Thornton JM

References (16)

Title : AlphaFold heralds a data-driven revolution in biology and medicine -
Author(s) : Thornton JM , Laskowski RA , Borkakoti N
Ref : Nat Med , 27 :1666 , 2021
PubMedID: 34642488

Title : The Enzyme Portal: an integrative tool for enzyme information and analysis - Zaru_2021_FEBS.J__
Author(s) : Zaru R , Onwubiko J , Ribeiro AJM , Cochrane K , Tyzack JD , Muthukrishnan V , Pravda L , Thornton JM , O'Donovan C , Velanker S , Orchard S , Leach A , Martin MJ
Ref : Febs J , : , 2021
Abstract :
PubMedSearch : Zaru_2021_FEBS.J__
PubMedID: 34437766

Title : A global analysis of function and conservation of catalytic residues in enzymes - Ribeiro_2020_J.Biol.Chem_295_314
Author(s) : Ribeiro AJM , Tyzack JD , Borkakoti N , Holliday GL , Thornton JM
Ref : Journal of Biological Chemistry , 295 :314 , 2020
Abstract :
PubMedSearch : Ribeiro_2020_J.Biol.Chem_295_314
PubMedID: 31796628

Title : Integrating structure, bioinformatics, and enzymology to discover function: BioH, a new carboxylesterase from Escherichia coli - Sanishvili_2003_J.Biol.Chem_278_26039
Author(s) : Sanishvili R , Yakunin AF , Laskowski RA , Skarina T , Evdokimova E , Doherty-Kirby A , Lajoie GA , Thornton JM , Arrowsmith CH , Savchenko A , Joachimiak A , Edwards AM
Ref : Journal of Biological Chemistry , 278 :26039 , 2003
Abstract :
PubMedSearch : Sanishvili_2003_J.Biol.Chem_278_26039
PubMedID: 12732651
Gene_locus related to this paper: ecoli-bioh

Title : The CATH protein family database: a resource for structural and functional annotation of genomes - Orengo_2002_Proteomics_2_11
Author(s) : Orengo CA , Bray JE , Buchan DW , Harrison A , Lee D , Pearl FM , Sillitoe I , Todd AE , Thornton JM
Ref : Proteomics , 2 :11 , 2002
Abstract :
PubMedSearch : Orengo_2002_Proteomics_2_11
PubMedID: 11788987

Title : Plasticity of enzyme active sites - Todd_2002_Trends.Biochem.Sci_27_419
Author(s) : Todd AE , Orengo CA , Thornton JM
Ref : Trends in Biochemical Sciences , 27 :419 , 2002
Abstract :
PubMedSearch : Todd_2002_Trends.Biochem.Sci_27_419
PubMedID: 12151227

Title : Sequence and structural differences between enzyme and nonenzyme homologs - Todd_2002_Structure_10_1435
Author(s) : Todd AE , Orengo CA , Thornton JM
Ref : Structure , 10 :1435 , 2002
Abstract :
PubMedSearch : Todd_2002_Structure_10_1435
PubMedID: 12377129

Title : A rapid classification protocol for the CATH Domain Database to support structural genomics - Pearl_2001_Nucleic.Acids.Res_29_223
Author(s) : Pearl FM , Martin N , Bray JE , Buchan DW , Harrison AP , Lee D , Reeves GA , Shepherd AJ , Sillitoe I , Todd AE , Thornton JM , Orengo CA
Ref : Nucleic Acids Research , 29 :223 , 2001
Abstract :
PubMedSearch : Pearl_2001_Nucleic.Acids.Res_29_223
PubMedID: 11125098

Title : Evolution of function in protein superfamilies, from a structural perspective - Todd_2001_J.Mol.Biol_307_1113
Author(s) : Todd AE , Orengo CA , Thornton JM
Ref : Journal of Molecular Biology , 307 :1113 , 2001
Abstract :
PubMedSearch : Todd_2001_J.Mol.Biol_307_1113
PubMedID: 11286560

Title : Using the CATH domain database to assign structures and functions to the genome sequences - Pearl_2000_Biochem.Soc.Trans_28_269
Author(s) : Pearl F , Todd AE , Bray JE , Martin AC , Salamov AA , Suwa M , Swindells MB , Thornton JM , Orengo CA
Ref : Biochemical Society Transactions , 28 :269 , 2000
Abstract :
PubMedSearch : Pearl_2000_Biochem.Soc.Trans_28_269
PubMedID: 10816141

Title : The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues - Bray_2000_Protein.Eng_13_153
Author(s) : Bray JE , Todd AE , Pearl FM , Thornton JM , Orengo CA
Ref : Protein Engineering , 13 :153 , 2000
Abstract :
PubMedSearch : Bray_2000_Protein.Eng_13_153
PubMedID: 10775657

Title : From structure to function: approaches and limitations - Thornton_2000_Nat.Struct.Biol_7 Suppl_991
Author(s) : Thornton JM , Todd AE , Milburn D , Borkakoti N , Orengo CA
Ref : Nat Struct Biol , 7 Suppl :991 , 2000
Abstract :
PubMedSearch : Thornton_2000_Nat.Struct.Biol_7 Suppl_991
PubMedID: 11104008

Title : The CATH Database provides insights into protein structure\/function relationships - Orengo_1999_Nucleic.Acids.Res_27_275
Author(s) : Orengo CA , Pearl FM , Bray JE , Todd AE , Martin AC , Lo Conte L , Thornton JM
Ref : Nucleic Acids Research , 27 :275 , 1999
Abstract :
PubMedSearch : Orengo_1999_Nucleic.Acids.Res_27_275
PubMedID: 9847200

Title : From protein structure to function - Orengo_1999_Curr.Opin.Struct.Biol_9_374
Author(s) : Orengo CA , Todd AE , Thornton JM
Ref : Current Opinion in Structural Biology , 9 :374 , 1999
Abstract :
PubMedSearch : Orengo_1999_Curr.Opin.Struct.Biol_9_374
PubMedID: 10361094

Title : Protein folds, functions and evolution - Thornton_1999_J.Mol.Biol_293_333
Author(s) : Thornton JM , Orengo CA , Todd AE , Pearl FM
Ref : Journal of Molecular Biology , 293 :333 , 1999
Abstract :
PubMedSearch : Thornton_1999_J.Mol.Biol_293_333
PubMedID: 10529349

Title : Evolution of protein function, from a structural perspective - Todd_1999_Curr.Opin.Chem.Biol_3_548
Author(s) : Todd AE , Orengo CA , Thornton JM
Ref : Curr Opin Chemical Biology , 3 :548 , 1999
Abstract :
PubMedSearch : Todd_1999_Curr.Opin.Chem.Biol_3_548
PubMedID: 10508675