Gene_Locus Report

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Gene_locus Report for: dauca-a0a166ecg9

Daucus carota subsp. sativus. Uncharacterized protein

Comment
Only c-term Pfam BD-FAE 186 335


Relationship
Family|BD-FAE
Block| H
Position in NCBI Life Tree|Daucus carota subsp. sativus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > campanulids: N E > Apiales: N E > Apiineae: N E > Apiaceae: N E > Apioideae: N E > Scandiceae: N E > Daucinae: N E > Daucus: N E > Daucus sect. Daucus: N E > Daucus carota: N E > Daucus carota subsp. sativus: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : LNRQ01000002
1 UniProt : A0A166ECG9
1 UniProt : A0A166ECG9
1 Interpro : A0A166ECG9
1 Prodom : A0A166ECG9
1 Pfam : A0A166ECG9
1 PIRSF : A0A166ECG9
1 SUPERFAM : A0A166ECG9
Sequence
Graphical view for this peptide sequence: dauca-a0a166ecg9
Colored MSA for BD-FAE (raw)
RRGSGDNSPESDRRSDGQGLSNEVAEVAVDTYRITRLGFTLLRYLGVGYR
WVLKFLALGCYAFLLFPGFVQVGYYYFFSRQIRRGVVYGDEPRNRLDLYL
PKDTNGPKPVVAFVTGGAWIIGTFDSIVKLLFEKHQDKGKIYKAWGSLLG
QQLSERDVIVACIDYRNFPQGTMSDMVKDASQGISFVCNNIAEYGGDPNR
IFLMGQSAGAHIAACALLDQAIKESSGERTTWSVSQIRSYFGLSGGIMEG
ELSLRRFSPEVMLQDSNITSAASLLPPIVLFHGTADYSIPCDASTTFADT
LQRAGVKAESILYEGKTHTDLFLQDPMRGGADEMFDDLVRRIHAGDAEAL
AKHAAAPPRRRLVPEFMLKLARRVSPF
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

RRGSGDNSPESDRRSDGQGLSNEVAEVAVDTYRITRLGFTLLRYLGVGYR
WVLKFLALGCYAFLLFPGFVQVGYYYFFSRQIRRGVVYGDEPRNRLDLYL
PKDTNGPKPVVAFVTGGAWIIGTFDSIVKLLFEKHQDKGKIYKAWGSLLG
QQLSERDVIVACIDYRNFPQGTMSDMVKDASQGISFVCNNIAEYGGDPNR
IFLMGQSAGAHIAACALLDQAIKESSGERTTWSVSQIRSYFGLSGGIMEG
ELSLRRFSPEVMLQDSNITSAASLLPPIVLFHGTADYSIPCDASTTFADT
LQRAGVKAESILYEGKTHTDLFLQDPMRGGADEMFDDLVRRIHAGDAEAL
AKHAAAPPRRRLVPEFMLKLARRVSPF


Reference
    Title: A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution
    Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W and Simon P <11 more author(s)>
    Ref: Nat Genet, 48:657, 2016 : PubMed

            


Other Papers


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Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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