(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) > cellular organisms: NE > Eukaryota: NE > Viridiplantae: NE > Streptophyta: NE > Streptophytina: NE > Embryophyta: NE > Tracheophyta: NE > Euphyllophyta: NE > Spermatophyta: NE > Magnoliophyta: NE > Mesangiospermae: NE > Liliopsida: NE > Petrosaviidae: NE > commelinids: NE > Poales: NE > Poaceae: NE > BOP clade: NE > Oryzoideae: NE > Oryzeae: NE > Oryzinae: NE > Oryza: NE > Oryza glumipatula: NE
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Oryza barthii: N, E.
Oryza meridionalis: N, E.
Oryza nivara: N, E.
Oryza rufipogon: N, E.
LegendThis sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA MPKTATPMLLQPISGAGAGARRSSAEGLSPPPTARLRRRVLCAIRADAPP PIHLSAAAPSRPAKPPVCTADELHHAPVSGAGWRLALWRYRPPPHAPARN HPLMLLSGVGTNAIGFDLSPGASFARHMSNQGFDTWIVEVRGSGLSIRDH DNSASSPSGAFDDISNGTLALDKSSTLEVASVQSSGFSGIDYDDLGIVAL DDPPLLMEMTSFFDRISKLLEEASLNKNFHEITDKISVLSEMVESSAVIG PMREESLRLLKNFQEQIDSWEHFVATQMNLNSEYNWDFDHYLEEDIPTAV EYIRQHSRVKDGKLLAIGHSMGGILLYAMLSKYGFEGVPSNLAAIVTLAS SVDYTTSNSSLKMLLPLVHPAQALNVPAVPLGTLLAAAYPWASGPPYLFS WLNHQISAQDMMHPELLSKLVQCLQRLSFNLQQLFGKGGYAIELKLSHTK IICDITPVLALAGDKDLICPPEAVYETVKLIPQHMVKYGVFGKPEGPHYA HYDLVGGRLATDEVYPCIIEFLSHHDQ
Cultivated rice (Oryza sativa) is an AA genome Oryza species that was most likely domesticated from wild populations of O. rufipogon in Asia. O. rufipogon and O. meridionalis are the only AA genome species found within Australia and occur as widespread populations across northern Australia. The chloroplast genome sequence of O. rufipogon from Asia and Australia and O. meridionalis and O. australiensis (an Australian member of the genus very distant from O. sativa) was obtained by massively parallel sequencing and compared with the chloroplast genome sequence of domesticated O. sativa. Oryza australiensis differed in more than 850 sites single nucleotide polymorphism or indel from each of the other samples. The other wild rice species had only around 100 differences relative to cultivated rice. The chloroplast genomes of Australian O. rufipogon and O. meridionalis were closely related with only 32 differences. The Asian O. rufipogon chloroplast genome (with only 68 differences) was closer to O. sativa than the Australian taxa (both with more than 100 differences). The chloroplast sequences emphasize the genetic distinctness of the Australian populations and their potential as a source of novel rice germplasm. The Australian O. rufipogon may be a perennial form of O. meridionalis.
