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HEADER HYDROLASE 02-APR-19 6R8P
TITLE NOTUM FRAGMENT 723
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PALMITOLEOYL-PROTEIN CARBOXYLESTERASE NOTUM;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: HNOTUM;
COMPND 5 EC: 3.1.1.98;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: NOTUM, OK/SW-CL.30;
SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606;
SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-
KEYWDS NOTUM INHIBITOR, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.ZHAO,E.Y.JONES
REVDAT 1 08-MAY-19 6R8P 0
JRNL AUTH B.N.ATKINSON,D.STEADMAN,Y.ZHAO,J.SIPTHORP,L.VECCHIA,
JRNL AUTH 2 R.R.RUZA,F.JEGNATHAN,G.LINES,S.FREW,A.MONAGHAN,S.KJAER,
JRNL AUTH 3 M.BICTASH,Y.JONES,P.V.FISH
JRNL TITL DISCOVERY OF 2-PHENOXYACETAMIDES AS INHIBITORS OF THE
JRNL TITL 2 WNT-DEPALMITOLEATING ENZYME NOTUM FROM AN X-RAY FRAGMENT
JRNL TITL 3 SCREEN
JRNL REF MEDCHEMCOMM 2019
JRNL REFN ESSN 2040-2511
JRNL DOI 10.1039/C9MD00096H
REMARK 2
REMARK 2 RESOLUTION. 1.45 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.15_3459
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.49
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0
REMARK 3 NUMBER OF REFLECTIONS : 61902
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.199
REMARK 3 R VALUE (WORKING SET) : 0.197
REMARK 3 FREE R VALUE : 0.227
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030
REMARK 3 FREE R VALUE TEST SET COUNT : 3112
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 53.5266 - 4.0623 1.00 2849 210 0.1751 0.2030
REMARK 3 2 4.0623 - 3.2245 1.00 2786 138 0.1649 0.1894
REMARK 3 3 3.2245 - 2.8169 1.00 2735 148 0.1852 0.2141
REMARK 3 4 2.8169 - 2.5594 1.00 2717 150 0.1864 0.1854
REMARK 3 5 2.5594 - 2.3759 1.00 2718 147 0.1809 0.1978
REMARK 3 6 2.3759 - 2.2358 1.00 2710 134 0.1750 0.2300
REMARK 3 7 2.2358 - 2.1239 1.00 2700 137 0.1683 0.2312
REMARK 3 8 2.1239 - 2.0314 1.00 2673 161 0.1803 0.2116
REMARK 3 9 2.0314 - 1.9532 1.00 2669 150 0.1830 0.2340
REMARK 3 10 1.9532 - 1.8858 1.00 2684 145 0.1975 0.2336
REMARK 3 11 1.8858 - 1.8268 1.00 2662 157 0.2104 0.2819
REMARK 3 12 1.8268 - 1.7746 1.00 2661 153 0.2317 0.2711
REMARK 3 13 1.7746 - 1.7279 0.99 2673 128 0.2433 0.2332
REMARK 3 14 1.7279 - 1.6857 1.00 2644 132 0.2466 0.2466
REMARK 3 15 1.6857 - 1.6474 0.99 2693 120 0.2585 0.3153
REMARK 3 16 1.6474 - 1.6124 0.99 2640 128 0.2720 0.3483
REMARK 3 17 1.6124 - 1.5801 0.99 2634 123 0.2860 0.3580
REMARK 3 18 1.5801 - 1.5503 0.99 2653 142 0.2994 0.3344
REMARK 3 19 1.5503 - 1.5226 0.98 2614 123 0.3242 0.3649
REMARK 3 20 1.5226 - 1.4968 0.97 2624 137 0.3327 0.3893
REMARK 3 21 1.4968 - 1.4726 0.97 2580 124 0.3588 0.3730
REMARK 3 22 1.4726 - 1.4500 0.93 2471 125 0.3831 0.3964
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.810
