Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: 9pelo-b6vbj1

Caenorhabditis brenneri Putative uncharacterized protein

Relationship
Family|Carb_B_Nematoda
Block| C
Position in NCBI Life Tree|Caenorhabditis brenneri
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Protostomia: N E > Ecdysozoa: N E > Nematoda: N E > Chromadorea: N E > Rhabditida: N E > Rhabditoidea: N E > Rhabditidae: N E > Peloderinae: N E > Caenorhabditis: N E > Caenorhabditis brenneri: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : FJ362363
1 UniProt : B6VBJ1
1 UniProt : B6VBJ1
1 Interpro : B6VBJ1
1 Pfam : B6VBJ1
1 PIRSF : B6VBJ1
1 SUPERFAM : B6VBJ1
Sequence
Graphical view for this peptide sequence: 9pelo-b6vbj1
Colored MSA for Carb_B_Nematoda (raw)
MGGHLSHLKPEPHSNSFLASCGPVLGNVYRHGDKSVDGFLGIPYAKPPLG
DLRFRKPVLAEVWHEPKDCTQYGPRCPSSGMFYEKIDLKNQDLPDEGNCL
TLNVFRPRWQSKEYIKRPVMVFIHGGGFELCASRDYCDYSLTGTLPLKDV
VVVTINYRLGSLGFFSTGDEICRGNFGLWDQTLALVWVQKHISSFGGDPN
NVTIFGQSAGGVSVDLLSLSPHSRELFHKFIPMSGSAHVPFAIRSSENQA
AVSLEYAKNKGFTGSESNELYEFMRNLSMEKLLERTSFEHSASGMVSFGP
NVDGDFFPKPLDELRKEAPKKPVLIGMTEHEGLLFAFSDPYFTTADDVLK
KKISMEYKEDVVENPEKYQKEVFDYYMNYIQDSNEKKLVAYTGDSIFNAG
VLLAAESLKNHGNKVFFYVFDYCNPDGFGPIGNILPFKGSDEMLSPISQL
KISVPTHCSELRYILGEGVYSKFEPNYQDLEMMDYMTTTFTNFAKYGYLR
IHNYQLLTQLFRNPNTAGLMNWEKYELNNDSRHFHITFPESQMRQEFHEG
RCQFLKETNKKNKGYLEIFFGKNN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MGGHLSHLKPEPHSNSFLASCGPVLGNVYRHGDKSVDGFLGIPYAKPPLG
DLRFRKPVLAEVWHEPKDCTQYGPRCPSSGMFYEKIDLKNQDLPDEGNCL
TLNVFRPRWQSKEYIKRPVMVFIHGGGFELCASRDYCDYSLTGTLPLKDV
VVVTINYRLGSLGFFSTGDEICRGNFGLWDQTLALVWVQKHISSFGGDPN
NVTIFGQSAGGVSVDLLSLSPHSRELFHKFIPMSGSAHVPFAIRSSENQA
AVSLEYAKNKGFTGSESNELYEFMRNLSMEKLLERTSFEHSASGMVSFGP
NVDGDFFPKPLDELRKEAPKKPVLIGMTEHEGLLFAFSDPYFTTADDVLK
KKISMEYKEDVVENPEKYQKEVFDYYMNYIQDSNEKKLVAYTGDSIFNAG
VLLAAESLKNHGNKVFFYVFDYCNPDGFGPIGNILPFKGSDEMLSPISQL
KISVPTHCSELRYILGEGVYSKFEPNYQDLEMMDYMTTTFTNFAKYGYLR
IHNYQLLTQLFRNPNTAGLMNWEKYELNNDSRHFHITFPESQMRQEFHEG
RCQFLKETNKKNKGYLEIFFGKNN


Reference
    Title: Multigenome DNA sequence conservation identifies Hox cis-regulatory elements
    Kuntz SG, Schwarz EM, DeModena JA, De Buysscher T, Trout D, Shizuya H, Sternberg PW, Wold BJ
    Ref: Genome Res, 18:1955, 2008 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer