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HEADER HYDROLASE 11-AUG-24 9J5D
TITLE ESTS1 PHTHALATE ESTER DEGRADING ESTERASE FROM SULFOBACILLUS
TITLE 2 ACIDOPHILUS IN COMPLEX WITH DIMETHYL PHTHALATE ON SURFACE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ALPHA/BETA HYDROLASE FOLD-3 DOMAIN-CONTAINING PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: ESTS1 PHTHALATE ESTER DEGRADARING ESTERASE;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SULFOBACILLUS ACIDOPHILUS DSM 10332;
SOURCE 3 ORGANISM_TAXID: 679936;
SOURCE 4 GENE: SULAC_0033;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS ESTS1, PHTHALATE ESTER DEGRADING ESTERASE, DIMETHYL PHTHALATE,
KEYWDS 2 HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.VERMA,P.KUMAR
REVDAT 1 25-DEC-24 9J5D 0
JRNL AUTH S.VERMA,S.CHOUDHARY,K.AMITH KUMAR,J.K.MAHTO,A.K.VAMSI K,
JRNL AUTH 2 I.MISHRA,V.B.PRAKASH,D.SIRCAR,S.TOMAR,A.KUMAR SHARMA,
JRNL AUTH 3 J.SINGLA,P.KUMAR
JRNL TITL MECHANISTIC AND STRUCTURAL INSIGHTS INTO ESTS1 ESTERASE: A
JRNL TITL 2 POTENT BROAD-SPECTRUM PHTHALATE DIESTER DEGRADING ENZYME.
JRNL REF STRUCTURE 2024
JRNL REFN ISSN 0969-2126
JRNL PMID 39642872
JRNL DOI 10.1016/J.STR.2024.11.006
REMARK 2
REMARK 2 RESOLUTION. 1.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0352
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.56
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 47678
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE
REMARK 3 FREE R VALUE TEST SET SELECTION : NULL
REMARK 3 R VALUE (WORKING + TEST SET) : NULL
REMARK 3 R VALUE (WORKING SET) : 0.151
REMARK 3 FREE R VALUE : 0.200
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.931
REMARK 3 FREE R VALUE TEST SET COUNT : 2351
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54
REMARK 3 REFLECTION IN BIN (WORKING SET) : 3331
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0
REMARK 3 BIN R VALUE (WORKING SET) : 0.2410
REMARK 3 BIN FREE R VALUE SET COUNT : 180
REMARK 3 BIN FREE R VALUE : 0.2890
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2303
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 44
REMARK 3 SOLVENT ATOMS : 190
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.26
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.70200
REMARK 3 B22 (A**2) : 0.70200
REMARK 3 B33 (A**2) : -2.27600
REMARK 3 B12 (A**2) : 0.35100
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.078
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.726
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2439 ; 0.008 ; 0.012
REMARK 3 BOND LENGTHS OTHERS (A): 2226 ; 0.001 ; 0.016
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3325 ; 1.425 ; 1.657
REMARK 3 BOND ANGLES OTHERS (DEGREES): 5185 ; 0.490 ; 1.557
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 6.049 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ;15.741 ; 5.500
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;14.436 ;10.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.075 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2812 ; 0.008 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 476 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 475 ; 0.225 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): 59 ; 0.233 ; 0.200
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1197 ; 0.182 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 135 ; 0.142 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1204 ; 1.448 ; 0.855
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1205 ; 1.448 ; 0.856
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1504 ; 1.760 ; 1.282
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1505 ; 1.763 ; 1.284
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1235 ; 2.281 ; 1.126
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1236 ; 2.280 ; 1.127
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1817 ; 2.595 ; 1.588
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1818 ; 2.594 ; 1.589
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4665 ; 3.410 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 2
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1 A 304
REMARK 3 RESIDUE RANGE : A 401 A 408
REMARK 3 ORIGIN FOR THE GROUP (A): -12.5212 -37.6821 0.2225
REMARK 3 T TENSOR
REMARK 3 T11: 0.0130 T22: 0.0357
REMARK 3 T33: 0.0574 T12: -0.0042
REMARK 3 T13: 0.0019 T23: 0.0049
REMARK 3 L TENSOR
REMARK 3 L11: 1.3648 L22: 0.7969
REMARK 3 L33: 1.8446 L12: -0.0819
REMARK 3 L13: -0.1728 L23: -0.0996
REMARK 3 S TENSOR
REMARK 3 S11: -0.0265 S12: -0.0406 S13: 0.0055
REMARK 3 S21: 0.0202 S22: 0.0032 S23: -0.0278
REMARK 3 S31: -0.1394 S32: 0.0049 S33: 0.0232
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK BULK SOLVENT
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR
REMARK 3 RIDING POSITIONS
REMARK 4
REMARK 4 9J5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-AUG-24.