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 17.81
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.72
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 5
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 451 )
REMARK 3 ORIGIN FOR THE GROUP (A): 8.1011 -14.3691 -6.0968
REMARK 3 T TENSOR
REMARK 3 T11: 0.1147 T22: 0.1437
REMARK 3 T33: 0.1484 T12: -0.0095
REMARK 3 T13: 0.0090 T23: -0.0004
REMARK 3 L TENSOR
REMARK 3 L11: 0.6989 L22: 1.4046
REMARK 3 L33: 1.4625 L12: -0.2038
REMARK 3 L13: -0.3503 L23: -0.7227
REMARK 3 S TENSOR
REMARK 3 S11: -0.0584 S12: -0.0254 S13: -0.1144
REMARK 3 S21: -0.0676 S22: -0.0123 S23: -0.0916
REMARK 3 S31: 0.1053 S32: 0.0879 S33: 0.0751
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 159 )
REMARK 3 ORIGIN FOR THE GROUP (A): 9.0977 11.1886 2.6797
REMARK 3 T TENSOR
REMARK 3 T11: 0.1379 T22: 0.1137
REMARK 3 T33: 0.1541 T12: -0.0100
REMARK 3 T13: -0.0191 T23: 0.0102
REMARK 3 L TENSOR
REMARK 3 L11: 1.1117 L22: 1.7783
REMARK 3 L33: 2.9454 L12: 0.0187
REMARK 3 L13: -0.3522 L23: 0.3608
REMARK 3 S TENSOR
REMARK 3 S11: -0.0031 S12: -0.0436 S13: 0.1402
REMARK 3 S21: 0.0855 S22: 0.0070 S23: -0.0454
REMARK 3 S31: -0.2582 S32: 0.0914 S33: 0.0041
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 224 )
REMARK 3 ORIGIN FOR THE GROUP (A): 5.6350 9.6101 -4.2136
REMARK 3 T TENSOR
REMARK 3 T11: 0.1303 T22: 0.0845
REMARK 3 T33: 0.1389 T12: -0.0165
REMARK 3 T13: -0.0213 T23: 0.0237
REMARK 3 L TENSOR
REMARK 3 L11: 1.5990 L22: 1.3594
REMARK 3 L33: 2.3367 L12: -0.1908
REMARK 3 L13: -0.6289 L23: 0.3329
REMARK 3 S TENSOR
REMARK 3 S11: 0.0076 S12: 0.0799 S13: 0.1716
REMARK 3 S21: -0.0235 S22: 0.0172 S23: 0.0109
REMARK 3 S31: -0.2609 S32: -0.0429 S33: -0.0415
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 286 )
REMARK 3 ORIGIN FOR THE GROUP (A): -0.6136 -2.1820 -1.5532
REMARK 3 T TENSOR
REMARK 3 T11: 0.0888 T22: 0.1077
REMARK 3 T33: 0.1067 T12: 0.0034
REMARK 3 T13: 0.0051 T23: 0.0013
REMARK 3 L TENSOR
REMARK 3 L11: 1.4807 L22: 1.9275
REMARK 3 L33: 1.2145 L12: 0.0529
REMARK 3 L13: -0.1879 L23: -0.4361
REMARK 3 S TENSOR
REMARK 3 S11: -0.0130 S12: -0.0584 S13: 0.0025
REMARK 3 S21: 0.1501 S22: -0.0035 S23: 0.1348
REMARK 3 S31: -0.1413 S32: -0.0946 S33: -0.0640
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 320 )
REMARK 3 ORIGIN FOR THE GROUP (A): -10.7138 -2.1319 4.7511
REMARK 3 T TENSOR
REMARK 3 T11: 0.1376 T22: 0.1729
REMARK 3 T33: 0.1834 T12: 0.0006
REMARK 3 T13: 0.0313 T23: 0.0227
REMARK 3 L TENSOR
REMARK 3 L11: 4.5182 L22: 4.3022
REMARK 3 L33: 2.8761 L12: 2.3511
REMARK 3 L13: 1.7530 L23: 3.5112
REMARK 3 S TENSOR
REMARK 3 S11: 0.0676 S12: -0.3014 S13: 0.0986
REMARK 3 S21: 0.1362 S22: -0.1886 S23: 0.2629
REMARK 3 S31: -0.0272 S32: -0.2268 S33: 0.1007
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6R8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-19.
