Zimin_2008_Bioinformatics_24_42

Reference

Title : Assembly reconciliation - Zimin_2008_Bioinformatics_24_42
Author(s) : Zimin AV , Smith DR , Sutton G , Yorke JA
Ref : Bioinformatics , 24 :42 , 2008
Abstract : MOTIVATION: Many genomes are sequenced by a collaboration of several centers, and then each center produces an assembly using their own assembly software. The collaborators then pick the draft assembly that they judge to be the best and the information contained in the other assemblies is usually not used. METHODS: We have developed a technique that we call assembly reconciliation that can merge draft genome assemblies. It takes one draft assembly, detects apparent errors, and, when possible, patches the problem areas using pieces from alternative draft assemblies. It also closes gaps in places where one of the alternative assemblies has spanned the gap correctly. RESULTS: Using the Assembly Reconciliation technique, we produced reconciled assemblies of six Drosophila species in collaboration with Agencourt Bioscience and The J. Craig Venter Institute. These assemblies are now the official (CAF1) assemblies used for analysis. We also produced a reconciled assembly of Rhesus Macaque genome, and this assembly is available from our website http://www.genome.umd.edu. AVAILABILITY: The reconciliation software is available for download from http://www.genome.umd.edu/software.htm
ESTHER : Zimin_2008_Bioinformatics_24_42
PubMedSearch : Zimin_2008_Bioinformatics_24_42
PubMedID: 18057021
Gene_locus related to this paper: droan-ACHE , droan-b3lxv7 , droan-b3ly87 , droan-b3lyh4 , droan-b3lyh5 , droan-b3lyh7 , droan-b3lyh9 , droan-b3lyi0 , droan-b3lyi2 , droan-b3lyi3 , droan-b3lyi4 , droan-b3lyx4 , droan-b3lyx5 , droan-b3lyx6 , droan-b3lyx7 , droan-b3lyx9 , droan-b3lz72 , droan-b3m4e3 , droan-b3m5w1 , droan-b3m6i7 , droan-b3m7v2 , droan-b3m9p3 , droan-b3m524 , droan-b3m635 , droan-b3mdh7 , droan-b3mdw8 , droan-b3mee1 , droan-b3mf47 , droan-b3mf48 , droan-b3mg94 , droan-b3mgn6 , droan-b3mii3 , droan-b3mkr0 , droan-b3ml20 , droan-b3mly4 , droan-b3mly5 , droan-b3mly6 , droan-b3mnb5 , droan-b3muw4 , droan-b3muw8 , droan-b3n2j7 , droan-c5idb2 , droer-ACHE , droer-b3n5y4 , droer-b3n7d2 , droer-b3n7d3 , droer-b3n7d4 , droer-b3n7k8 , droer-b3n8e4 , droer-b3n8f7 , droer-b3n8f8 , droer-b3n9e1 , droer-b3n612 , droer-b3nar5 , droer-b3nb91 , droer-b3nct9 , droer-b3ndh9 , droer-b3ndq8 , droer-b3ne97 , droer-b3nfq9 , droer-b3nmh4 , droer-b3nmy2 , droer-b3npx2 , droer-b3npx3 , droer-b3nq76 , droer-b3nr28 , droer-b3nst4 , droer-b3nyp5.1 , droer-b3nyp5.2 , droer-b3nyp6 , droer-b3nyp7 , droer-b3nyp8 , droer-b3nyp9 , droer-b3nyq3 , droer-b3nz06 , droer-b3nz14 , droer-b3nzj0 , droer-b3p2x6 , droer-b3p2x7 , droer-b3p2x9 , droer-b3p2y1 , droer-b3p2y2 , droer-b3p7b4 , droer-EST6 , droer-q670j5 , drogr-ACHE , drogr-b4iww3 , drogr-b4iwy3 , drogr-b4ixf7 , drogr-b4ixh4 , drogr-b4j2u8 , drogr-b4j3v3 , drogr-b4j4g7 , drogr-b4j4x9 , drogr-b4j6e6 , drogr-b4j9c9 , drogr-b4j9y4 , drogr-b4j156 , drogr-b4j685 , drogr-b4ja76 , drogr-b4jcf0 , drogr-b4jcf1 , drogr-b4jdh6 , drogr-b4jdz1 , drogr-b4jdz2 , drogr-b4jdz4 , drogr-b4jf76 , drogr-b4jf79 , drogr-b4jf80 , drogr-b4jf81 , drogr-b4jf82 , drogr-b4jf83 , drogr-b4jf84 , drogr-b4jf85 , drogr-b4jf87 , drogr-b4jf91 , drogr-b4jf92 , drogr-b4jg66 , drogr-b4jnh9 , drogr-b4jpc6 , drogr-b4jql2 , drogr-b4jrh5 , drogr-b4jth3 , drogr-b4jti1 , drogr-b4jul5 , dromo-ACHE , dromo-b4k6q8 , dromo-b4k6q9 , dromo-b4k6r1 , dromo-b4k6r3 , dromo-b4k6r4 , dromo-b4k6r5 , dromo-b4k6r6 , dromo-b4k6r7 , dromo-b4k6r8 , dromo-b4k6r9 , dromo-b4k6s0 , dromo-b4k6s1 , dromo-b4k6s2 , dromo-b4k9c7 , dromo-b4k9d3 , dromo-b4ka74 , dromo-b4kaj4 , dromo-b4kdg2 , dromo-b4kdh4 , dromo-b4kdh5 , dromo-b4kdh6 , dromo-A0A0Q9XDF2 , dromo-b4kdh8.1 , dromo-b4kdh8.2 , dromo-b4kg04 , dromo-b4kg05 , dromo-b4kg06 , dromo-b4kg16 , dromo-b4kh20 , dromo-b4kh21 , dromo-b4kik0 , dromo-b4kjx0 , dromo-b4kki1 , dromo-b4klv8 , dromo-b4kp08 , dromo-b4kqa6 , dromo-b4kqa7 , dromo-b4kqa8 , dromo-b4kqh1 , dromo-b4kst4 , dromo-b4ksy6 , dromo-b4ktf5 , dromo-b4ktf6 , dromo-b4kvw2 , dromo-b4kxz6 , dromo-b4ky12 , dromo-b4ky36 , dromo-b4l0n8 , dromo-b4l6l9 , dromo-b4l084 , drovi-ACHE , drovi-b4lev2 , drovi-b4lg54 , drovi-b4lg72 , drovi-b4lgd5 , drovi-b4lgg0 , drovi-b4lgn2 , drovi-b4lk43 , drovi-b4ll59 , drovi-b4ll60 , drovi-b4lln3 , drovi-b4lmk4 , drovi-b4lmp0 , drovi-b4lpd0 , drovi-b4lps0 , drovi-b4lrp6 , drovi-b4lse7 , drovi-b4lse9 , drovi-b4lsf0 , drovi-b4lsn0 , drovi-b4lt32 , drovi-b4lxi9 , drovi-b4lxj8 , drovi-b4lyf3 , drovi-b4m0s0 , drovi-b4m4h7 , drovi-b4m4h8 , drovi-b4m4i0 , drovi-b4m4i2 , drovi-b4m4i3.A , drovi-b4m4i3.B , drovi-b4m4i4 , drovi-b4m4i5 , drovi-b4m4i6 , drovi-b4m4i7 , drovi-b4m4i8 , drovi-b4m4i9 , drovi-b4m4j2 , drovi-b4m5a0 , drovi-b4m5a1 , drovi-b4m5a2 , drovi-b4m7k9 , drovi-b4m9g9 , drovi-b4m9h0 , drovi-b4m599 , drovi-b4m918 , drovi-b4mfa4 , drovi-estes , drowi-ACHE , drowi-b4mjb9 , drowi-b4mqe9 , drowi-b4mqf0.2 , drowi-b4mqf1 , drowi-b4mqf3 , drowi-b4mqf4 , drowi-b4mqf5 , drowi-b4mqq6 , drowi-b4mrk3 , drowi-b4mtl5 , drowi-b4mug2 , drowi-b4mw32 , drowi-b4mw85 , drowi-b4mwz7 , drowi-b4mxn5 , drowi-b4my54 , drowi-b4myh5 , drowi-b4n1a7 , drowi-b4n3s9 , drowi-b4n3x7 , drowi-b4n6n0 , drowi-b4n6n7 , drowi-b4n6u6 , drowi-b4n7s6 , drowi-b4n7s7 , drowi-b4n7s8 , drowi-b4n899.1 , drowi-b4n8a1 , drowi-b4n8a2 , drowi-b4n8a3 , drowi-b4n8a4 , drowi-b4n8a9 , drowi-b4n023 , drowi-b4n075 , drowi-b4n543 , drowi-b4n888 , drowi-b4n889 , drowi-b4n891 , drowi-b4n893 , drowi-b4n895 , drowi-b4n897 , drowi-b4n898 , drowi-b4n899.2 , drowi-b4ng76 , drowi-b4nga7 , drowi-b4ngb5 , drowi-b4njk8 , drowi-b4nky0 , drowi-b4nn59 , drowi-b4nnc1 , drowi-b4nng1 , drowi-b4nng2 , droya-q71d76 , drowi-a0a0q9x0t3 , drovi-b4mcn9