REMARK 100 THE DEPOSITION ID IS D_1300050365.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-SEP-22
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.54
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO
REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58638
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500
REMARK 200 RESOLUTION RANGE LOW (A) : 27.700
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 3.020
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : 8.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : 1.300
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 45.43
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, 0.1 M HEPES (PH 7.0),
REMARK 280 JEFFAMINE ED-2001, VAPOR DIFFUSION, TEMPERATURE 293.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z
REMARK 290 3555 -X+Y,-X,Z
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+1/2
REMARK 290 6555 X-Y,X,Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.27300
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.27300
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.27300
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 HIS A -5
REMARK 465 HIS A -4
REMARK 465 HIS A -3
REMARK 465 HIS A -2
REMARK 465 HIS A -1
REMARK 465 HIS A 0
REMARK 465 PRO A 16
REMARK 465 LEU A 17
REMARK 465 ASN A 18
REMARK 465 ARG A 19
REMARK 465 GLU A 20
REMARK 465 GLY A 21
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HD1 HIS A 223 H TRP A 225 1.18
REMARK 500 H GLY A 84 H3 ACE A 407 1.20
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES
REMARK 500 ARG A 72 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PHE A 85 -3.79 75.14
REMARK 500 ASP A 89 -169.74 -165.33
REMARK 500 SER A 154 -121.03 58.89
REMARK 500 TYR A 181 60.49 34.25
REMARK 500 LEU A 201 -58.65 82.59
REMARK 500 TYR A 247 62.60 -110.29
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 251 0.10 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 689 DISTANCE = 5.82 ANGSTROMS
REMARK 525 HOH A 690 DISTANCE = 5.94 ANGSTROMS
DBREF 9J5D A 1 304 UNP G8TV28 G8TV28_SULAD 1 304
SEQADV 9J5D HIS A -5 UNP G8TV28 EXPRESSION TAG
SEQADV 9J5D HIS A -4 UNP G8TV28 EXPRESSION TAG
SEQADV 9J5D HIS A -3 UNP G8TV28 EXPRESSION TAG
SEQADV 9J5D HIS A -2 UNP G8TV28 EXPRESSION TAG
SEQADV 9J5D HIS A -1 UNP G8TV28 EXPRESSION TAG
SEQADV 9J5D HIS A 0 UNP G8TV28 EXPRESSION TAG
SEQRES 1 A 310 HIS HIS HIS HIS HIS HIS MET PRO LEU ASP PRO ARG VAL
SEQRES 2 A 310 GLU GLN PHE LEU ALA GLN MET PRO PRO LEU ASN ARG GLU
SEQRES 3 A 310 GLY LEU SER LEU ALA GLU ALA ARG GLN GLN PHE LYS GLN
SEQRES 4 A 310 GLY ALA LEU LEU LEU ASP GLN MET VAL PRO PRO PRO PRO
SEQRES 5 A 310 VAL ASP THR GLU ASP GLY THR VAL VAL THR THR HIS GLY
SEQRES 6 A 310 PRO VAL ARG ILE ARG ARG TYR ILE PRO ASP ARG LEU ARG
SEQRES 7 A 310 PHE SER HIS PRO LEU VAL PHE TYR HIS GLY GLY GLY PHE
SEQRES 8 A 310 VAL PHE GLY ASP ILE ASP THR HIS HIS GLY LEU VAL ALA
