Gene_locus Report for: maize-a0a1d6kqc9 Zea mays (Maize). Uncharacterized conserved protein UCP031088 alpha/beta hydrolase
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > PACMAD clade: N E > Panicoideae: N E > Andropogonodae: N E > Andropogoneae: N E > Tripsacinae: N E > Zea: N E > Zea mays: N E 6_AlphaBeta_hydrolase :
maize-b6u1c6 Zea mays (Maize) seed-specific esterase regulator of tocopherol content ZmVTE7 ,
maize-b4fg35 Zea mays (Maize) Putative uncharacterized protein .
A85-EsteraseD-FGH :
maize-b6t2y5 Zea mays (Maize) Putative uncharacterized protein .
ABHD13-BEM46 :
maize-b4fd83 Zea mays (Maize). Alpha/beta-Hydrolases superfamily protein .
ABHD18 :
maize-b8a0v1 Zea mays (Maize) Putative uncharacterized protein .
abh_upf0017 :
maize-b6u4k5 Zea mays (Maize) Embryogenesis-associated protein EMB8 .
Acidic_Lipase :
maize-b6t9i6 Zea mays (Maize) Lipase .
BD-FAE :
maize-b4ffc7 Zea mays (Maize) Putative uncharacterized protein ,
maize-b6uah8 Zea mays (Maize) Carboxylesterase-like protein .
Bodyguard :
maize-a0a317y1z8 Zea mays (Maize) Putative lysophospholipase BODYGUARD 3 ,
maize-a0a3l6dbz7 Zea mays (Maize) Putative lysophospholipase BODYGUARD 3 ,
maize-a0a3l6efm3 Zea mays (Maize) Putative lysophospholipase BODYGUARD 3 .
Carboxypeptidase_S10 :
maize-b4fc42 Zea mays (Maize) Uncharacterized protein ,
maize-c0hfi7 Zea mays (Maize) Uncharacterized protein ,
maize-c0hhb1 Zea mays (Maize) Uncharacterized protein ,
maize-c0hhp4 Zea mays (Maize) Uncharacterized protein ,
maize-b4fg76 Zea mays (Maize) Serine carboxypeptidase-like 19 IA-myo-inositol synthase .
CGI-58_ABHD5_ABHD4 :
maize-b4faq7 Zea mays (Maize) Putative uncharacterized protein .
Chlorophyllase_Plant :
maize-b6u4j0 Zea mays (Maize) Chlorophyllase-2 ,
maize-c0pcy5 Zea mays (Maize) Putative uncharacterized protein ,
maize-a0a096swr3 Zea mays (Maize). Uncharacterized protein .
CMBL :
maize-b4fv80 Zea mays (Maize). Carboxymethylenebutenolidase .
Dienelactone_hydrolase :
maize-e134 Zea mays (Maize) endo-1,3;1,4-beta-d-glucanase precursor (EC 3.2.1.-.) .
DPP4N_Peptidase_S9 :
maize-c0hhs0 Zea mays (Maize) Putative uncharacterized protein .
Duf_726 :
maize-b4f9g7 Zea mays (Maize) Putative uncharacterized protein ,
maize-b4fgc3 Zea mays (Maize) Putative uncharacterized protein .
Duf_1350 :
maize-b6t978 Zea mays (Maize); Arundo donax (Giant reed) Putative uncharacterized protein ,
maize-c0hia5 Zea mays (Maize) Putative uncharacterized protein .
Epoxide_hydrolase :
maize-b4ff27 Zea mays (Maize) Putative uncharacterized protein ,
maize-b4fp91 Zea mays (Maize) Epoxide hydrolase 2 ,
maize-b4fwq7 Zea mays (Maize) Putative uncharacterized protein ,
maize-b6suw2 Zea mays (Maize) Putative uncharacterized protein ,
maize-b6t857 Zea mays (Maize) Epoxide hydrolase 2 ,
maize-b6u9l8 Zea mays (Maize) Epoxide hydrolase 2 ,
maize-b6uii7 Zea mays (Maize) Epoxide hydrolase 2 ,
maize-c0pi43 Zea mays (Maize) Putative uncharacterized protein .
Fusarinine_C_esterase_sidJ :
maize-c0pa79 Zea mays (Maize) Uncharacterized protein .