Related information

Gene_locus related to this paper: droan-ACHE , droan-b3lxv7 , droan-b3ly87 , droan-b3lyh4 , droan-b3lyh5 , droan-b3lyh7 , droan-b3lyh9 , droan-b3lyi0 , droan-b3lyi2 , droan-b3lyi3 , droan-b3lyi4 , droan-b3lyx4 , droan-b3lyx5 , droan-b3lyx6 , droan-b3lyx7 , droan-b3lyx9 , droan-b3lz72 , droan-b3m4e3 , droan-b3m5w1 , droan-b3m6i7 , droan-b3m7v2 , droan-b3m9p3 , droan-b3m524 , droan-b3m635 , droan-b3mdh7 , droan-b3mdw8 , droan-b3mee1 , droan-b3mf47 , droan-b3mf48 , droan-b3mg94 , droan-b3mgn6 , droan-b3mii3 , droan-b3mkr0 , droan-b3ml20 , droan-b3mly4 , droan-b3mly5 , droan-b3mly6 , droan-b3mnb5 , droan-b3muw4 , droan-b3muw8 , droan-b3n2j7 , droan-c5idb2 , droer-ACHE , droer-b3n5y4 , droer-b3n7d2 , droer-b3n7d3 , droer-b3n7d4 , droer-b3n7k8 , droer-b3n8e4 , droer-b3n8f7 , droer-b3n8f8 , droer-b3n9e1 , droer-b3n612 , droer-b3nar5 , droer-b3nb91 , droer-b3nct9 , droer-b3ndh9 , droer-b3ndq8 , droer-b3ne97 , droer-b3nfq9 , droer-b3nmh4 , droer-b3nmy2 , droer-b3npx2 , droer-b3npx3 , droer-b3nq76 , droer-b3nr28 , droer-b3nst4 , droer-b3nyp5.1 , droer-b3nyp5.2 , droer-b3nyp6 , droer-b3nyp7 , droer-b3nyp8 , droer-b3nyp9 , droer-b3nyq3 , droer-b3nz06 , droer-b3nz14 , droer-b3nzj0 , droer-b3p2x6 , droer-b3p2x7 , droer-b3p2x9 , droer-b3p2y1 , droer-b3p2y2 , droer-b3p7b4 , droer-EST6 , droer-q670j5 , drogr-ACHE , drogr-b4iww3 , drogr-b4iwy3 , drogr-b4ixf7 , drogr-b4ixh4 , drogr-b4j2u8 , drogr-b4j3v3 , drogr-b4j4g7 , drogr-b4j4x9 , drogr-b4j6e6 , drogr-b4j9c9 , drogr-b4j9y4 , drogr-b4j156 , drogr-b4j685 , drogr-b4ja76 , drogr-b4jcf0 , drogr-b4jcf1 , drogr-b4jdh6 , drogr-b4jdz1 , drogr-b4jdz2 , drogr-b4jdz4 , drogr-b4jf76 , drogr-b4jf79 , drogr-b4jf80 , drogr-b4jf81 , drogr-b4jf82 , drogr-b4jf83 , drogr-b4jf84 , drogr-b4jf85 , drogr-b4jf87 , drogr-b4jf91 , drogr-b4jf92 , drogr-b4jg66 , drogr-b4jnh9 , drogr-b4jpc6 , drogr-b4jql2 , drogr-b4jrh5 , drogr-b4jth3 , drogr-b4jti1 , drogr-b4jul5 , dromo-ACHE , dromo-b4k6q8 , dromo-b4k6q9 , dromo-b4k6r1 , dromo-b4k6r3 , dromo-b4k6r4 , dromo-b4k6r5 , dromo-b4k6r6 , dromo-b4k6r7 , dromo-b4k6r8 , dromo-b4k6r9 , dromo-b4k6s0 , dromo-b4k6s1 , dromo-b4k6s2 , dromo-b4k9c7 , dromo-b4k9d3 , dromo-b4ka74 , dromo-b4kaj4 , dromo-b4kdg2 , dromo-b4kdh4 , dromo-b4kdh5 , dromo-b4kdh6 , dromo-A0A0Q9XDF2 , dromo-b4kdh8.1 , dromo-b4kdh8.2 , dromo-b4kg04 , dromo-b4kg05 , dromo-b4kg06 , dromo-b4kg16 , dromo-b4kh20 , dromo-b4kh21 , dromo-b4kik0 , dromo-b4kjx0 , dromo-b4kki1 , dromo-b4klv8 , dromo-b4kp08 , dromo-b4kqa6 , dromo-b4kqa7 , dromo-b4kqa8 , dromo-b4kqh1 , dromo-b4kst4 , dromo-b4ksy6 , dromo-b4ktf5 , dromo-b4ktf6 , dromo-b4kvw2 , dromo-b4kxz6 , dromo-b4ky12 , dromo-b4ky36 , dromo-b4l0n8 , dromo-b4l6l9 , dromo-b4l084 , drovi-ACHE , drovi-b4lev2 , drovi-b4lg54 , drovi-b4lg72 , drovi-b4lgd5 , drovi-b4lgg0 , drovi-b4lgn2 , drovi-b4lk43 , drovi-b4ll59 , drovi-b4ll60 , drovi-b4lln3 , drovi-b4lmk4 , drovi-b4lmp0 , drovi-b4lpd0 , drovi-b4lps0 , drovi-b4lrp6 , drovi-b4lse7 , drovi-b4lse9 , drovi-b4lsf0 , drovi-b4lsn0 , drovi-b4lt32 , drovi-b4lxi9 , drovi-b4lxj8 , drovi-b4lyf3 , drovi-b4m0s0 , drovi-b4m4h7 , drovi-b4m4h8 , drovi-b4m4i0 , drovi-b4m4i2 , drovi-b4m4i3.A , drovi-b4m4i3.B , drovi-b4m4i4 , drovi-b4m4i5 , drovi-b4m4i6 , drovi-b4m4i7 , drovi-b4m4i8 , drovi-b4m4i9 , drovi-b4m4j2 , drovi-b4m5a0 , drovi-b4m5a1 , drovi-b4m5a2 , drovi-b4m7k9 , drovi-b4m9g9 , drovi-b4m9h0 , drovi-b4m599 , drovi-b4m918 , drovi-b4mfa4 , drovi-estes , drowi-ACHE , drowi-b4mjb9 , drowi-b4mqe9 , drowi-b4mqf0.2 , drowi-b4mqf1 , drowi-b4mqf3 , drowi-b4mqf4 , drowi-b4mqf5 , drowi-b4mqq6 , drowi-b4mrk3 , drowi-b4mtl5 , drowi-b4mug2 , drowi-b4mw32 , drowi-b4mw85 , drowi-b4mwz7 , drowi-b4mxn5 , drowi-b4my54 , drowi-b4myh5 , drowi-b4n1a7 , drowi-b4n3s9 , drowi-b4n3x7 , drowi-b4n6n0 , drowi-b4n6n7 , drowi-b4n6u6 , drowi-b4n7s6 , drowi-b4n7s7 , drowi-b4n7s8 , drowi-b4n899.1 , drowi-b4n8a1 , drowi-b4n8a2 , drowi-b4n8a3 , drowi-b4n8a4 , drowi-b4n8a9 , drowi-b4n023 , drowi-b4n075 , drowi-b4n543 , drowi-b4n888 , drowi-b4n889 , drowi-b4n891 , drowi-b4n893 , drowi-b4n895 , drowi-b4n897 , drowi-b4n898 , drowi-b4n899.2 , drowi-b4ng76 , drowi-b4nga7 , drowi-b4ngb5 , drowi-b4njk8 , drowi-b4nky0 , drowi-b4nn59 , drowi-b4nnc1 , drowi-b4nng1 , drowi-b4nng2 , droya-q71d76 , drowi-a0a0q9x0t3 , drovi-b4mcn9

Citations formats

Zimin AV, Smith DR, Sutton G, Yorke JA (2008)
Assembly reconciliation
Bioinformatics 24 :42

Zimin AV, Smith DR, Sutton G, Yorke JA (2008)
Bioinformatics 24 :42