 781 7
HET SGL A 782 7
HET SGM A 783 6
HET SGM A 784 6
HET GOL 790 6
HET GOL 791 6
HET GOL 792 6
HET GOL 793 6
HETNAM CSX S-OXY CYSTEINE
HETNAM CSW DOUBLE OXIDIZED CYSTEINE
HETNAM SGL 1-THIOXY-GLYCEROL
HETNAM SGM MONOTHIOGLYCEROL
HETNAM GOL GLYCEROL
FORMUL 1 CSX 3(C3 H7 N1 O3 S1)
FORMUL 1 CSW 2(C3 H7 N1 O4 S1)
FORMUL 2 SGL 2(C3 H8 O3 S1)
FORMUL 4 SGM 2(C3 H8 O2 S1)
FORMUL 6 GOL 4(C3 H8 O3)
FORMUL 10 HOH *887(H2 O1)
HELIX 1 1 ALA A 29 GLU A 32 5 4
HELIX 2 2 GLU A 37 GLU A 55 1 19
HELIX 3 3 PRO A 58 LEU A 70 1 13
HELIX 4 4 PRO A 116 LEU A 119 5 4
HELIX 5 5 GLN A 219 GLU A 221 5 3
HELIX 6 6 LEU A 266 GLN A 268 5 3
HELIX 7 7 PHE A 318 ASP A 320 5 3
HELIX 8 8 GLU A 323 LYS A 325 5 3
HELIX 9 9 ALA A 432 ASP A 434 5 3
HELIX 10 10 VAL A 486 MET A 495 1 10
HELIX 11 11 GLY A 511 GLY A 518 1 8
HELIX 12 12 LEU A 520 LYS A 539 5 20
HELIX 13 13 PRO A 545 ARG A 547 5 3
HELIX 14 14 SER A 554 GLN A 566 5 13
HELIX 15 15 PRO A 568 LEU A 570 5 3
HELIX 16 16 PHE A 586 LYS A 588 5 3
HELIX 17 17 GLY A 592 TYR A 599 5 8
HELIX 18 18 LYS A 605 TYR A 614 1 10
HELIX 19 19 PRO A 616 HIS A 618 5 3
HELIX 20 20 PRO A 646 ILE A 659 5 14
HELIX 21 21 THR A 686 LEU A 704 1 19
SHEET 1 A 2 ILE A 16 TYR A 19 0
SHEET 2 A 2 HIS A 22 CYS A 25 -1 N VAL A 24 O GLN A 17
SHEET 1 B 4 PHE A 80 LYS A 82 0
SHEET 2 B 4 ARG A 85 TYR A 90 -1 N PHE A 87 O PHE A 80
SHEET 3 B 4 VAL A 99 GLN A 103 -1 N GLN A 103 O TYR A 86
SHEET 4 B 4 ALA A 110 LEU A 114 -1 N LEU A 114 O LEU A 100
SHEET 1 C 3 VAL A 125 LEU A 127 0
SHEET 2 C 3 TYR A 138 ALA A 145 -1 N SER A 144 O ALA A 126
SHEET 3 C 3 THR A 152 LYS A 157 -1 N MET A 156 O PHE A 139
SHEET 1 D 2 TYR A 130 PHE A 132 0
SHEET 2 D 2 PHE A 139 TYR A 141 -1 N ALA A 140 O ALA A 131
SHEET 1 E 4 MET A 176 TRP A 178 0
SHEET 2 E 4 GLY A 184 ALA A 189 -1 N PHE A 186 O ALA A 177
SHEET 3 E 4 LYS A 209 VAL A 214 -1 N HIS A 213 O MET A 185
SHEET 4 E 4 ILE A 223 ALA A 226 -1 N ALA A 226 O LEU A 210
SHEET 1 F 3 MET A 235 LEU A 240 0
SHEET 2 F 3 TYR A 246 ARG A 252 -1 N ARG A 252 O MET A 235
SHEET 3 F 3 ARG A 260 ASP A 265 -1 N CYS A 264 O VAL A 247
SHEET 1 G 4 TYR A 290 GLU A 296 0
SHEET 2 G 4 VAL A 299 THR A 304 -1 N LYS A 303 O ASP A 291
SHEET 3 G 4 ARG A 312 ASP A 317 -1 N ILE A 316 O PHE A 300
SHEET 4 G 4 LYS A 327 VAL A 330 -1 N VAL A 330 O LEU A 313
SHEET 1 H 4 VAL A 337 VAL A 344 0
SHEET 2 H 4 PHE A 348 HIS A 355 -1 N LEU A 354 O VAL A 337
SHEET 3 H 4 LYS A 358 ASP A 365 -1 N HIS A 364 O LEU A 349
SHEET 4 H 4 LEU A 371 PHE A 375 -1 N PHE A 375 O LEU A 361
SHEET 1 I 4 SER A 381 SER A 386 0
SHEET 2 I 4 GLU A 393 THR A 399 -1 N THR A 399 O SER A 381
SHEET 3 I 4 ILE A 406 ASP A 411 -1 N CYS A 410 O ILE A 394
SHEET 4 I 4 ARG A 420 GLU A 424 -1 N ARG A 423 O ILE A 407
SHEET 1 J 8 TYR A 435 PRO A 443 0
SHEET 2 J 8 LYS A 449 LYS A 457 -1 N HIS A 456 O GLN A 436
SHEET 3 J 8 VAL A 498 ALA A 502 -1 N VAL A 501 O PHE A 453
SHEET 4 J 8 ALA A 468 TYR A 471 1 N PHE A 469 O VAL A 498
SHEET 5 J 8 LEU A 548 GLY A 553 1 N THR A 549 O ALA A 468
SHEET 6 J 8 CYS A 573 GLN A 577 1 N CYS A 573 O ILE A 550
SHEET 7 J 8 SER A 632 ALA A 638 1 N SER A 632 O VAL A 574
SHEET 8 J 8 LEU A 670 ASP A 675 1 N LEU A 671 O MET A 633
LINK OG SER A 554 C2 SGL A 781
LINK SG CYS A 78 S1 SGM A 783
LINK SG CYS A 532 S1 SGM A 784
SITE 1 AS 3 SER A 554 ASP A 641 HIS A 680
CRYST1 70.700 99.600 110.600 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014144 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010040 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009041 0.00000 |