longtext: 9RD2-pdb

content
HEADER    HYDROLASE                               30-MAY-25   9RD2
TITLE     CRYSTAL STRUCTURE OF A LEAF-BRANCH COMPOST CUTINASE VARIANT (LCC_ICCG)
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: LEAF-BRANCH COMPOST CUTINASE;
COMPND   3 CHAIN: A;
COMPND   4 SYNONYM: LC-CUTINASE,LCC,PET-DIGESTING ENZYME,POLY(ETHYLENE
COMPND   5 TEREPHTHALATE) HYDROLASE,PET HYDROLASE,PETASE;
COMPND   6 EC: 3.1.1.74,3.1.1.101;
COMPND   7 ENGINEERED: YES;
COMPND   8 MUTATION: YES
SOURCE    MOL_ID: 1;
SOURCE   2 ORGANISM_SCIENTIFIC: UNIDENTIFIED PROKARYOTIC ORGANISM;
SOURCE   3 ORGANISM_TAXID: 2725;
SOURCE   4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS    PETASE, PET-DEGRADING, HYDROLASE
EXPDTA    X-RAY DIFFRACTION
AUTHOR    C.KOSINAS,K.MAKRYNIOTIS,C.TRANTZAS,E.NIKOLAIVITS,M.DIMAROGONA,
AUTHOR   2 E.TOPAKAS
REVDAT   1   10-JUN-26 9RD2    0
JRNL        AUTH   C.KOSINAS,K.MAKRYNIOTIS,E.NIKOLAIVITS,M.DIMAROGONA,E.TOPAKAS
JRNL        TITL   CRYSTAL STRUCTURE OF A LEAF-BRANCH COMPOST CUTINASE VARIANT
JRNL        TITL 2 (LCC_ICCG)
JRNL        REF    TO BE PUBLISHED
JRNL        REFN
REMARK   2
REMARK   2 RESOLUTION.    1.64 ANGSTROMS.
REMARK   3
REMARK   3 REFINEMENT.
REMARK   3   PROGRAM     : REFMAC 5.8.0419
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN
REMARK   3
REMARK   3    REFINEMENT TARGET : NULL
REMARK   3
REMARK   3  DATA USED IN REFINEMENT.
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 47.63
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.3
REMARK   3   NUMBER OF REFLECTIONS             : 35866
REMARK   3
REMARK   3  FIT TO DATA USED IN REFINEMENT.
REMARK   3   CROSS-VALIDATION METHOD          : FREE R-VALUE
REMARK   3   FREE R VALUE TEST SET SELECTION  : NULL
REMARK   3   R VALUE     (WORKING + TEST SET) : NULL
REMARK   3   R VALUE            (WORKING SET) : 0.171
REMARK   3   FREE R VALUE                     : 0.212
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.916
REMARK   3   FREE R VALUE TEST SET COUNT      : 1763
REMARK   3
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.
REMARK   3   TOTAL NUMBER OF BINS USED           : 20
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.64
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.68
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 2480
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 98.93
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3360
REMARK   3   BIN FREE R VALUE SET COUNT          : 114
REMARK   3   BIN FREE R VALUE                    : 0.3330
REMARK   3
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK   3   PROTEIN ATOMS            : 1939
REMARK   3   NUCLEIC ACID ATOMS       : 0
REMARK   3   HETEROGEN ATOMS          : 24
REMARK   3   SOLVENT ATOMS            : 113
REMARK   3
REMARK   3  B VALUES.
REMARK   3   FROM WILSON PLOT           (A**2) : NULL
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 28.86
REMARK   3   OVERALL ANISOTROPIC B VALUE.
REMARK   3    B11 (A**2) : -0.03600
REMARK   3    B22 (A**2) : -0.03600
REMARK   3    B33 (A**2) : 0.07300
REMARK   3    B12 (A**2) : 0.00000
REMARK   3    B13 (A**2) : 0.00000
REMARK   3    B23 (A**2) : 0.00000
REMARK   3
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.
REMARK   3   ESU BASED ON R VALUE                            (A): 0.082
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.088
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.058
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.745
REMARK   3
REMARK   3 CORRELATION COEFFICIENTS.
