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Gene_locus Report for: denpd-u4uj02

Dendroctonus ponderosae (Mountain pine beetle) Uncharacterized protein

Relationship
Family|Carb_B_Arthropoda
Block| C
Position in NCBI Life Tree|Dendroctonus ponderosae
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Protostomia: N E > Ecdysozoa: N E > Panarthropoda: N E > Arthropoda: N E > Mandibulata: N E > Pancrustacea: N E > Hexapoda: N E > Insecta: N E > Dicondylia: N E > Pterygota: N E > Neoptera: N E > Holometabola: N E > Coleoptera: N E > Polyphaga: N E > Cucujiformia: N E > Curculionoidea: N E > Curculionidae: N E > Scolytinae: N E > Dendroctonus: N E > Dendroctonus ponderosae: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : KB632194, KB741266
2 UniProt : U4UJ02, N6TT59
2 UniProt : U4UJ02, N6TT59
2 Interpro : U4UJ02, N6TT59
2 Pfam : U4UJ02, N6TT59
2 PIRSF : U4UJ02, N6TT59
2 SUPERFAM : U4UJ02, N6TT59
Sequence
Graphical view for this peptide sequence: denpd-u4uj02
Colored MSA for Carb_B_Arthropoda (raw)
MADVLVEVEQGKLQGTTGHDYYGGKFFKFLGVPYAKAPIGDLRFKAPQPP
EPWTGVKNATKEGAECPSADMFFSFYVGQEDNCLNLNVYTKELPKEDKPV
KKAVMVWIHGGAFTCGSNRSFMYGPEYLMTQDIVLVAINYRLGILGFASF
KDPSLGIPGNAGLKDMREALRWVQKNVGKFGGDPDNVTIFGESAGGASVH
YLTLAPSTQGLFHKAIVQSGSALNNWSWGKNNAPEIAKCLGYKETEENKI
VEKLRKESAKAIVQSQRKLKEVFASGKIRPWGPVVEPESPDAILTEHPSK
IMQSQGGHKIPLIIGYNSGEGIFFELVRRTVPGVGIPKHLEHEIPYELGL
VKGSERSKQMAERLKKAYFGDKECHEDIDQMYKLKGDTCFIHPIQRTLKL
QAKHSHQPVYAYRMSLVSSLNYFHTFAMTKHFKTTMFCSLLSMASVKFLP
SAKESVLNMLNKVPKREMNGVVHADDLLYLFPTFFTPPIQRGSTEDRYIQ
RFVKMWTNFAIHGEPTPHHDEALDHVKWKPVSHENVEFLDIGHKLNMIEN
VDGDRMDIWDDIYKNHLTV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MADVLVEVEQGKLQGTTGHDYYGGKFFKFLGVPYAKAPIGDLRFKAPQPP
EPWTGVKNATKEGAECPSADMFFSFYVGQEDNCLNLNVYTKELPKEDKPV
KKAVMVWIHGGAFTCGSNRSFMYGPEYLMTQDIVLVAINYRLGILGFASF
KDPSLGIPGNAGLKDMREALRWVQKNVGKFGGDPDNVTIFGESAGGASVH
YLTLAPSTQGLFHKAIVQSGSALNNWSWGKNNAPEIAKCLGYKETEENKI
VEKLRKESAKAIVQSQRKLKEVFASGKIRPWGPVVEPESPDAILTEHPSK
IMQSQGGHKIPLIIGYNSGEGIFFELVRRTVPGVGIPKHLEHEIPYELGL
VKGSERSKQMAERLKKAYFGDKECHEDIDQMYKLKGDTCFIHPIQRTLKL
QAKHSHQPVYAYRMSLVSSLNYFHTFAMTKHFKTTMFCSLLSMASVKFLP
SAKESVLNMLNKVPKREMNGVVHADDLLYLFPTFFTPPIQRGSTEDRYIQ
RFVKMWTNFAIHGEPTPHHDEALDHVKWKPVSHENVEFLDIGHKLNMIEN
VDGDRMDIWDDIYKNHLTV


Reference
    Title: Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest
    Keeling CI, Yuen MM, Liao NY, Roderick Docking T, Chan SK, Taylor GA, Palmquist DL, Jackman SD, Nguyen A and Bohlmann J <10 more author(s)>
    Ref: Genome Biol, 14:R27, 2013 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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