| Title : A single mutation in a tunnel to the active site changes the mechanism and kinetics of product release in haloalkane dehalogenase LinB - Biedermannova_2012_J.Biol.Chem_287_29062 |
| Author(s) : Biedermannova L , Prokop Z , Gora A , Chovancova E , Kovacs M , Damborsky J , Wade RC |
| Ref : Journal of Biological Chemistry , 287 :29062 , 2012 |
| Abstract : |
| PubMedSearch : Biedermannova_2012_J.Biol.Chem_287_29062 |
| PubMedID: 22745119 |
| Title : Pathways and mechanisms for product release in the engineered haloalkane dehalogenases explored using classical and random acceleration molecular dynamics simulations - Klvana_2009_J.Mol.Biol_392_1339 |
| Author(s) : Klvana M , Pavlova M , Koudelakova T , Chaloupkova R , Dvorak P , Prokop Z , Stsiapanava A , Kuty M , Kuta-Smatanova I , Dohnalek J , Kulhanek P , Wade RC , Damborsky J |
| Ref : Journal of Molecular Biology , 392 :1339 , 2009 |
| Abstract : |
| PubMedSearch : Klvana_2009_J.Mol.Biol_392_1339 |
| PubMedID: 19577578 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate - Pavlova_2009_Nat.Chem.Biol_5_727 |
| Author(s) : Pavlova M , Klvana M , Prokop Z , Chaloupkova R , Banas P , Otyepka M , Wade RC , Tsuda M , Nagata Y , Damborsky J |
| Ref : Nat Chemical Biology , 5 :727 , 2009 |
| Abstract : |
| PubMedSearch : Pavlova_2009_Nat.Chem.Biol_5_727 |
| PubMedID: 19701186 |
| Title : Quantitative analysis of substrate specificity of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 - Kmunicek_2005_Biochemistry_44_3390 |
| Author(s) : Kmunicek J , Hynkova K , Jedlicka T , Nagata Y , Negri A , Gago F , Wade RC , Damborsky J |
| Ref : Biochemistry , 44 :3390 , 2005 |
| Abstract : |
| PubMedSearch : Kmunicek_2005_Biochemistry_44_3390 |
| PubMedID: 15736949 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Comparative binding energy analysis of haloalkane dehalogenase substrates: modelling of enzyme-substrate complexes by molecular docking and quantum mechanical calculations - Kmunicek_2003_J.Comput.Aided.Mol.Des_17_299 |
| Author(s) : Kmunicek J , Bohac M , Luengo S , Gago F , Wade RC , Damborsky J |
| Ref : J Comput Aided Mol Des , 17 :299 , 2003 |
| Abstract : |
| PubMedSearch : Kmunicek_2003_J.Comput.Aided.Mol.Des_17_299 |
| PubMedID: 14635723 |
| Title : Comparative binding energy analysis of the substrate specificity of haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 - Kmunicek_2001_Biochemistry_40_8905 |
| Author(s) : Kmunicek J , Luengo S , Gago F , Ortiz AR , Wade RC , Damborsky J |
| Ref : Biochemistry , 40 :8905 , 2001 |
| Abstract : |
| PubMedSearch : Kmunicek_2001_Biochemistry_40_8905 |
| PubMedID: 11467952 |
| Gene_locus related to this paper: xanau-halo1 |
| Title : Protein-protein association: investigation of factors influencing association rates by brownian dynamics simulations - Gabdoulline_2001_J.Mol.Biol_306_1139 |
| Author(s) : Gabdoulline RR , Wade RC |
| Ref : Journal of Molecular Biology , 306 :1139 , 2001 |
| Abstract : |
| PubMedSearch : Gabdoulline_2001_J.Mol.Biol_306_1139 |
| PubMedID: 11237623 |
| Title : Computer Simulation of Protein-Protein Association Kinetics: Acetylcholinesterase-Fasciculin - Elcock_1999_J.Mol.Biol_291_149 |
| Author(s) : Elcock AH , Gabdoulline RR , Wade RC , McCammon JA |
| Ref : Journal of Molecular Biology , 291 :149 , 1999 |
| Abstract : |
| PubMedSearch : Elcock_1999_J.Mol.Biol_291_149 |
| PubMedID: 10438612 |
| Title : Theoretical investigation of the dynamics of the active site lid in Rhizomucor miehei lipase - Peters_1996_Biophys.J_71_119 |
| Author(s) : Peters GH , Olsen OH , Svendsen A , Wade RC |
| Ref : Biophysical Journal , 71 :119 , 1996 |
| Abstract : |
| PubMedSearch : Peters_1996_Biophys.J_71_119 |
| PubMedID: 8804595 |