Title : Comparative genomics of the marine bacterial genus Glaciecola reveals the high degree of genomic diversity and genomic characteristic for cold adaptation - Qin_2014_Environ.Microbiol_16_1642 |
Author(s) : Qin QL , Xie BB , Yu Y , Shu YL , Rong JC , Zhang YJ , Zhao DL , Chen XL , Zhang XY , Chen B , Zhou BC , Zhang YZ |
Ref : Environ Microbiol , 16 :1642 , 2014 |
Abstract :
To what extent the genomes of different species belonging to one genus can be diverse and the relationship between genomic differentiation and environmental factor remain unclear for oceanic bacteria. With many new bacterial genera and species being isolated from marine environments, this question warrants attention. In this study, we sequenced all the type strains of the published species of Glaciecola, a recently defined cold-adapted genus with species from diverse marine locations, to study the genomic diversity and cold-adaptation strategy in this genus.The genome size diverged widely from 3.08 to 5.96 Mb, which can be explained by massive gene gain and loss events. Horizontal gene transfer and new gene emergence contributed substantially to the genome size expansion. The genus Glaciecola had an open pan-genome. Comparative genomic research indicated that species of the genus Glaciecola had high diversity in genome size, gene content and genetic relatedness. This may be prevalent in marine bacterial genera considering the dynamic and complex environments of the ocean. Species of Glaciecola had some common genomic features related to cold adaptation, which enable them to thrive and play a role in biogeochemical cycle in the cold marine environments. |
PubMedSearch : Qin_2014_Environ.Microbiol_16_1642 |
PubMedID: 25009843 |
Gene_locus related to this paper: 9alte-k7a5n7 , 9alte-k7a8i8 , glas4-f4ajt2 , 9alte-k6zaf4 , 9alte-k7a7k0 , 9alte-k6z8e2 , 9alte-k6y704 , 9alte-k6yd35 , 9alte-h5t8f8 , 9alte-k6y2r8 |
Gene_locus | 9alte-k7a5n7 9alte-k7a8i8 glas4-f4ajt2 9alte-k6zaf4 9alte-k7a7k0 9alte-k6z8e2 9alte-k6y704 9alte-k6yd35 9alte-h5t8f8 9alte-k6y2r8 |
Gene_locus_frgt | 9alte-k6zpv5 |
Qin QL, Xie BB, Yu Y, Shu YL, Rong JC, Zhang YJ, Zhao DL, Chen XL, Zhang XY, Chen B, Zhou BC, Zhang YZ (2014)
Comparative genomics of the marine bacterial genus Glaciecola reveals the high degree of genomic diversity and genomic characteristic for cold adaptation
Environ Microbiol
16 :1642
Qin QL, Xie BB, Yu Y, Shu YL, Rong JC, Zhang YJ, Zhao DL, Chen XL, Zhang XY, Chen B, Zhou BC, Zhang YZ (2014)
Environ Microbiol
16 :1642