longtext: 8oim-pdb

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HEADER    HYDROLASE                               23-MAR-23   8OIM
TITLE     CRYSTAL STRUCTURE OF THE LIPASE SPL FROM SPHINGOMONAS SP. HXN-200
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: LIPASE;
COMPND   3 CHAIN: A, B;
COMPND   4 ENGINEERED: YES
SOURCE    MOL_ID: 1;
SOURCE   2 ORGANISM_SCIENTIFIC: SPHINGOMONAS SP.;
SOURCE   3 ORGANISM_TAXID: 28214;
SOURCE   4 GENE: LH19_08550;
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS    ALPHA-BETA HYDROLASE, LIPASE, SPL, HYDROLASE
EXPDTA    X-RAY DIFFRACTION
AUTHOR    D.MOKOS,K.GRUBER,B.DANIEL
REVDAT   1   03-APR-24 8OIM    0
JRNL        AUTH   E.ZUKIC,D.MOKOS,B.DANIEL,M.WEBER,N.STIX,K.DITRICH,
JRNL        AUTH 2 C.WILLRODT,K.GRUBER,W.KROUTIL
JRNL        TITL   AMIDE FORMATION OF (HETERO)AROMATIC ESTERS AND PRIMARY
JRNL        TITL 2 AMINES IN BUFFER CATALYZED BY SERINE HYDROLASES: AN ASP NEXT
JRNL        TITL 3 TO SER OF THE CATALYTIC TRIAD OF SERINE HYDROLASES IS
JRNL        TITL 4 CRUCIAL FOR ACTIVITY
JRNL        REF    TO BE PUBLISHED
JRNL        REFN
REMARK   2
REMARK   2 RESOLUTION.    1.99 ANGSTROMS.
REMARK   3
REMARK   3 REFINEMENT.
REMARK   3   PROGRAM     : REFMAC 5.8.0403
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN
REMARK   3
REMARK   3    REFINEMENT TARGET : NULL
REMARK   3
REMARK   3  DATA USED IN REFINEMENT.
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 42.05
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL
REMARK   3   COMPLETENESS FOR RANGE        (%) : 94.6
REMARK   3   NUMBER OF REFLECTIONS             : 44805
REMARK   3
REMARK   3  FIT TO DATA USED IN REFINEMENT.
REMARK   3   CROSS-VALIDATION METHOD          : FREE R-VALUE
REMARK   3   FREE R VALUE TEST SET SELECTION  : NULL
REMARK   3   R VALUE     (WORKING + TEST SET) : NULL
REMARK   3   R VALUE            (WORKING SET) : 0.165
REMARK   3   FREE R VALUE                     : 0.202
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.153
REMARK   3   FREE R VALUE TEST SET COUNT      : 2309
REMARK   3
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.
REMARK   3   TOTAL NUMBER OF BINS USED           : 20
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.99
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.05
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 2941
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 89.18
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2120
REMARK   3   BIN FREE R VALUE SET COUNT          : 157
REMARK   3   BIN FREE R VALUE                    : 0.2640
REMARK   3
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK   3   PROTEIN ATOMS            : 4674
REMARK   3   NUCLEIC ACID ATOMS       : 0
REMARK   3   HETEROGEN ATOMS          : 0
REMARK   3   SOLVENT ATOMS            : 360
REMARK   3
REMARK   3  B VALUES.
REMARK   3   FROM WILSON PLOT           (A**2) : NULL
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 30.46
REMARK   3   OVERALL ANISOTROPIC B VALUE.
REMARK   3    B11 (A**2) : -1.02900
REMARK   3    B22 (A**2) : 1.90200
REMARK   3    B33 (A**2) : -0.96200
REMARK   3    B12 (A**2) : 0.00000
REMARK   3    B13 (A**2) : 0.50700
REMARK   3    B23 (A**2) : 0.00000
REMARK   3
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.
REMARK   3   ESU BASED ON R VALUE                            (A): 0.162
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.144
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.102
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.699
REMARK   3
REMARK   3 CORRELATION COEFFICIENTS.
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.961
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.948
REMARK   3
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  4798 ; 0.015 ; 0.012
REMARK   3   BOND LENGTHS OTHERS               (A):  4476 ; 0.001 ; 0.016
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  6560 ; 2.037 ; 1.658
REMARK   3   BOND ANGLES OTHERS          (DEGREES): 10326 ; 0.641 ; 1.568
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   616 ; 6.966 ; 5.000
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):    38 ; 8.198 ; 5.000
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   704 ;15.415 ;10.000
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):  NULL ;  NULL ;  NULL
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   722 ; 0.106 ; 0.200
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  5716 ; 0.012 ; 0.020
REMARK   3   GENERAL PLANES OTHERS             (A):  1036 ; 0.001 ; 0.020
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  1006 ; 0.214 ; 0.200
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):    23 ; 0.138 ; 0.200
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  2369 ; 0.184 ; 0.200
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   304 ; 0.184 ; 0.200
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL
REMARK   3
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  2470 ; 3.776 ; 2.915
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  2470 ; 3.760 ; 2.914
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  3084 ; 4.704 ; 5.214
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  3085 ; 4.705 ; 5.216
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  2328 ; 6.051 ; 3.536
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  2329 ; 6.050 ; 3.538
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  3476 ; 8.644 ; 6.165
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  3477 ; 8.643 ; 6.166
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL
REMARK   3
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL
REMARK   3
REMARK   3  NCS RESTRAINTS STATISTICS
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : 1
REMARK   3
REMARK   3  NCS GROUP NUMBER               : 1
REMARK   3     CHAIN NAMES                    : A
REMARK   3     NUMBER OF COMPONENTS NCS GROUP : 1
REMARK   3       COMPONENT C  SSSEQI  TO  C   SSSEQI   CODE
REMARK   3           1     A      6       A     314    NULL
REMARK   3           1     A      6       A     314    NULL
REMARK   3                   GROUP CHAIN        COUNT   RMS     WEIGHT
REMARK   3
REMARK   3  TLS DETAILS
REMARK   3   NUMBER OF TLS GROUPS  : NULL
REMARK   3
REMARK   3  BULK SOLVENT MODELLING.
REMARK   3   METHOD USED : MASK BULK SOLVENT
REMARK   3   PARAMETERS FOR MASK CALCULATION
REMARK   3   VDW PROBE RADIUS   : 1.20
REMARK   3   ION PROBE RADIUS   : 0.80
REMARK   3   SHRINKAGE RADIUS   : 0.80
REMARK   3
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR
REMARK   3  RIDING POSITIONS
REMARK   4
REMARK   4 8OIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-23.
REMARK 100 THE DEPOSITION ID IS D_1292128967.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION
REMARK 200  DATE OF DATA COLLECTION        : 08-OCT-21
REMARK 200  TEMPERATURE           (KELVIN) : 100
REMARK 200  PH                             : 5.5
REMARK 200  NUMBER OF CRYSTALS USED        : 1
REMARK 200
REMARK 200  SYNCHROTRON              (Y/N) : Y
REMARK 200  RADIATION SOURCE               : PETRA III, DESY
REMARK 200  BEAMLINE                       : P11