Hydroxynitrile_lyase :
maize-b6sjm2 Zea mays (Maize) Esterase PIR7B ,
maize-b6tpp0 Zea mays (Maize) Polyneuridine-aldehyde esterase ,
maize-b6u2i9 Zea mays (Maize) Esterase PIR7B ,
maize-b6u5b4 Zea mays (Maize) Esterase PIR7A ,
maize-b6u8r6 Zea mays (Maize) Esterase PIR7A ,
maize-b6u048 Zea mays (Maize) Esterase PIR7B ,
maize-c0p9m6 Zea mays (Maize) Putative uncharacterized protein ,
maize-c0pnm1 Zea mays (Maize) Putative uncharacterized protein Esterase PIR7B ,
maize-c0pnx9 Zea mays (Maize) Putative uncharacterized protein .
LIDHydrolase :
maize-b4fuv1 Zea mays (Maize) Putative uncharacterized protein .
LYsophospholipase_carboxylesterase :
maize-b6t1C9 .
Maspardin-ACP33-SPG21_like :
maize-b6trt5 Zea mays (Maize) Putative uncharacterized protein .
Monoglyceridelipase_lysophospholip :
maize-b4f7w5 Zea mays (Maize) Putative uncharacterized protein ,
maize-b4ffl7 Zea mays (Maize) Putative uncharacterized protein ,
maize-c0hdv1 Zea mays (Maize) Putative uncharacterized protein .
Ndr_family :
maize-b4feg9 Zea mays (Maize) Uncharacterized protein ,
maize-c0pfl3 Zea mays (Maize) Uncharacterized protein ,
maize-b4fpr7 Zea mays (Maize) Uncharacterized protein .
NLS3-Tex30 :
maize-b6u7e1 Zea mays (Maize) Esterase/lipase/thioesterase family protein .
Pectinacetylesterase-Notum :
maize-b4f9x6 Zea mays (Maize) Putative uncharacterized protein ,
maize-b4fvg6 Zea mays (Maize) Putative uncharacterized protein ,
maize-b6trm6 Zea mays (Maize) Carboxylic ester hydrolase ,
maize-b6u7q4 Zea mays (Maize) Carboxylic ester hydrolase ,
maize-b6u063 Zea mays (Maize) Carboxylic ester hydrolase ,
maize-b8a2j2 Zea mays (Maize) Putative uncharacterized protein ,
maize-c0pgf7 Zea mays (Maize) Putative uncharacterized protein ,
maize-c0pgw1 Zea mays (Maize) Putative uncharacterized protein ,
maize-k7vy73 Zea mays (Maize). Uncharacterized protein .
Pheophytinase :
maize-b4fz64 Zea mays (Maize) Putative uncharacterized protein ,
maize-b6ti01 Zea mays (Maize) Hydrolase, alpha/beta fold family protein .
Plant_carboxylesterase :
maize-k7v3i9 Zea mays (Maize). Putative carboxylesterase 17 ,
maize-b6u9v9 Zea mays (Maize). Putative carboxylesterase 17. Hsr203J ,
maize-a0a3l6e780 Zea mays (Maize). Putative carboxylesterase 17 .
Plant_lipase_EDS1-like :
maize-b4fpy6 Zea mays (Maize). Protein EDS1 .
PMH_Peptidase_S9 :
maize-b6uhc0 Zea mays (Maize) Putative uncharacterized protein .
PPase_methylesterase_euk :
maize-b6til5 Zea mays (Maize) Protein phosphatase methylesterase 1 .
Proline_iminopeptidase :
maize-b4f869 Zea mays (Maize). Proline iminopeptidase ,
maize-b4fqc9 Zea mays (Maize). Proline iminopeptidase .
Prolylcarboxypeptidase :
maize-b4f9i1 Zea mays (Maize) Lysosomal Pro-X carboxypeptidase ,
maize-b6thh6 Zea mays (Maize) Prolyl carboxypeptidase like protein ,
maize-b8a0f2 Zea mays (Maize) Uncharacterized protein .
RsbQ-like :
maize-b6trw7 Zea mays (Maize) D14 Sigma factor sigB regulation protein rsbQ ,
maize-b6tze5 Zea mays (Maize) D14L Sigma factor sigB regulation protein rsbQ ,
maize-c0pef2 Zea mays (Maize) Putative uncharacterized protein .
S9N_PREPL_Peptidase_S9 :
maize-b6sw49 Zea mays (Maize) Protease 2 ,
maize-b6u2a2 Zea mays (Maize) Protease 2 .
Triacylglycerol-lipase-OBL1-like :
maize-a0a1d6nse2 Zea mays (Maize). Triacylglycerol lipase-like 1 ,
maize-a0a3l6d913 Zea mays (Maize). Lipase .
