Extracel-MCL-phaZ
Relationship
Comment
Extracellular dPHAMCL depolymerases: extracellular medium-chain-length poly(3-hydroxyalkanoate) depolymerases . Could hydrolyze PHO poly(3-hydroxyoctanoate), PHN , and PHPV poly(3-hydroxy-5-phenylvalerate). Extracted from 5_AlphaBeta hydrolase and farther related to Esterase_phb, Esterase_phb_PHAZ, PHAZ7_phb_depolymerase, OHBut_olig_hydro_put or PHB_depolymerase_PhaZ
Database
Interpro : No interpro
PIRSF : No PIRSF
Pdoc : No Pdoc
Pfam : No Pfam
Prints : No Print
EC Number : No EC Number
Sequences
| Peptide in | Fasta |
| Nucleotide in | Fasta |
| Alignment with Multalin | Text only |
| Seed alignment with MAFFT | No colour / coloured with Mview |
| Alignment with MAFFT | No colour / coloured with Mview |
| Dendrogram | The dnd file |
| Gene_locus | Name | Species |
|---|---|---|
| 9delt-a0a0k1qfr6 | Labilithrix luteola. Dipeptidyl aminopeptidase\/acylaminoacyl-peptidase | Labilithrix luteola |
| 9delt-a0a4u1jgs5 | Polyangium fumosum. Plasmid partitioning protein | Polyangium fumosum |
| 9delt-a0a4y6pze3 | Persicimonas caeni. Plasmid partitioning protein | Persicimonas caeni |
| 9delt-a0a7y5kxs1 | Polyangiaceae bacterium. Prolyl oligopeptidase family serine peptidase | Polyangiaceae bacterium |
| 9gamm-a0a1h7f3u1 | Atopomonas hussainii. Plasmid partitioning protein | Atopomonas hussainii |
| 9gamm-a0a2s5tkm7 | Solimonas fluminis. Prolyl oligopeptidase family serine peptidase | Solimonas fluminis |
| 9gamm-a0a2t5mci0 | Stenotrophobium rhamnosiphilum. Plasmid partitioning protein | Stenotrophobium rhamnosiphilum |
| 9gamm-a0a2u3myl7 | Acinetobacter stercoris. Poly(3-hydroxyoctanoate) depolymerase | Acinetobacter stercoris |
| 9gamm-a0a318e2g9 | Sinimarinibacterium flocculans. Esterase | Sinimarinibacterium flocculans |
| 9gamm-a0a3f2v5p6 | Ketobacter sp. Plasmid partitioning protein | Ketobacter sp. |
| 9gamm-a0a3n0vl68 | Stagnimonas aquatica. AlphaBeta_hydrolas | Stagnimonas aquatica |
| 9gamm-a0a3n0vmh1 | Stagnimonas aquatica. Polyhydroxybutyrate depolymerase | Stagnimonas aquatica |
| 9gamm-a0a4v1imz7 | Zooshikella ganghwensis. Plasmid partitioning protein | Zooshikella ganghwensis |
| 9gamm-a0a514bx96 | Lysobacter alkalisoli. Plasmid partitioning protein | Lysobacter alkalisoli |
| 9gamm-a0a853i538 | Endozoicomonas sp. SM1973. Plasmid partitioning protein | Endozoicomonas sp. SM1973 |
| 9gamm-a0a853icm3 | Endozoicomonas sp. SM1973. Prolyl oligopeptidase family serine peptidase | Endozoicomonas sp. SM1973 |
| 9prot-a0a514x0x3 | Bdellovibrio sp. NC01. Dipeptidyl aminopeptidase | Bdellovibrio sp. NC01 |
| 9psed-a0a1g9lky8 | Pseudomonas indica. Plasmid partitioning protein | Pseudomonas indica |
| 9psed-a0a1v0b7s3 | Pseudomonas phragmitis. Plasmid partitioning protein | Pseudomonas phragmitis |
| 9psed-a0a2i0cn71 | Pseudomonas pharmacofabricae. Plasmid partitioning protein | Pseudomonas pharmacofabricae |
| 9psed-a0a385z875 | Pseudomonas cavernae. Plasmid partitioning protein | Pseudomonas cavernae |
| 9sphn-a0a2s8b2x1 | Sphingopyxis lindanitolerans. Plasmid partitioning protein | Sphingopyxis lindanitolerans |
| bdeba-q6mh49 | Bdellovibrio bacteriovorus (strain ATCC 15356 \/ DSM 50701 \/ NCIMB 9529 \/ HD100). Dipeptidyl aminopeptidase\/acylaminoacyl-peptidase | Bdellovibrio bacteriovorus |
| choco-a0a0k1em26 | Chondromyces crocatus. Plasmid partitioning protein | Chondromyces crocatus |
| oikdi-e4ws23 | Oikopleura dioica (Tunicate). Esterase | Oikopleura dioica |
| psea4-u3b3c3 | Pseudomonas alcaligenes (strain ATCC 14909 \/ DSM 50342 \/ JCM 20561 \/ NBRC 14159 \/ NCIMB 9945 \/ NCTC 10367 \/ 1577). Plasmid partitioning protein | Pseudomonas alcaligenes |
| psea4-u3bc36 | Pseudomonas alcaligenes (strain ATCC 14909 \/ DSM 50342 \/ JCM 20561 \/ NBRC 14159 \/ NCIMB 9945 \/ NCTC 10367 \/ 1577). Polyhydroxybutyrate depolymerase | Pseudomonas alcaligenes |
| pseac-q6ufw4 | Pseudomonas alcaligenes phaZ extracellular medium-chain-length poly(3-hydroxyalkanoate) depolymerase gene | Pseudomonas alcaligenes |
| pseal-PHAZ | Pseudomonas alcaligenes Mcl-PHA depolymerase precursor | Pseudomonas alcaligenes |
| psefl-phaz | Pseudomonas fluorescens. Poly(3-hydroxyoctanoate) depolymerase PfPHOase | Pseudomonas fluorescens |
| Substrate | Chemical Nomenclature | Proteins |
|---|---|---|
| P(3HO) | psefl-phaz pseac-q6ufw4 | |
| PHBV | 3-hydroxybutanoic acid\;3-hydroxypentanoic acid | pseac-q6ufw4 |
References (2)
| Title : Molecular characterization of extracellular medium-chain-length poly(3-hydroxyalkanoate) depolymerase genes from Pseudomonas alcaligenes strains - Kim_2005_J.Microbiol_43_285 |
| Author(s) : Kim DY , Kim HC , Kim SY , Rhee YH |
| Ref : J Microbiol , 43 :285 , 2005 |
| Abstract : |
| PubMedSearch : Kim_2005_J.Microbiol_43_285 |
| PubMedID: 15995648 |
| Gene_locus related to this paper: pseac-q6ufw4 , pseal-PHAZ , psefl-phaz |
| Title : Substrate specificities of poly(hydroxyalkanoate)-degrading bacteria and active site studies on the extracellular poly(3-hydroxyoctanoic acid) depolymerase of Pseudomonas fluorescens GK13 - Schirmer_1995_Can.J.Microbiol_41 Suppl 1_170 |
| Author(s) : Schirmer A , Matz C , Jendrossek D |
| Ref : Can J Microbiol , 41 Suppl 1 :170 , 1995 |
| Abstract : |
| PubMedSearch : Schirmer_1995_Can.J.Microbiol_41 Suppl 1_170 |
| PubMedID: 7606661 |
| Gene_locus related to this paper: psefl-phaz |