REMARK 200  X-RAY GENERATOR MODEL          : NULL
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.033210
REMARK 200  MONOCHROMATOR                  : NULL
REMARK 200  OPTICS                         : NULL
REMARK 200
REMARK 200  DETECTOR TYPE                  : PIXEL
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS EIGER2 X 16M
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200  DATA SCALING SOFTWARE          : AIMLESS
REMARK 200
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 44854
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.990
REMARK 200  RESOLUTION RANGE LOW       (A) : 42.050
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200  COMPLETENESS FOR RANGE     (%) : 94.9
REMARK 200  DATA REDUNDANCY                : 3.400
REMARK 200  R MERGE                    (I) : 0.07100
REMARK 200  R SYM                      (I) : NULL
REMARK 200   FOR THE DATA SET  : 9.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.92
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 42.05
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL
REMARK 200  DATA REDUNDANCY IN SHELL       : 3.30
REMARK 200  R MERGE FOR SHELL          (I) : 0.05300
REMARK 200  R SYM FOR SHELL            (I) : NULL
REMARK 200   FOR SHELL         : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS   (%): 50.63
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MG/ML SPL, INDEX SCREEN CONDITION 78
REMARK 280  (0.2 M AMMONIUM ACETATE, 0.1 M BIS-TRIS, 25% PEG 3350), PH 5.5,
REMARK 280  VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290      SYMOP   SYMMETRY
REMARK 290     NNNMMM   OPERATOR
REMARK 290       1555   X,Y,Z
REMARK 290       2555   -X,Y+1/2,-Z
REMARK 290
REMARK 290     WHERE NNN -> OPERATOR NUMBER
REMARK 290           MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       44.48300
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465   M RES C SSSEQI
REMARK 465     MET A   -13
REMARK 465     GLY A   -12
REMARK 465     SER A   -11
REMARK 465     SER A   -10
REMARK 465     HIS A    -9
REMARK 465     HIS A    -8
REMARK 465     HIS A    -7
REMARK 465     HIS A    -6
REMARK 465     HIS A    -5
REMARK 465     HIS A    -4
REMARK 465     SER A    -3
REMARK 465     GLN A    -2
REMARK 465     ASP A    -1
REMARK 465     PRO A     0
REMARK 465     MET A     1
REMARK 465     THR A     2
REMARK 465     ASP A     3
REMARK 465     SER A     4
REMARK 465     THR A     5
REMARK 465     ALA A   315
REMARK 465     MET B   -13
REMARK 465     GLY B   -12
REMARK 465     SER B   -11
REMARK 465     SER B   -10
REMARK 465     HIS B    -9
REMARK 465     HIS B    -8
REMARK 465     HIS B    -7
REMARK 465     HIS B    -6
REMARK 465     HIS B    -5
REMARK 465     HIS B    -4
REMARK 465     SER B    -3
REMARK 465     GLN B    -2
REMARK 465     ASP B    -1
REMARK 465     PRO B     0
REMARK 465     MET B     1
REMARK 465     THR B     2
REMARK 465     ASP B     3
REMARK 465     SER B     4
REMARK 465     THR B     5
REMARK 465     ALA B   315
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE
REMARK 500  HH11  ARG A    10     HG   SER A   292              1.20
REMARK 500   HG1  THR B   279     H    ILE B   280              1.35
REMARK 500  HH11  ARG B    60     O    HOH B   407              1.59
REMARK 500   O    HOH A   564     O    HOH A   576              2.12
REMARK 500   O    HOH B   401     O    HOH B   532              2.14
REMARK 500   OD2  ASP B   202     O    HOH B   401              2.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION
REMARK 500    GLU B 275   CD    GLU B 275   OE1     0.083