REMARK 100 THE DEPOSITION ID IS D_1292101391.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-MAR-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 4.2
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : XIA2
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62462
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450
REMARK 200 RESOLUTION RANGE LOW (A) : 48.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0
REMARK 200 DATA REDUNDANCY : 6.300
REMARK 200 R MERGE (I) : 0.07000
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : 10.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7
REMARK 200 DATA REDUNDANCY IN SHELL : 5.50
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 38.40
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE 0.1 M SODIUM
REMARK 280 CITRATE PH4.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 300K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.30750
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.43350
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.39550
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.43350
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.30750
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.39550
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLU A 78
REMARK 465 THR A 79
REMARK 465 GLY A 80
REMARK 465 SER A 81
REMARK 465 ALA A 82
REMARK 465 GLN A 83
REMARK 465 GLN A 84
REMARK 465 LEU A 85
REMARK 465 ASN A 86
REMARK 465 GLU A 87
REMARK 465 LEU A 351
REMARK 465 THR A 352
REMARK 465 GLY A 353
REMARK 465 GLN A 354
REMARK 465 ASP A 420
REMARK 465 SER A 421
REMARK 465 HIS A 422
REMARK 465 LYS A 423
REMARK 465 ALA A 424
REMARK 465 SER A 425
REMARK 465 LYS A 426
REMARK 465 GLY A 452
REMARK 465 THR A 453
REMARK 465 LYS A 454
REMARK 465 HIS A 455
REMARK 465 HIS A 456
REMARK 465 HIS A 457
REMARK 465 HIS A 458
REMARK 465 HIS A 459
REMARK 465 HIS A 460
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 VAL A 280 CG1 CG2
REMARK 470 THR A 427 OG1 CG2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O4 SO4 A 510 O HOH A 601 1.99
REMARK 500 O6 NAG A 501 O HOH A 602 2.07
REMARK 500 O HOH A 611 O HOH A 714 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 TRP A 128 -148.16 60.91
REMARK 500 SER A 148 147.14 -170.26
REMARK 500 SER A 232 -123.31 60.89
REMARK 500 SER A 232 -122.75 59.86
REMARK 500 GLN A 311 -175.26 68.78
REMARK 500 PHE A 339 67.01 -119.46
REMARK 500 GLU A 390 155.97 71.06
REMARK 500 ILE A 391 -35.00 -156.88
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 508
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 509
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 510
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 511
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 512
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 513
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 514
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 515
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 516
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue JVB A 517
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 501 bound
REMARK 800 to ASN A 96
DBREF 6R8P A 81 451 UNP Q6P988 NOTUM_HUMAN 81 451
