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Gene_locus Report for: rapsa-a0a6j0jyp3

Raphanus sativus (Radish) (Raphanus raphanistrum var. sativus). protein EDS1B-like

Relationship
Family|Plant_lipase_EDS1-like
Block| L
Position in NCBI Life Tree|Raphanus sativus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Brassiceae: N E > Raphanus: N E > Raphanus sativus: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : XP_018440623
1 UniProt : A0A6J0JYP3
1 UniProt : A0A6J0JYP3
1 Interpro : A0A6J0JYP3
1 Prodom : A0A6J0JYP3
1 Pfam : A0A6J0JYP3
1 PIRSF : A0A6J0JYP3
1 SUPERFAM : A0A6J0JYP3
Sequence
Graphical view for this peptide sequence: rapsa-a0a6j0jyp3
Colored MSA for Plant_lipase_EDS1-like (raw)
MALVAFSGINNDLITRSWMASARAYNTDHFHKEEEREVVFVAFRPSFLEK
DCFAPENKSPFGETKMNRAQFPCMRSIGNDVDATVNESFLKNFQLLTSPT
TSFCDYVKTVVERRQSQRIVFTGHSTGGATAILATVWYLETYFKKQRSSG
FPFPEPLCVTFGAPLVGDYVFNHALGRENWSRFFVNFVTRFDLVPRIMLA
RKASTKQALPHVLSRLDPRSVAIQENDQIIPGFYTTVMKETATVAHHAVC
ELIGYGDAFLETFSSFLDLSPYRPAGTFVFYTGTGLFSVSNSDAILQILF
YASQSSNQHELSLVPYQSVKDHRSYEEMVHTMAAKPLNHLDLHHLPLDGD
PTLLDLGLSTRARQCVRAAFEAEKQRVDNQTKIYNKLPKIVEKLTWIEDE
YKPRCKTHKNGYYDSFKYSNEEKDFRANVNRAELAGLFDEVLGLVKKGLL
PDGFEGHREWIELSTRYRRLIEPLDISNYHRHLKNEDTGPYMLKGRPNRY
KHAQRGYEHELLKAGKSAEEIKESRCGSCFWADVEELKGKAYESVEVKRF
EKLVEGWIRDGEIDDEQIFLEGSTFRKWWHSLPEEHKRSSLLRERMGGET
IST
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MALVAFSGINNDLITRSWMASARAYNTDHFHKEEEREVVFVAFRPSFLEK
DCFAPENKSPFGETKMNRAQFPCMRSIGNDVDATVNESFLKNFQLLTSPT
TSFCDYVKTVVERRQSQRIVFTGHSTGGATAILATVWYLETYFKKQRSSG
FPFPEPLCVTFGAPLVGDYVFNHALGRENWSRFFVNFVTRFDLVPRIMLA
RKASTKQALPHVLSRLDPRSVAIQENDQIIPGFYTTVMKETATVAHHAVC
ELIGYGDAFLETFSSFLDLSPYRPAGTFVFYTGTGLFSVSNSDAILQILF
YASQSSNQHELSLVPYQSVKDHRSYEEMVHTMAAKPLNHLDLHHLPLDGD
PTLLDLGLSTRARQCVRAAFEAEKQRVDNQTKIYNKLPKIVEKLTWIEDE
YKPRCKTHKNGYYDSFKYSNEEKDFRANVNRAELAGLFDEVLGLVKKGLL
PDGFEGHREWIELSTRYRRLIEPLDISNYHRHLKNEDTGPYMLKGRPNRY
KHAQRGYEHELLKAGKSAEEIKESRCGSCFWADVEELKGKAYESVEVKRF
EKLVEGWIRDGEIDDEQIFLEGSTFRKWWHSLPEEHKRSSLLRERMGGET
IST


Reference
    Title: A complete mitochondrial genome sequence of Ogura-type male-sterile cytoplasm and its comparative analysis with that of normal cytoplasm in radish (Raphanus sativus L.)
    Tanaka Y, Tsuda M, Yasumoto K, Yamagishi H, Terachi T
    Ref: BMC Genomics, 13:352, 2012 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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