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500  M RES CSSEQI        PSI       PHI
REMARK 500    ARG A  77       69.93   -154.75
REMARK 500    ARG A  80      158.33    -47.09
REMARK 500    ASP A  98     -159.60   -162.90
REMARK 500    PRO A 131       33.80    -96.87
REMARK 500    SER A 159     -111.85     65.27
REMARK 500    TYR A 188       66.25     27.89
REMARK 500    LEU A 208      -57.02     73.87
REMARK 500    ARG B  77       67.72   -151.19
REMARK 500    ALA B  82      113.32    -35.73
REMARK 500    ASP B  98     -166.07   -162.58
REMARK 500    PRO B 131       35.44    -99.83
REMARK 500    SER B 159     -113.77     59.50
REMARK 500    TYR B 188       57.34     31.73
REMARK 500    LEU B 208      -59.99     71.91
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500  M RES CSSEQI        RMS     TYPE
REMARK 500    ARG A  51         0.09    SIDE CHAIN
REMARK 500    ARG B 254         0.08    SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525  M RES CSSEQI
REMARK 525    HOH A 577        DISTANCE =  6.21 ANGSTROMS
REMARK 525    HOH A 578        DISTANCE =  6.43 ANGSTROMS
DBREF1 8OIM A    1   315  UNP                  A0A0N7I173_SPHMC
DBREF2 8OIM A     A0A0N7I173                          1         315
DBREF1 8OIM B    1   315  UNP                  A0A0N7I173_SPHMC
DBREF2 8OIM B     A0A0N7I173                          1         315
SEQADV 8OIM MET A  -13  UNP  A0A0N7I17           INITIATING METHIONINE
SEQADV 8OIM GLY A  -12  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM SER A  -11  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM SER A  -10  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM HIS A   -9  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM HIS A   -8  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM HIS A   -7  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM HIS A   -6  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM HIS A   -5  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM HIS A   -4  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM SER A   -3  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM GLN A   -2  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM ASP A   -1  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM PRO A    0  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM ILE A  120  UNP  A0A0N7I17 VAL   120 CONFLICT
SEQADV 8OIM MET B  -13  UNP  A0A0N7I17           INITIATING METHIONINE
SEQADV 8OIM GLY B  -12  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM SER B  -11  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM SER B  -10  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM HIS B   -9  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM HIS B   -8  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM HIS B   -7  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM HIS B   -6  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM HIS B   -5  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM HIS B   -4  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM SER B   -3  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM GLN B   -2  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM ASP B   -1  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM PRO B    0  UNP  A0A0N7I17           EXPRESSION TAG
SEQADV 8OIM ILE B  120  UNP  A0A0N7I17 VAL   120 CONFLICT
SEQRES   1 A  329  MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP
SEQRES   2 A  329  PRO MET THR ASP SER THR THR HIS TYR THR ARG PRO ASP
SEQRES   3 A  329  VAL ALA ALA PHE LEU ALA PHE LEU ASN ALA GLN GLU GLY