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.972
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.939
REMARK   3
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  2051 ; 0.010 ; 0.012
REMARK   3   BOND LENGTHS OTHERS               (A):  1877 ; 0.001 ; 0.016
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  2810 ; 1.797 ; 1.786
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  4308 ; 0.640 ; 1.722
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   268 ; 6.964 ; 5.000
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):    16 ;11.245 ; 5.000
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   288 ;11.646 ;10.000
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):  NULL ;  NULL ;  NULL
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   316 ; 0.095 ; 0.200
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  2519 ; 0.010 ; 0.020
REMARK   3   GENERAL PLANES OTHERS             (A):   503 ; 0.001 ; 0.020
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):   407 ; 0.225 ; 0.200
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):    26 ; 0.256 ; 0.200
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  1058 ; 0.185 ; 0.200
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   104 ; 0.136 ; 0.200
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL
REMARK   3
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1051 ; 2.682 ; 2.843
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  1051 ; 2.680 ; 2.843
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  1320 ; 3.411 ; 5.090
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  1321 ; 3.416 ; 5.093
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1000 ; 3.775 ; 3.225
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  1001 ; 3.774 ; 3.228
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1488 ; 5.304 ; 5.733
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  1489 ; 5.302 ; 5.735
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL
REMARK   3
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL
REMARK   3
REMARK   3  NCS RESTRAINTS STATISTICS
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK   3
REMARK   3  TLS DETAILS
REMARK   3   NUMBER OF TLS GROUPS  : NULL
REMARK   3
REMARK   3  BULK SOLVENT MODELLING.
REMARK   3   METHOD USED : MASK BULK SOLVENT
REMARK   3   PARAMETERS FOR MASK CALCULATION
REMARK   3   VDW PROBE RADIUS   : 1.20
REMARK   3   ION PROBE RADIUS   : 0.80
REMARK   3   SHRINKAGE RADIUS   : 0.80
REMARK   3
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR
REMARK   3  RIDING POSITIONS
REMARK   4
REMARK   4 9RD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-25.
REMARK 100 THE DEPOSITION ID IS D_1292147526.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION
REMARK 200  DATE OF DATA COLLECTION        : 30-NOV-24
REMARK 200  TEMPERATURE           (KELVIN) : 100
REMARK 200  PH                             : NULL
REMARK 200  NUMBER OF CRYSTALS USED        : 1
REMARK 200
REMARK 200  SYNCHROTRON              (Y/N) : Y
REMARK 200  RADIATION SOURCE               : MAX IV
REMARK 200  BEAMLINE                       : BIOMAX
REMARK 200  X-RAY GENERATOR MODEL          : NULL
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.7290
REMARK 200  MONOCHROMATOR                  : NULL
REMARK 200  OPTICS                         : NULL
REMARK 200
REMARK 200  DETECTOR TYPE                  : PIXEL
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS EIGER X 16M
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200  DATA SCALING SOFTWARE          : AIMLESS
REMARK 200
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 35907
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.640
REMARK 200  RESOLUTION RANGE LOW       (A) : 47.626
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.5
REMARK 200  DATA REDUNDANCY                : 25.90
REMARK 200  R MERGE                    (I) : 0.10800
REMARK 200  R SYM                      (I) : NULL
REMARK 200   FOR THE DATA SET  : 17.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.98
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 47.58
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL
REMARK 200  DATA REDUNDANCY IN SHELL       : 17.60
REMARK 200  R MERGE FOR SHELL          (I) : 0.06100
REMARK 200  R SYM FOR SHELL            (I) : NULL
REMARK 200   FOR SHELL         : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS   (%): 50.44
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM NITRATE, 20% (W/V) PEG
REMARK 280  3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290      SYMOP   SYMMETRY
REMARK 290     NNNMMM   OPERATOR
REMARK 290       1555   X,Y,Z
REMARK 290       2555   -X,-Y,Z+1/2
REMARK 290       3555   -Y+1/2,X+1/2,Z+1/4
REMARK 290       4555   Y+1/2,-X+1/2,Z+3/4
REMARK 290       5555   -X+1/2,Y+1/2,-Z+1/4
REMARK 290       6555   X+1/2,-Y+1/2,-Z+3/4
REMARK 290       7555   Y,X,-Z
REMARK 290       8555   -Y,-X,-Z+1/2
REMARK 290
REMARK 290     WHERE NNN -> OPERATOR NUMBER
REMARK 290           MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       36.86900
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000       44.04050
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000       44.04050
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       18.43450
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000       44.04050
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000       44.04050
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       55.30350
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000       44.04050
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       44.04050
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       18.43450
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000       44.04050
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       44.04050
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000       55.30350
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000       36.86900
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465   M RES C SSSEQI
REMARK 465     MET A    35
REMARK 465     GLN A   293
REMARK 465     LEU A   294
REMARK 465     GLU A   295
REMARK 465     HIS A   296
REMARK 465     HIS A   297
REMARK 465     HIS A   298
REMARK 465     HIS A   299
REMARK 465     HIS A   300
REMARK 465     HIS A   301
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE
REMARK 500   HG1  THR A   198     H    VAL A   200              1.27
REMARK 500   HG1  THR A   287     H    ASN A   289              1.27
REMARK 500   HG1  THR A    82     H    LEU A    84              1.34
REMARK 500   H    ARG A    65     O    HOH A   501              1.53
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE
REMARK 500   CE1  TYR A    95     HH   TYR A    95     7555     1.21
REMARK 500   CE1  TYR A    95     OH   TYR A    95     7555     1.98
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500  M RES CSSEQI        PSI       PHI
REMARK 500    THR A  96       -4.45     74.95
REMARK 500    SER A 165     -125.33     67.79
REMARK 500    THR A 188       58.85     35.39
REMARK 500    HIS A 218      -85.29   -126.65
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500  M RES CSSEQI        RMS     TYPE
REMARK 500    ARG A 131         0.10    SIDE CHAIN
REMARK 500    ARG A 151         0.09    SIDE CHAIN
REMARK 500    ARG A 271         0.16    SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
DBREF  9RD2 A   36   293  UNP    G9BY57   PETH_UNKP       36    293
SEQADV 9RD2 MET A   35  UNP  G9BY57              INITIATING METHIONINE
SEQADV 9RD2 GLY A  127  UNP  G9BY57    TYR   127 ENGINEERED MUTATION
SEQADV 9RD2 CYS A  238  UNP  G9BY57    ASP   238 ENGINEERED MUTATION
SEQADV 9RD2 ILE A  243  UNP  G9BY57    PHE   243 ENGINEERED MUTATION
SEQADV 9RD2 CYS A  283  UNP  G9BY57    SER   283 ENGINEERED MUTATION
SEQADV 9RD2 LEU A  294  UNP  G9BY57              EXPRESSION TAG
SEQADV 9RD2 GLU A  295  UNP  G9BY57              EXPRESSION TAG
SEQADV 9RD2 HIS A  296  UNP  G9BY57              EXPRESSION TAG
SEQADV 9RD2 HIS A  297  UNP  G9BY57              EXPRESSION TAG
SEQADV 9RD2 HIS A  298  UNP  G9BY57              EXPRESSION TAG
SEQADV 9RD2 HIS A  299  UNP  G9BY57              EXPRESSION TAG