SEQADV 6R8P GLU A 78 UNP Q6P988 EXPRESSION TAG
SEQADV 6R8P THR A 79 UNP Q6P988 EXPRESSION TAG
SEQADV 6R8P GLY A 80 UNP Q6P988 EXPRESSION TAG
SEQADV 6R8P SER A 330 UNP Q6P988 CYS 330 ENGINEERED MUTATION
SEQADV 6R8P GLY A 452 UNP Q6P988 EXPRESSION TAG
SEQADV 6R8P THR A 453 UNP Q6P988 EXPRESSION TAG
SEQADV 6R8P LYS A 454 UNP Q6P988 EXPRESSION TAG
SEQADV 6R8P HIS A 455 UNP Q6P988 EXPRESSION TAG
SEQADV 6R8P HIS A 456 UNP Q6P988 EXPRESSION TAG
SEQADV 6R8P HIS A 457 UNP Q6P988 EXPRESSION TAG
SEQADV 6R8P HIS A 458 UNP Q6P988 EXPRESSION TAG
SEQADV 6R8P HIS A 459 UNP Q6P988 EXPRESSION TAG
SEQADV 6R8P HIS A 460 UNP Q6P988 EXPRESSION TAG
SEQRES 1 A 383 GLU THR GLY SER ALA GLN GLN LEU ASN GLU ASP LEU ARG
SEQRES 2 A 383 LEU HIS LEU LEU LEU ASN THR SER VAL THR CYS ASN ASP
SEQRES 3 A 383 GLY SER PRO ALA GLY TYR TYR LEU LYS GLU SER ARG GLY
SEQRES 4 A 383 SER ARG ARG TRP LEU LEU PHE LEU GLU GLY GLY TRP TYR
SEQRES 5 A 383 CYS PHE ASN ARG GLU ASN CYS ASP SER ARG TYR ASP THR
SEQRES 6 A 383 MET ARG ARG LEU MET SER SER ARG ASP TRP PRO ARG THR
SEQRES 7 A 383 ARG THR GLY THR GLY ILE LEU SER SER GLN PRO GLU GLU
SEQRES 8 A 383 ASN PRO TYR TRP TRP ASN ALA ASN MET VAL PHE ILE PRO
SEQRES 9 A 383 TYR CYS SER SER ASP VAL TRP SER GLY ALA SER SER LYS
SEQRES 10 A 383 SER GLU LYS ASN GLU TYR ALA PHE MET GLY ALA LEU ILE
SEQRES 11 A 383 ILE GLN GLU VAL VAL ARG GLU LEU LEU GLY ARG GLY LEU
SEQRES 12 A 383 SER GLY ALA LYS VAL LEU LEU LEU ALA GLY SER SER ALA
SEQRES 13 A 383 GLY GLY THR GLY VAL LEU LEU ASN VAL ASP ARG VAL ALA
SEQRES 14 A 383 GLU GLN LEU GLU LYS LEU GLY TYR PRO ALA ILE GLN VAL
SEQRES 15 A 383 ARG GLY LEU ALA ASP SER GLY TRP PHE LEU ASP ASN LYS
SEQRES 16 A 383 GLN TYR ARG HIS THR ASP CYS VAL ASP THR ILE THR CYS
SEQRES 17 A 383 ALA PRO THR GLU ALA ILE ARG ARG GLY ILE ARG TYR TRP
SEQRES 18 A 383 ASN GLY VAL VAL PRO GLU ARG CYS ARG ARG GLN PHE GLN
SEQRES 19 A 383 GLU GLY GLU GLU TRP ASN CYS PHE PHE GLY TYR LYS VAL
SEQRES 20 A 383 TYR PRO THR LEU ARG SER PRO VAL PHE VAL VAL GLN TRP
SEQRES 21 A 383 LEU PHE ASP GLU ALA GLN LEU THR VAL ASP ASN VAL HIS
SEQRES 22 A 383 LEU THR GLY GLN PRO VAL GLN GLU GLY LEU ARG LEU TYR
SEQRES 23 A 383 ILE GLN ASN LEU GLY ARG GLU LEU ARG HIS THR LEU LYS
SEQRES 24 A 383 ASP VAL PRO ALA SER PHE ALA PRO ALA CYS LEU SER HIS
SEQRES 25 A 383 GLU ILE ILE ILE ARG SER HIS TRP THR ASP VAL GLN VAL
SEQRES 26 A 383 LYS GLY THR SER LEU PRO ARG ALA LEU HIS CYS TRP ASP
SEQRES 27 A 383 ARG SER LEU HIS ASP SER HIS LYS ALA SER LYS THR PRO
SEQRES 28 A 383 LEU LYS GLY CYS PRO VAL HIS LEU VAL ASP SER CYS PRO
SEQRES 29 A 383 TRP PRO HIS CYS ASN PRO SER CYS PRO THR GLY THR LYS
SEQRES 30 A 383 HIS HIS HIS HIS HIS HIS
HET NAG A 501 14
HET GOL A 502 6
HET GOL A 503 6
HET SO4 A 504 5
HET SO4 A 505 5
HET SO4 A 506 5
HET SO4 A 507 5
HET SO4 A 508 5
HET SO4 A 509 5
HET SO4 A 510 5
HET SO4 A 511 5
HET SO4 A 512 5
HET SO4 A 513 5
HET SO4 A 514 5
HET SO4 A 515 5
HET DMS A 516 4
HET JVB A 517 18
HETNAM NAG N-ACETYL-D-GLUCOSAMINE
HETNAM GOL GLYCEROL
HETNAM SO4 SULFATE ION
HETNAM DMS DIMETHYL SULFOXIDE
HETNAM JVB 2-(2-METHYLPHENOXY)-~{N}-PYRIDIN-3-YL-ETHANAMIDE
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 NAG C8 H15 N O6
FORMUL 3 GOL 2(C3 H8 O3)
FORMUL 5 SO4 12(O4 S 2-)
FORMUL 17 DMS C2 H6 O S