SEQRES   4 A  329  PRO LYS MET GLU GLU MET PRO PRO ALA GLY ALA ARG GLU
SEQRES   5 A  329  MET MET ARG VAL MET GLY GLN LEU ALA ASP VAL PRO ARG
SEQRES   6 A  329  GLY GLU ILE ALA LYS VAL GLU ASP ARG MET ILE PRO GLY
SEQRES   7 A  329  PRO ASP GLY ASP ILE PRO ILE ARG LEU TYR ASP ASN ARG
SEQRES   8 A  329  PRO ASP ARG GLU ALA GLY PRO VAL MET VAL PHE TYR HIS
SEQRES   9 A  329  GLY GLY GLY TRP VAL ILE GLY ASP LEU GLU THR HIS ASP
SEQRES  10 A  329  PRO TYR CYS ALA GLU ALA ALA ARG ILE LEU ASP MET PRO
SEQRES  11 A  329  VAL ILE ALA ILE ASP TYR ARG LEU ALA PRO GLU HIS PRO
SEQRES  12 A  329  PHE PRO ALA ALA PRO ILE ASP CYS GLU ALA ALA THR ARG
SEQRES  13 A  329  TRP VAL ALA ASP ASN ILE ALA CYS THR GLY LEU VAL LEU
SEQRES  14 A  329  SER GLY ASP SER ALA GLY GLY ASN LEU THR ILE VAL THR
SEQRES  15 A  329  ALA LEU ALA LEU ARG ASP GLU PRO ALA ALA LYS PRO VAL
SEQRES  16 A  329  ILE ALA ILE HIS PRO ILE TYR PRO ALA VAL THR THR HIS
SEQRES  17 A  329  ASN ASP TRP GLN SER TYR ARG ASP PHE GLY GLU GLY HIS
SEQRES  18 A  329  LEU LEU THR GLU GLY SER MET THR TRP PHE GLY ASN HIS
SEQRES  19 A  329  TYR ALA ALA ASP PRO ALA ASP ARG ARG ALA ALA PRO ILE
SEQRES  20 A  329  ASP PHE PRO ALA ASP GLY LEU PRO PRO THR LEU LEU ILE
SEQRES  21 A  329  THR ALA SER LEU ASP PRO LEU ARG ASP GLN GLY ARG ALA
SEQRES  22 A  329  TYR ALA ALA LYS LEU ILE GLU ALA GLY VAL PRO THR THR
SEQRES  23 A  329  TYR ARG GLU ALA LYS GLY THR ILE HIS GLY TYR ILE CYS
SEQRES  24 A  329  LEU ALA GLN GLY ILE PRO SER ALA LYS ASP ASP ILE ARG
SEQRES  25 A  329  GLY ALA LEU THR VAL LEU LYS ALA ILE VAL ALA GLU ALA
SEQRES  26 A  329  THR GLY ALA ALA
SEQRES   1 B  329  MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP
SEQRES   2 B  329  PRO MET THR ASP SER THR THR HIS TYR THR ARG PRO ASP
SEQRES   3 B  329  VAL ALA ALA PHE LEU ALA PHE LEU ASN ALA GLN GLU GLY
SEQRES   4 B  329  PRO LYS MET GLU GLU MET PRO PRO ALA GLY ALA ARG GLU
SEQRES   5 B  329  MET MET ARG VAL MET GLY GLN LEU ALA ASP VAL PRO ARG
SEQRES   6 B  329  GLY GLU ILE ALA LYS VAL GLU ASP ARG MET ILE PRO GLY
SEQRES   7 B  329  PRO ASP GLY ASP ILE PRO ILE ARG LEU TYR ASP ASN ARG
SEQRES   8 B  329  PRO ASP ARG GLU ALA GLY PRO VAL MET VAL PHE TYR HIS
SEQRES   9 B  329  GLY GLY GLY TRP VAL ILE GLY ASP LEU GLU THR HIS ASP
SEQRES  10 B  329  PRO TYR CYS ALA GLU ALA ALA ARG ILE LEU ASP MET PRO
SEQRES  11 B  329  VAL ILE ALA ILE ASP TYR ARG LEU ALA PRO GLU HIS PRO
SEQRES  12 B  329  PHE PRO ALA ALA PRO ILE ASP CYS GLU ALA ALA THR ARG
SEQRES  13 B  329  TRP VAL ALA ASP ASN ILE ALA CYS THR GLY LEU VAL LEU
SEQRES  14 B  329  SER GLY ASP SER ALA GLY GLY ASN LEU THR ILE VAL THR
SEQRES  15 B  329  ALA LEU ALA LEU ARG ASP GLU PRO ALA ALA LYS PRO VAL
SEQRES  16 B  329  ILE ALA ILE HIS PRO ILE TYR PRO ALA VAL THR THR HIS
SEQRES  17 B  329  ASN ASP TRP GLN SER TYR ARG ASP PHE GLY GLU GLY HIS
SEQRES  18 B  329  LEU LEU THR GLU GLY SER MET THR TRP PHE GLY ASN HIS
SEQRES  19 B  329  TYR ALA ALA ASP PRO ALA ASP ARG ARG ALA ALA PRO ILE
SEQRES  20 B  329  ASP PHE PRO ALA ASP GLY LEU PRO PRO THR LEU LEU ILE
SEQRES  21 B  329  THR ALA SER LEU ASP PRO LEU ARG ASP GLN GLY ARG ALA
SEQRES  22 B  329  TYR ALA ALA LYS LEU ILE GLU ALA GLY VAL PRO THR THR
SEQRES  23 B  329  TYR ARG GLU ALA LYS GLY THR ILE HIS GLY TYR ILE CYS
SEQRES  24 B  329  LEU ALA GLN GLY ILE PRO SER ALA LYS ASP ASP ILE ARG
SEQRES  25 B  329  GLY ALA LEU THR VAL LEU LYS ALA ILE VAL ALA GLU ALA
SEQRES  26 B  329  THR GLY ALA ALA
FORMUL   3  HOH   *360(H2 O)
HELIX    1 AA1 ARG A   10  ALA A   22  1                                  13
