Gene_Locus Report

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Gene_locus Report for: solch-a0a0v0i330

Solanum chacoense (Chaco potato), Solanum lycopersicum (Tomato), Solanum tuberosum (Potato), Putative uncharacterized protein

Comment
Other strains: Solanum chacoense (Chaco potato), Solanum lycopersicum (Tomato) (Lycopersicon esculentum), Solanum tuberosum (Potato)


Relationship
Family|Duf_1350
Block| X
Position in NCBI Life Tree|Solanum chacoense
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > lamiids: N E > Solanales: N E > Solanaceae: N E > Solanoideae: N E > Solaneae: N E > Solanum: N E > Solanum chacoense: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 UniProt : A0A0V0I330, M1BCS5
2 Interpro : A0A0V0I330, M1BCS5
2 Pfam : A0A0V0I330, M1BCS5
2 PIRSF : A0A0V0I330, M1BCS5
2 SUPERFAM : A0A0V0I330, M1BCS5
Sequence
Graphical view for this peptide sequence: solch-a0a0v0i330
Colored MSA for Duf_1350 (raw)
MNCVTAPKANWRCSPAISFYSDSTKYYNRSSIRFYPGNRKFSRIRCNLKD
TGSSSSSNNQPETSTGIQLYRDIERLLTETVKQSQDWGSSQDWDEIEGAW
VLQPKTSKPKLVVHFVGGVFVGAAPQLSYRLFLERLRQKDVLVIATPYAS
GFDHFYIADEVQFKFDRCLRFLQERVQDLPVFGIGHSLGSVIHLLIGARY
AVKRNGNVLMAFNNKDASLAVPLFSSVLVPMMQNFGPVLSQIASSPTIRL
GAEMTMKQIENLSPSIMKQVFPLVEQLTPLYTDLINGKENFTPRPEETQR
LIRSYYGISRNLLVKFKDDTIDETSTLAQVLSSGSAISSMLDMSIRTLPG
DHALPLQQALPNVPPGMTDAVNRSSELLANLTAGTPWENVTKEVGNTLGN
VDSIILNSGNSKDLDMLVETITSWMYSNTGPRLLQ
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MNCVTAPKANWRCSPAISFYSDSTKYYNRSSIRFYPGNRKFSRIRCNLKD
TGSSSSSNNQPETSTGIQLYRDIERLLTETVKQSQDWGSSQDWDEIEGAW
VLQPKTSKPKLVVHFVGGVFVGAAPQLSYRLFLERLRQKDVLVIATPYAS
GFDHFYIADEVQFKFDRCLRFLQERVQDLPVFGIGHSLGSVIHLLIGARY
AVKRNGNVLMAFNNKDASLAVPLFSSVLVPMMQNFGPVLSQIASSPTIRL
GAEMTMKQIENLSPSIMKQVFPLVEQLTPLYTDLINGKENFTPRPEETQR
LIRSYYGISRNLLVKFKDDTIDETSTLAQVLSSGSAISSMLDMSIRTLPG
DHALPLQQALPNVPPGMTDAVNRSSELLANLTAGTPWENVTKEVGNTLGN
VDSIILNSGNSKDLDMLVETITSWMYSNTGPRLLQ



No Reference

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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