| Title : Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate - Pavlova_2009_Nat.Chem.Biol_5_727 |
| Author(s) : Pavlova M , Klvana M , Prokop Z , Chaloupkova R , Banas P , Otyepka M , Wade RC , Tsuda M , Nagata Y , Damborsky J |
| Ref : Nat Chemical Biology , 5 :727 , 2009 |
| Abstract : |
| PubMedSearch : Pavlova_2009_Nat.Chem.Biol_5_727 |
| PubMedID: 19701186 |
| Title : Second step of hydrolytic dehalogenation in haloalkane dehalogenase investigated by QM\/MM methods - Otyepka_2008_Proteins_70_707 |
| Author(s) : Otyepka M , Banas P , Magistrato A , Carloni P , Damborsky J |
| Ref : Proteins , 70 :707 , 2008 |
| Abstract : |
| PubMedSearch : Otyepka_2008_Proteins_70_707 |
| PubMedID: 17729274 |
| Title : MOLE: a Voronoi diagram-based explorer of molecular channels, pores, and tunnels - Petrek_2007_Structure_15_1357 |
| Author(s) : Petrek M , Kosinova P , Koca J , Otyepka M |
| Ref : Structure , 15 :1357 , 2007 |
| Abstract : |
| PubMedSearch : Petrek_2007_Structure_15_1357 |
| PubMedID: 17997961 |
| Title : CAVER: a new tool to explore routes from protein clefts, pockets and cavities - Petrek_2006_BMC.Bioinformatics_7_316 |
| Author(s) : Petrek M , Otyepka M , Banas P , Kosinova P , Koca J , Damborsky J |
| Ref : BMC Bioinformatics , 7 :316 , 2006 |
| Abstract : |
| PubMedSearch : Petrek_2006_BMC.Bioinformatics_7_316 |
| PubMedID: 16792811 |
| Title : Mechanism of enhanced conversion of 1,2,3-trichloropropane by mutant haloalkane dehalogenase revealed by molecular modeling - Banas_2006_J.Comput.Aided.Mol.Des_20_375 |
| Author(s) : Banas P , Otyepka M , Jerabek P , Petrek M , Damborsky J |
| Ref : J Comput Aided Mol Des , 20 :375 , 2006 |
| Abstract : |
| PubMedSearch : Banas_2006_J.Comput.Aided.Mol.Des_20_375 |
| PubMedID: 17016745 |
| Title : Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues - Oakley_2004_Biochemistry_43_870 |
| Author(s) : Oakley AJ , Klvana M , Otyepka M , Nagata Y , Wilce MC , Damborsky J |
| Ref : Biochemistry , 43 :870 , 2004 |
| Abstract : |
| PubMedSearch : Oakley_2004_Biochemistry_43_870 |
| PubMedID: 14744129 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Functionally relevant motions of haloalkane dehalogenases occur in the specificity-modulating cap domains - Otyepka_2002_Protein.Sci_11_1206 |
| Author(s) : Otyepka M , Damborsky J |
| Ref : Protein Science , 11 :1206 , 2002 |
| Abstract : |
| PubMedSearch : Otyepka_2002_Protein.Sci_11_1206 |
| PubMedID: 11967377 |