HELIX    2 AA2 LYS A   27  MET A   31  5                                   5
HELIX    3 AA3 PRO A   32  ASP A   48  1                                  17
HELIX    4 AA4 HIS A  102  ASP A  114  1                                  13
HELIX    5 AA5 PRO A  131  ILE A  148  1                                  18
HELIX    6 AA6 SER A  159  GLU A  175  1                                  17
HELIX    7 AA7 TRP A  197  GLY A  204  1                                   8
HELIX    8 AA8 THR A  210  ALA A  222  1                                  13
HELIX    9 AA9 ALA A  231  PHE A  235  5                                   5
HELIX   10 AB1 LEU A  253  ALA A  267  1                                  15
HELIX   11 AB2 GLY A  282  LEU A  286  5                                   5
HELIX   12 AB3 SER A  292  GLY A  313  1                                  22
HELIX   13 AB4 ARG B   10  ALA B   22  1                                  13
HELIX   14 AB5 LYS B   27  MET B   31  5                                   5
HELIX   15 AB6 PRO B   32  ASP B   48  1                                  17
HELIX   16 AB7 HIS B  102  ASP B  114  1                                  13
HELIX   17 AB8 PRO B  131  ILE B  148  1                                  18
HELIX   18 AB9 SER B  159  GLU B  175  1                                  17
HELIX   19 AC1 TRP B  197  GLY B  204  1                                   8
HELIX   20 AC2 THR B  210  ALA B  222  1                                  13
HELIX   21 AC3 ALA B  231  PHE B  235  5                                   5
HELIX   22 AC4 LEU B  253  ALA B  267  1                                  15
HELIX   23 AC5 GLY B  282  LEU B  286  5                                   5
HELIX   24 AC6 SER B  292  GLY B  313  1                                  22
SHEET    1 AA1 6 LYS A  56  GLY A  64  0
SHEET    2 AA1 6 GLY A  67  ASP A  75 -1  O  LEU A  73   N  GLU A  58
SHEET    3 AA1 6 VAL A 117  ILE A 120 -1  O  VAL A 117   N  TYR A  74
SHEET    4 AA1 6 PRO A  84  TYR A  89  1  N  MET A  86   O  ILE A 118
SHEET    5 AA1 6 GLY A 152  ASP A 158  1  O  VAL A 154   N  VAL A  87
SHEET    6 AA1 6 VAL A 181  ILE A 187  1  O  ILE A 187   N  GLY A 157
SHEET    1 AA2 4 THR A 243  ALA A 248  0
SHEET    2 AA2 4 THR A 271  ALA A 276  1  O  ALA A 276   N  THR A 247
SHEET    3 AA2 4 THR B 271  ALA B 276 -1  O  TYR B 273   N  THR A 271
SHEET    4 AA2 4 THR B 243  ALA B 248  1  N  THR B 247   O  ALA B 276
SHEET    1 AA3 6 LYS B  56  ILE B  62  0
SHEET    2 AA3 6 ILE B  69  ASP B  75 -1  O  ILE B  71   N  ARG B  60
SHEET    3 AA3 6 VAL B 117  ILE B 120 -1  O  ALA B 119   N  ARG B  72
SHEET    4 AA3 6 PRO B  84  TYR B  89  1  N  MET B  86   O  ILE B 118
SHEET    5 AA3 6 GLY B 152  ASP B 158  1  O  VAL B 154   N  VAL B  87
SHEET    6 AA3 6 VAL B 181  ILE B 187  1  O  ILE B 187   N  GLY B 157
CISPEP   1 ALA A  125    PRO A  126          0         3.00
CISPEP   2 PHE A  130    PRO A  131          0         2.21
CISPEP   3 ALA B  125    PRO B  126          0         0.10
CISPEP   4 PHE B  130    PRO B  131          0         1.81
CRYST1   60.812   88.966   65.627  90.00  96.41  90.00 P 1 21 1      4
ORIGX1      1.000000  0.000000  0.000000        0.00000
ORIGX2      0.000000  1.000000  0.000000        0.00000
ORIGX3      0.000000  0.000000  1.000000        0.00000
SCALE1      0.016444  0.000000  0.001848        0.00000
SCALE2      0.000000  0.011240  0.000000        0.00000
SCALE3      0.000000  0.000000  0.015334        0.00000
TER    4631      ALA A 314
TER    9262      ALA B 314
MASTER      378    0    0   24   16    0    0    6 5034    2    0   52
END