Sesham_2021_Bioinformation_17_132

Reference

Title : Molecular modeling, docking and dynamics analysis of lipid droplet associated enzyme Ypr147cp from Saccharomyces cerevisiae - Sesham_2021_Bioinformation_17_132
Author(s) : Sesham K , Manda NK
Ref : Bioinformation , 17 :132 , 2021
Abstract :

Ypr147cp of Saccharomyces cerevisiae was localized to lipid droplets. The recombinant Ypr147cp showed both triacylglycerol lipase and ester hydrolase activities. Knock out of YPR147C led to accumulation of TAG in ypr147cdelta when compared to wild type (WT). Transmission electron microscopic analysis of ypr147cdelta cells show increased lipid bodies. Moreover, the lipid profiling confirmed the accumulation of fatty acids derived from neutral and phospholipids in ypr147cdelta cells. Sequence analysis of Ypr147cp show the presence of an a/b hydrolase domain with the conserved GXSXG lipase motif. The YPR147c homology model was built and the modeled protein was analysed using RMSD and root mean square fluctuation (RMSF) for a 100 ns simulation trajectory. Docking the acetate, butyrate and palmitate ligands with the model confirmed covalent binding of ligands with the Ser207 of the GXSXG motif. Thus, Ypr147cp is a lipid droplet associated triacylglycerol lipase having short chain ester hydrolyzing capacity.

PubMedSearch : Sesham_2021_Bioinformation_17_132
PubMedID: 34393428
Gene_locus related to this paper: aspnc-a2qgm6 , yeast-YPR147C

Related information

Gene_locus aspnc-a2qgm6    yeast-YPR147C

Citations formats

Sesham K, Manda NK (2021)
Molecular modeling, docking and dynamics analysis of lipid droplet associated enzyme Ypr147cp from Saccharomyces cerevisiae
Bioinformation 17 :132

Sesham K, Manda NK (2021)
Bioinformation 17 :132