SEQRES 9 A 310 ARG LEU CYS GLN THR VAL GLY ALA THR VAL ILE SER VAL
SEQRES 10 A 310 ASP TYR SER LEU ALA PRO GLU ALA LYS PHE PRO VAL PRO
SEQRES 11 A 310 VAL ALA GLU CYS ILE ASP VAL ALA ARG TRP ALA ALA HIS
SEQRES 12 A 310 GLU ALA PRO GLY TRP GLY LEU LYS PRO SER ILE VAL VAL
SEQRES 13 A 310 ALA GLY ASP SER ALA GLY GLY ASN LEU ALA ALA VAL VAL
SEQRES 14 A 310 SER GLN ARG ALA LYS ASP GLU SER LEU PRO ILE ALA ALA
SEQRES 15 A 310 GLN LEU LEU PHE TYR PRO ALA LEU ASP MET VAL HIS GLU
SEQRES 16 A 310 THR PRO SER LYS ARG ASP PHE ALA ARG GLY TYR LEU LEU
SEQRES 17 A 310 GLU ALA ASP ALA MET GLN TRP PHE GLY GLU GLN TYR LEU
SEQRES 18 A 310 ARG THR PRO ASP ASP VAL SER HIS PRO TRP ALA SER PRO
SEQRES 19 A 310 ALA LEU SER PRO ASP LEU THR GLY LEU PRO PRO ALA LEU
SEQRES 20 A 310 VAL ILE THR ALA GLU TYR ASP PRO LEU ARG ASP GLU GLY
SEQRES 21 A 310 GLU ALA TYR ALA GLU ALA LEU ARG ALA ALA GLY VAL PRO
SEQRES 22 A 310 THR GLU GLN ILE ARG PHE ASP GLY MET ILE HIS GLY PHE
SEQRES 23 A 310 MET THR MET PRO ILE PHE PRO GLN MET GLU ALA ALA ILE
SEQRES 24 A 310 GLU ALA VAL ALA ARG PHE LEU GLU ARG ILE ASP
HET TIK A 401 24
HET EDO A 402 10
HET EDO A 403 10
HET EDO A 404 10
HET EDO A 405 10
HET MLA A 406 9
HET ACE A 407 7
HET EDO A 408 10
HETNAM TIK DIMETHYL BENZENE-1,2-DICARBOXYLATE
HETNAM EDO 1,2-ETHANEDIOL
HETNAM MLA MALONIC ACID
HETNAM ACE ACETYL GROUP
HETSYN TIK DIMETHYL PHTHALATE
HETSYN EDO ETHYLENE GLYCOL
HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID;
HETSYN 2 MLA METHANEDICARBOXYLIC ACID
FORMUL 2 TIK C10 H10 O4
FORMUL 3 EDO 5(C2 H6 O2)
FORMUL 7 MLA C3 H4 O4
FORMUL 8 ACE C2 H4 O
FORMUL 10 HOH *190(H2 O)
HELIX 1 AA1 ASP A 4 MET A 14 1 11
HELIX 2 AA2 SER A 23 VAL A 42 1 20
HELIX 3 AA3 HIS A 93 GLY A 105 1 13
HELIX 4 AA4 PRO A 122 ALA A 139 1 18
HELIX 5 AA5 PRO A 140 GLY A 143 5 4
HELIX 6 AA6 SER A 154 ALA A 167 1 14
HELIX 7 AA7 THR A 190 PHE A 196 1 7
HELIX 8 AA8 GLU A 203 LEU A 215 1 13
HELIX 9 AA9 THR A 217 HIS A 223 5 7
HELIX 10 AB1 SER A 227 SER A 231 5 5
HELIX 11 AB2 LEU A 250 ALA A 264 1 15
HELIX 12 AB3 GLY A 279 MET A 283 5 5
HELIX 13 AB4 PHE A 286 GLU A 301 1 16
SHEET 1 AA1 8 ASP A 48 THR A 56 0
SHEET 2 AA1 8 GLY A 59 ILE A 67 -1 O ARG A 65 N GLU A 50
SHEET 3 AA1 8 VAL A 108 ASP A 112 -1 O VAL A 108 N TYR A 66
SHEET 4 AA1 8 LEU A 77 TYR A 80 1 N PHE A 79 O ILE A 109
SHEET 5 AA1 8 ILE A 148 ASP A 153 1 O VAL A 149 N VAL A 78
SHEET 6 AA1 8 ILE A 174 PHE A 180 1 O ALA A 175 N ILE A 148
SHEET 7 AA1 8 ALA A 240 ALA A 245 1 O LEU A 241 N LEU A 179
SHEET 8 AA1 8 THR A 268 PHE A 273 1 O GLU A 269 N ALA A 240
CISPEP 1 ALA A 116 PRO A 117 0 2.04
CISPEP 2 PHE A 121 PRO A 122 0 -4.05
CRYST1 108.038 108.038 44.546 90.00 90.00 120.00 P 63 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009256 0.005344 0.000000 0.00000
SCALE2 0.000000 0.010688 0.000000 0.00000
SCALE3 0.000000 0.000000 0.022449 0.00000
TER 4632 ASP A 304
MASTER 364 0 8 13 8 0 0 6 2537 1 90 24
END |