FORMUL 18 JVB C14 H14 N2 O2
FORMUL 19 HOH *145(H2 O)
HELIX 1 AA1 ASN A 132 MET A 143 1 12
HELIX 2 AA2 ARG A 144 MET A 147 5 4
HELIX 3 AA3 THR A 159 SER A 163 5 5
HELIX 4 AA4 MET A 203 GLY A 217 1 15
HELIX 5 AA5 ARG A 218 ALA A 223 5 6
HELIX 6 AA6 SER A 232 LEU A 252 1 21
HELIX 7 AA7 ALA A 286 ASN A 299 1 14
HELIX 8 AA8 PRO A 303 GLN A 311 1 9
HELIX 9 AA9 GLU A 314 PHE A 319 5 6
HELIX 10 AB1 PHE A 320 TYR A 325 1 6
HELIX 11 AB2 PRO A 326 LEU A 328 5 3
HELIX 12 AB3 GLU A 341 ASP A 347 1 7
HELIX 13 AB4 GLN A 357 LEU A 375 1 19
HELIX 14 AB5 LEU A 407 LEU A 418 1 12
SHEET 1 AA110 THR A 155 ARG A 156 0
SHEET 2 AA110 LEU A 89 LEU A 93 -1 N LEU A 89 O ARG A 156
SHEET 3 AA110 GLY A 108 LYS A 112 -1 O TYR A 109 N HIS A 92
SHEET 4 AA110 ASN A 176 ILE A 180 -1 O PHE A 179 N TYR A 110
SHEET 5 AA110 ARG A 119 LEU A 124 1 N PHE A 123 O ILE A 180
SHEET 6 AA110 VAL A 225 SER A 231 1 O ALA A 229 N LEU A 124
SHEET 7 AA110 GLN A 258 ASP A 264 1 O ARG A 260 N LEU A 228
SHEET 8 AA110 VAL A 332 VAL A 335 1 O VAL A 335 N ALA A 263
SHEET 9 AA110 SER A 381 ALA A 383 1 O PHE A 382 N VAL A 334
SHEET 10 AA110 HIS A 435 VAL A 437 1 O LEU A 436 N ALA A 383
SHEET 1 AA2 2 PHE A 339 ASP A 340 0
SHEET 2 AA2 2 LEU A 387 SER A 388 1 O SER A 388 N PHE A 339
SHEET 1 AA3 2 GLN A 401 VAL A 402 0
SHEET 2 AA3 2 THR A 405 SER A 406 -1 O THR A 405 N VAL A 402
SSBOND 1 CYS A 101 CYS A 183 1555 1555 2.04
SSBOND 2 CYS A 130 CYS A 136 1555 1555 2.06
SSBOND 3 CYS A 279 CYS A 285 1555 1555 2.04
SSBOND 4 CYS A 306 CYS A 318 1555 1555 2.09
SSBOND 5 CYS A 386 CYS A 449 1555 1555 2.02
SSBOND 6 CYS A 413 CYS A 432 1555 1555 2.02
SSBOND 7 CYS A 440 CYS A 445 1555 1555 2.04
LINK ND2 ASN A 96 C1 NAG A 501 1555 1555 1.42
SITE 1 AC1 6 GLY A 127 TRP A 128 SER A 232 ALA A 233
SITE 2 AC1 6 HIS A 389 JVB A 517
SITE 1 AC2 3 ARG A 394 SER A 395 HIS A 396
SITE 1 AC3 7 ARG A 133 LYS A 197 GLU A 199 ARG A 275
SITE 2 AC3 7 TYR A 297 HOH A 653 HOH A 684
SITE 1 AC4 5 ARG A 119 TYR A 171 TRP A 172 TRP A 173
SITE 2 AC4 5 ASN A 174
SITE 1 AC5 4 ARG A 305 ARG A 308 GLU A 358 ARG A 361
SITE 1 AC6 3 ARG A 90 HIS A 92 ARG A 218
SITE 1 AC7 4 ARG A 244 VAL A 302 GLU A 304 HOH A 671
SITE 1 AC8 4 GLU A 125 TRP A 152 ARG A 156 HOH A 615
SITE 1 AC9 3 HIS A 373 LYS A 376 HOH A 601
SITE 1 AD1 4 SER A 117 ARG A 118 ARG A 119 LYS A 224
SITE 1 AD2 5 ARG A 90 LYS A 112 GLU A 113 ARG A 115
SITE 2 AD2 5 HOH A 644
SITE 1 AD3 4 PRO A 153 ARG A 154 LYS A 430 NAG A 501
SITE 1 AD4 3 ARG A 145 ARG A 416 HIS A 419
SITE 1 AD5 9 THR A 142 MET A 143 ARG A 144 ARG A 145
SITE 2 AD5 9 ARG A 409 HIS A 412 ARG A 416 HOH A 608
SITE 3 AD5 9 HOH A 694
SITE 1 AD6 6 TYR A 325 LEU A 328 ARG A 329 SER A 330
SITE 2 AD6 6 PRO A 331 VAL A 332
SITE 1 AD7 7 TRP A 128 TYR A 129 THR A 236 PHE A 268
SITE 2 AD7 7 PHE A 319 VAL A 346 GOL A 502
SITE 1 AD8 7 ASN A 96 SER A 98 VAL A 99 PRO A 153
SITE 2 AD8 7 ARG A 154 SO4 A 513 HOH A 602
CRYST1 60.615 72.791 78.867 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016497 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013738 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012680 0.00000
TER 2855 THR A 451
MASTER 435 0 17 14 14 0 26 6 3078 1 124 30
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