UCP031088 :
maize-b6svg4 Zea mays (Maize). Uncharacterized conserved protein UCP031088 alpha/beta hydrolase Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: maize-a0a1d6kqc9 Colored MSA for UCP031088 (raw)
MLLQPIPTATLAARPRSSEASFPFRCHRRRRVLLPVRADLTPISLSASAP
SRPAKPAVCTADELHYASVDGAGWRLALWRYRPPRNAPVRNHPLMLLSGV
GTNAVGFDLSPGASFARHMSSQGFDTWIVEVRGAGLSMREYDDSTPSGSV
TFEDVSSGIQPLNSTFEATSIQSSGGYASDCDDLGIVALDEPPLLAELSN
FFDRISKLMEEAVVNGNFHEITEKVSVLSEMVESSTIIGPVREESLRLLK
NFQDQLDSWERFVATQMDLTSEYNWDFDHYLEEDIPAALEYIKQHSRAKD
GKLLAIGHSMGGILLYAMLSRSELLCITISYLFFPTLQGFEGVSSNLAAI
VTLASSVDYTTSNSSLKLLLPLAHPAQALNVPAVPLGTLLAAAYPWASGP
PYLFSWLNPQISAQDMMHPELLAKLVSNNFCTVPAKVVLQLTTAFREGGL
CNRNGTFSYKDHLRECQTPVLALAGDKDLICPPDAVYETVKLIPNHKVDY
RVFGKPQGPHYAHYDLVGGRLAINEVYPCIIEFLSRHDGY
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M L L Q P I P T A T L A A R P R S S E A S F P F R C H R R R R V L L P V R A D L T P I S L S A S A P S R P A K P A V C T A D E L H Y A S V D G A G W R L A L W R Y R P P R N A P V R N H P L M L L S G V G T N A V G F D L S P G A S F A R H M S S Q G F D T W I V E V R G A G L S M R E Y D D S T P S G S V T F E D V S S G I Q P L N S T F E A T S I Q S S G G Y A S D C D D L G I V A L D E P P L L A E L S N F F D R I S K L M E E A V V N G N F H E I T E K V S V L S E M V E S S T I I G P V R E E S L R L L K N F Q D Q L D S W E R F V A T Q M D L T S E Y N W D F D H Y L E E D I P A A L E Y I K Q H S R A K D G K L L A I G H S M G G I L L Y A M L S R S E L L C I T I S Y L F F P T L Q G F E G V S S N L A A I V T L A S S V D Y T T S N S S L K L L L P L A H P A Q A L N V P A V P L G T L L A A A Y P W A S G P P Y L F S W L N P Q I S A Q D M M H P E L L A K L V S N N F C T V P A K V V L Q L T T A F R E G G L C N R N G T F S Y K D H L R E C Q T P V L A L A G D K D L I C P P D A V Y E T V K L I P N H K V D Y R V F G K P Q G P H Y A H Y D L V G G R L A I N E V Y P C I I E F L S R H D G Y
Reference
Title: Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomesSun S , Zhou Y , Chen J , Shi J , Zhao H , Song W , Zhang M , Cui Y , Dong X and Lai J <16 more author(s)> Sun S , Zhou Y , Chen J , Shi J , Zhao H , Song W , Zhang M , Cui Y , Dong X , Liu H , Ma X , Jiao Y , Wang B , Wei X , Stein JC , Glaubitz JC , Lu F , Yu G , Liang C , Fengler K , Li B , Rafalski A , Schnable PS , Ware DH , Buckler ES , Lai J (- 16) Ref: Nat Genet, 50 :1289, 2018 : PubMed Abstract ESTHER: Sun_2018_Nat.Genet_50_1289 PubMedSearch: Sun 2018 Nat.Genet 50 1289 PubMedID: 30061735 Gene_locus related to this paper: maize-a0a1d6kqc9 ,
maize-k7v3i9 ,
maize-b6u9v9 ,
maize-a0a3l6e780 ,
maize-b4fv80 ,
maize-a0a3l6d913 Abstract
Maize is an important crop with a high level of genome diversity and heterosis. The genome sequence of a typical female line, B73, was previously released. Here, we report a de novo genome assembly of a corresponding male representative line, Mo17. More than 96.4% of the 2,183 Mb assembled genome can be accounted for by 362 scaffolds in ten pseudochromosomes with 38,620 annotated protein-coding genes. Comparative analysis revealed large gene-order and gene structural variations: approximately 10% of the annotated genes were mutually nonsyntenic, and more than 20% of the predicted genes had either large-effect mutations or large structural variations, which might cause considerable protein divergence between the two inbred lines. Our study provides a high-quality reference-genome sequence of an important maize germplasm, and the intraspecific gene order and gene structural variations identified should have implications for heterosis and genome evolution.
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