SEQADV 9RD2 HIS A  300  UNP  G9BY57              EXPRESSION TAG
SEQADV 9RD2 HIS A  301  UNP  G9BY57              EXPRESSION TAG
SEQRES   1 A  267  MET SER ASN PRO TYR GLN ARG GLY PRO ASN PRO THR ARG
SEQRES   2 A  267  SER ALA LEU THR ALA ASP GLY PRO PHE SER VAL ALA THR
SEQRES   3 A  267  TYR THR VAL SER ARG LEU SER VAL SER GLY PHE GLY GLY
SEQRES   4 A  267  GLY VAL ILE TYR TYR PRO THR GLY THR SER LEU THR PHE
SEQRES   5 A  267  GLY GLY ILE ALA MET SER PRO GLY TYR THR ALA ASP ALA
SEQRES   6 A  267  SER SER LEU ALA TRP LEU GLY ARG ARG LEU ALA SER HIS
SEQRES   7 A  267  GLY PHE VAL VAL LEU VAL ILE ASN THR ASN SER ARG PHE
SEQRES   8 A  267  ASP GLY PRO ASP SER ARG ALA SER GLN LEU SER ALA ALA
SEQRES   9 A  267  LEU ASN TYR LEU ARG THR SER SER PRO SER ALA VAL ARG
SEQRES  10 A  267  ALA ARG LEU ASP ALA ASN ARG LEU ALA VAL ALA GLY HIS
SEQRES  11 A  267  SER MET GLY GLY GLY GLY THR LEU ARG ILE ALA GLU GLN
SEQRES  12 A  267  ASN PRO SER LEU LYS ALA ALA VAL PRO LEU THR PRO TRP
SEQRES  13 A  267  HIS THR ASP LYS THR PHE ASN THR SER VAL PRO VAL LEU
SEQRES  14 A  267  ILE VAL GLY ALA GLU ALA ASP THR VAL ALA PRO VAL SER
SEQRES  15 A  267  GLN HIS ALA ILE PRO PHE TYR GLN ASN LEU PRO SER THR
SEQRES  16 A  267  THR PRO LYS VAL TYR VAL GLU LEU CYS ASN ALA SER HIS
SEQRES  17 A  267  ILE ALA PRO ASN SER ASN ASN ALA ALA ILE SER VAL TYR
SEQRES  18 A  267  THR ILE SER TRP MET LYS LEU TRP VAL ASP ASN ASP THR
SEQRES  19 A  267  ARG TYR ARG GLN PHE LEU CYS ASN VAL ASN ASP PRO ALA
SEQRES  20 A  267  LEU CYS ASP PHE ARG THR ASN ASN ARG HIS CYS GLN LEU
SEQRES  21 A  267  GLU HIS HIS HIS HIS HIS HIS
HET    IMD  A 401      10
HET    NO3  A 402       4
HET    NO3  A 403       4
HET    PEG  A 404      17
HET    EDO  A 405      10
HETNAM     IMD IMIDAZOLE
HETNAM     NO3 NITRATE ION
HETNAM     PEG DI(HYDROXYETHYL)ETHER
HETNAM     EDO 1,2-ETHANEDIOL
HETSYN     EDO ETHYLENE GLYCOL
FORMUL   2  IMD    C3 H5 N2 1+
FORMUL   3  NO3    2(N O3 1-)
FORMUL   5  PEG    C4 H10 O3
FORMUL   6  EDO    C2 H6 O2
FORMUL   7  HOH   *113(H2 O)
HELIX    1 AA1 SER A   48  ALA A   52  5                                   5
HELIX    2 AA2 SER A   64  VAL A   68  5                                   5
HELIX    3 AA3 ASP A   98  SER A  101  5                                   4
HELIX    4 AA4 LEU A  102  HIS A  112  1                                  11
HELIX    5 AA5 GLY A  127  SER A  145  1                                  19
HELIX    6 AA6 PRO A  147  ALA A  152  1                                   6
HELIX    7 AA7 SER A  165  ASN A  178  1                                  14
HELIX    8 AA8 HIS A  218  LEU A  226  1                                   9
HELIX    9 AA9 ILE A  243  SER A  247  5                                   5
HELIX   10 AB1 ASN A  249  ASP A  265  1                                  17
HELIX   11 AB2 ASP A  267  LEU A  274  5                                   8
SHEET    1 AA1 6 SER A  57  VAL A  63  0
SHEET    2 AA1 6 GLY A  74  THR A  80 -1  O  GLY A  74   N  VAL A  63
SHEET    3 AA1 6 VAL A 115  ILE A 119 -1  O  VAL A 116   N  TYR A  77
SHEET    4 AA1 6 PHE A  86  SER A  92  1  N  GLY A  87   O  VAL A 115
SHEET    5 AA1 6 LEU A 154  HIS A 164  1  O  ASP A 155   N  PHE A  86
SHEET    6 AA1 6 ALA A 184  LEU A 187  1  O  LEU A 187   N  GLY A 163
SHEET    1 AA2 3 VAL A 202  ALA A 207  0
SHEET    2 AA2 3 LYS A 232  LEU A 237  1  O  VAL A 235   N  GLY A 206
SHEET    3 AA2 3 LEU A 282  THR A 287 -1  O  ARG A 286   N  TYR A 234
SSBOND   1 CYS A  238    CYS A  283                          1555   1555  2.11
SSBOND   2 CYS A  275    CYS A  292                          1555   1555  2.05
CRYST1   88.081   88.081   73.738  90.00  90.00  90.00 P 41 21 2     8
ORIGX1      1.000000  0.000000  0.000000        0.00000
ORIGX2      0.000000  1.000000  0.000000        0.00000
ORIGX3      0.000000  0.000000  1.000000        0.00000
SCALE1      0.011353  0.000000  0.000000        0.00000
SCALE2      0.000000  0.011353  0.000000        0.00000
SCALE3      0.000000  0.000000  0.013562        0.00000
TER    3904      CYS A 292
MASTER      339    0    5   11    9    0    0    6 2076    1   49   21
END