Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: spima-b5vxr5

Arthrospira maxima; Arthrospira platensis; Arthrospira sp. Putative uncharacterized protein

Comment
Other strains Arthrospira maxima CS-328; Arthrospira platensis ( NIES-39 / IAM M-135; C1) (Spirulina platensis); Arthrospira sp. PCC 8005


Relationship
Family|Duf_1350
Block| X
Position in NCBI Life Tree|Arthrospira maxima CS-328
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Cyanobacteria/Melainabacteria group: N E > Cyanobacteria: N E > Oscillatoriophycideae: N E > Oscillatoriales: N E > Microcoleaceae: N E > Arthrospira: N E > Arthrospira maxima: N E > Arthrospira maxima CS-328: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : ABYK01000007
1 UniProt : B5VXR5
>3 UniProt links 1 more: B5VXR5, D4ZRE1, H1WCP4
>3 Interpro links 1 more: B5VXR5, D4ZRE1, H1WCP4
>3 Pfam links 1 more: B5VXR5, D4ZRE1, H1WCP4
>3 PIRSF links 1 more: B5VXR5, D4ZRE1, H1WCP4
>3 SUPERFAM links 1 more: B5VXR5, D4ZRE1, H1WCP4
Sequence
Graphical view for this peptide sequence: spima-b5vxr5
Colored MSA for Duf_1350 (raw)
MDWLEFSDNWVLIPPKPKAIVHFLGGAFVASAPHITYRWLLEQLGLQGYA
IIATPFINTLDHGNMAREVLWTFEDGLEDLFAAQKLRRRGLPIYGIGHSM
GCKLHLLIGSLFEVERAGNILISFNNYTARQSIPLVEQLSSVIDVEFTPT
PQQTNSLVGDRYQVRRNLLIQFSKDNIDQSSGLYQILNHRFPGLVTLQQL
RGDHQTPLAQDISWPRGESFSPLDAIGQWFKHEVYKDLYQLRREVLQWLN
PLSPVKNI
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MDWLEFSDNWVLIPPKPKAIVHFLGGAFVASAPHITYRWLLEQLGLQGYA
IIATPFINTLDHGNMAREVLWTFEDGLEDLFAAQKLRRRGLPIYGIGHSM
GCKLHLLIGSLFEVERAGNILISFNNYTARQSIPLVEQLSSVIDVEFTPT
PQQTNSLVGDRYQVRRNLLIQFSKDNIDQSSGLYQILNHRFPGLVTLQQL
RGDHQTPLAQDISWPRGESFSPLDAIGQWFKHEVYKDLYQLRREVLQWLN
PLSPVKNI



No Reference

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer